Works matching IS 13674803 AND DT 2008 AND VI 24 AND IP 21

Results: 31

Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2474, doi. 10.1093/bioinformatics/btn458

By:

Xi Chen;
Lily Wang;
Jonathan D. Smith;
Bing Zhang

Publication type:

Article

PREDICT-2ND: a tool for generalized protein local structure prediction.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2453, doi. 10.1093/bioinformatics/btn438

By:

Sol Katzman;
Christian Barrett;
Grant Thiltgen;
Rachel Karchin;
Kevin Karplus

Publication type:

Article

ADZE: a rarefaction approach for counting alleles private to combinations of populations.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2498, doi. 10.1093/bioinformatics/btn478

By:

Zachary A. Szpiech;
Mattias Jakobsson;
Noah A. Rosenberg

Publication type:

Article

An unsupervised conditional random fields approach for clustering gene expression time series.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2467, doi. 10.1093/bioinformatics/btn375

By:

Chang-Tsun Li;
Yinyin Yuan;
Roland Wilson

Publication type:

Article

Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2482, doi. 10.1093/bioinformatics/btn476

By:

Elissa J. Cosgrove;
Yingchun Zhou;
Timothy S. Gardner;
Eric D. Kolaczyk

Publication type:

Article

System estimation from metabolic time-series data.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2505, doi. 10.1093/bioinformatics/btn470

By:

Gautam Goel;
I-Chun Chou;
Eberhard O. Voit

Publication type:

Article

In Response to Comment on Network-constrained regularization and variable selection for analysis of genomic data.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2569, doi. 10.1093/bioinformatics/btn485

By:

Caiyan Li;
Hongzhe Li

Publication type:

Article

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2564, doi. 10.1093/bioinformatics/btn477

By:

C. Nelson Hayes;
Diego Diez;
Nicolas Joannin;
Wataru Honda;
Minoru Kanehisa;
Mats Wahlgren;
Craig E. Wheelock;
Susumu Goto

Publication type:

Article

OmicsViz: Cytoscape plug-in for visualizing omics data across species.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2557, doi. 10.1093/bioinformatics/btn473

By:

Tian Xia;
Julie A. Dickerson

Publication type:

Article

DESHARKY: automatic design of metabolic pathways for optimal cell growth.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2554, doi. 10.1093/bioinformatics/btn471

By:

Guillermo Rodrigo;
Javier Carrera;
Kristala Jones Prather;
Alfonso Jaramillo

Publication type:

Article

FACTA: a text search engine for finding associated biomedical concepts.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2559, doi. 10.1093/bioinformatics/btn469

By:

Yoshimasa Tsuruoka;
Junichi Tsujii;
Sophia Ananiadou

Publication type:

Article

SynBioSS: the synthetic biology modeling suite.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2551, doi. 10.1093/bioinformatics/btn468

By:

Anthony D. Hill;
Jonathan R. Tomshine;
Emma M. B. Weeding;
Vassilios Sotiropoulos;
Yiannis N. Kaznessis

Publication type:

Article

Analyzing gene perturbation screens with nested effects models in R and bioconductor.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2549

By:

Holger FrÃ¶hlich;
Tim BeiÃbarth;
Achim Tresch;
Dennis Kostka;
Juby Jacob;
Rainer Spang;
F. Markowetz

Publication type:

Article

GOfetcher: a database with complex searching facility for gene ontology.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2561, doi. 10.1093/bioinformatics/btn441

By:

Mehdi Pirooznia;
Tanwir Habib;
Edward J. Perkins;
Youping Deng

Publication type:

Article

Integrating expression data with domain interaction networks.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2546, doi. 10.1093/bioinformatics/btn437

By:

Dorothea Emig;
Melissa S. Cline;
Thomas Lengauer;
Mario Albrecht

Publication type:

Article

Comment on network-constrained regularization and variable selection for analysis of genomic data.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2566, doi. 10.1093/bioinformatics/btn412

By:

Harald Binder;
Martin Schumacher

Publication type:

Article

Improving subcellular localization prediction using text classification and the gene ontology.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2512, doi. 10.1093/bioinformatics/btn463

By:

Alona Fyshe;
Yifeng Liu;
Duane Szafron;
Russ Greiner;
Paul Lu

Publication type:

Article

F-Seq: a feature density estimator for high-throughput sequence tags.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2537, doi. 10.1093/bioinformatics/btn480

By:

Alan P. Boyle;
Justin Guinney;
Gregory E. Crawford;
Terrence S. Furey

Publication type:

Article

PathCase: pathways database system.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2526, doi. 10.1093/bioinformatics/btn459

By:

Brendan Elliott;
Mustafa Kirac;
Ali Cakmak;
Gokhan Yavas;
Stephen Mayes;
En Cheng;
Yuan Wang;
Chirag Gupta;
Gultekin Ozsoyoglu;
Zehra Meral Ozsoyoglu

Publication type:

Article

Chemical substructures that enrich for biological activity.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2518, doi. 10.1093/bioinformatics/btn479

By:

Justin Klekota;
Frederick P. Roth

Publication type:

Article

BEST: Bayesian estimation of species trees under the coalescent model.

Published in:: Bioinformatics, 2008, v. 24, n. 21, p. 2542, doi. 10.1093/bioinformatics/btn484
Publication type:: Article

STREAM: Static Thermodynamic REgulAtory Model of transcription.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2544, doi. 10.1093/bioinformatics/btn467

By:

Denis C. Bauer;
Timothy L. Bailey

Publication type:

Article

ProteoWizard: open source software for rapid proteomics tools development.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2534, doi. 10.1093/bioinformatics/btn323

By:

Darren Kessner;
Matt Chambers;
Robert Burke;
David Agus;
Parag Mallick

Publication type:

Article

Bosque: integrated phylogenetic analysis software.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2539

By:

Salvador RamÃrez-Flandes;
Osvaldo Ulloa

Publication type:

Article

Identification of the idiosyncratic bacterial protein tyrosine kinase (BY-kinase) family signature.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2427, doi. 10.1093/bioinformatics/btn462

By:

Fanny Jadeau;
Emmanuelle Bechet;
Alain J. Cozzone;
Christophe Grangeasse;
Christophe Combet

Publication type:

Article

Direct mapping and alignment of protein sequences onto genomic sequence.

Published in:: Bioinformatics, 2008, v. 24, n. 21, p. 2438, doi. 10.1093/bioinformatics/btn460
Publication type:: Article

AMIN domains have a predicted role in localization of diverse periplasmic protein complexes.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2423, doi. 10.1093/bioinformatics/btn449

By:

Robson Francisco de Souza;
Vivek Anantharaman;
L. Aravind;
Frederico J. Gueiros-Filho

Publication type:

Article

ZOOM! Zillions of oligos mapped.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2431, doi. 10.1093/bioinformatics/btn416

By:

Hao Lin;
Zefeng Zhang;
Michael Q. Zhang;
Bin Ma;
Ming Li

Publication type:

Article

INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2445, doi. 10.1093/bioinformatics/btn474

By:

Sriram Sankararaman;
Kimmen SjÃ¶lander

Publication type:

Article

Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2491, doi. 10.1093/bioinformatics/btn482

By:

Antonio Reverter;
Eva K. F. Chan

Publication type:

Article

Biomolecular pleiomorphism probed by spatial interpolation of coarse models.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2460, doi. 10.1093/bioinformatics/btn461

By:

Mirabela Rusu;
Stefan Birmanns;
Willy Wriggers

Publication type:

Article