Works matching IS 13674803 AND DT 2008 AND VI 24 AND IP 16

Results: 53

An integrative approach for predicting interactions of protein regions.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i35, doi. 10.1093/bioinformatics/btn290

By:

Sven-Eric Schelhorn;
Thomas Lengauer;
Mario Albrecht

Publication type:

Article

Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i213, doi. 10.1093/bioinformatics/btn289

By:

Julio Saez-Rodriguez;
Stefan Gayer;
Martin Ginkel;
Ernst Dieter Gilles

Publication type:

Article

From minimal signed circuits to the dynamics of Boolean regulatory networks.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i220, doi. 10.1093/bioinformatics/btn287

By:

Elisabeth Remy;
Paul Ruet

Publication type:

Article

Clinically driven semi-supervised class discovery in gene expression data.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i90, doi. 10.1093/bioinformatics/btn279

By:

Israel Steinfeld;
Roy Navon;
Diego Ardigò;
Ivana Zavaroni;
Zohar Yakhini

Publication type:

Article

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i70, doi. 10.1093/bioinformatics/btn278

By:

Pei Gao;
Antti Honkela;
Magnus Rattray;
Neil D. Lawrence

Publication type:

Article

Annotation of metagenome short reads using proxygenes.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276

By:

Daniel Dalevi;
Natalia N. Ivanova;
Konstantinos Mavromatis;
Sean D. Hooper;
Ernest Szeto;
Philip Hugenholtz;
Nikos C. Kyrpides;
Victor M. Markowitz

Publication type:

Article

SIRENE: supervised inference of regulatory networks.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i76, doi. 10.1093/bioinformatics/btn273

By:

Fantine Mordelet;
Jean-Philippe Vert

Publication type:

Article

Protein structure alignment considering phenotypic plasticity.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i98, doi. 10.1093/bioinformatics/btn271

By:

Gergely Csaba;
Fabian Birzele;
Ralf Zimmer

Publication type:

Article

PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i83, doi. 10.1093/bioinformatics/btn269

By:

Hubert Rehrauer;
Susan Schönmann;
Leo Eberl;
Ralph Schlapbach

Publication type:

Article

Fusing time series expression data through hybrid aggregation and hierarchical merge.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i63, doi. 10.1093/bioinformatics/btn264

By:

Elena Tsiporkova;
Veselka Boeva

Publication type:

Article

Sequence analysis of GerM and SpoVS, uncharacterized bacterial sporulation proteins with widespread phylogenetic distribution.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1793, doi. 10.1093/bioinformatics/btn314

By:

Daniel J. Rigden;
Michael Y. Galperin

Publication type:

Article

Predicting functional regulatory polymorphisms.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1787, doi. 10.1093/bioinformatics/btn311

By:

Ali Torkamani;
Nicholas J. Schork

Publication type:

Article

Predicting sub-Golgi localization of type II membrane proteins.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1779, doi. 10.1093/bioinformatics/btn309

By:

A. D. J. van Dijk;
D. Bosch;
C. J. F. ter Braak;
A. R. van der Krol;
R. C. H. J. van Ham

Publication type:

Article

Memory-efficient dynamic programming backtrace and pairwise local sequence alignment.

Published in:: Bioinformatics, 2008, v. 24, n. 16, p. 1772, doi. 10.1093/bioinformatics/btn308
Publication type:: Article

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.

Published in:: Bioinformatics, 2008, v. 24, n. 16, p. 1798, doi. 10.1093/bioinformatics/btn326
Publication type:: Article

Database indexing for production MegaBLAST searches.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1757, doi. 10.1093/bioinformatics/btn322

By:

Aleksandr Morgulis;
George Coulouris;
Yan Raytselis;
Thomas L. Madden;
Richa Agarwala;
Alejandro A. Schäffer

Publication type:

Article

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1745, doi. 10.1093/bioinformatics/btn256

By:

Meng Li;
Hyun-il Henry Paik;
Curt Balch;
Yoosung Kim;
Lang Li;
Tim H-M. Huang;
Kenneth P. Nephew;
Sun Kim

Publication type:

Article

A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1749, doi. 10.1093/bioinformatics/btn321

By:

Hung-I Harry Chen;
Fang-Han Hsu;
Yuan Jiang;
Mong-Hsun Tsai;
Pan-Chyr Yang;
Paul S. Meltzer;
Eric Y. Chuang;
Yidong Chen

Publication type:

Article

Efficient functional clustering of protein sequences using the Dirichlet process.

Published in:: Bioinformatics, 2008, v. 24, n. 16, p. 1765, doi. 10.1093/bioinformatics/btn244
Publication type:: Article

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i119, doi. 10.1093/bioinformatics/btn291

By:

Shi Yu;
Steven Van Vooren;
Leon-Charles Tranchevent;
Bart De Moor;
Yves Moreau

Publication type:

Article

RNA structure alignment by a unit-vector approach.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i112, doi. 10.1093/bioinformatics/btn288

By:

Emidio Capriotti;
Marc A. Marti-Renom

Publication type:

Article

Inter-species normalization of gene mentions with GNAT.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i126, doi. 10.1093/bioinformatics/btn299

By:

Jörg Hakenberg;
Conrad Plake;
Robert Leaman;
Michael Schroeder;
Graciela Gonzalez

Publication type:

Article

Analysis of segmental duplications via duplication distance.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i133, doi. 10.1093/bioinformatics/btn292

By:

Crystal L. Kahn;
Benjamin J. Raphael

Publication type:

Article

Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i105, doi. 10.1093/bioinformatics/btn263

By:

Rafael Najmanovich;
Natalja Kurbatova;
Janet Thornton

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i1

By:

Anna Tramontano;
On behalf of the ECCB08 steering committee

Publication type:

Article

BioMAJ: a flexible framework for databanks synchronization and processing.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1823, doi. 10.1093/bioinformatics/btn325

By:

Olivier Filangi;
Yoann Beausse;
Anthony Assi;
Ludovic Legrand;
Jean-Marc Larré;
Véronique Martin;
Olivier Collin;
Christophe Caron;
Hugues Leroy;
David Allouche

Publication type:

Article

ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1821, doi. 10.1093/bioinformatics/btn317

By:

Brian W. Lambert;
Joseph D. Terwilliger;
Kenneth M. Weiss

Publication type:

Article

MINS2: Revisiting the molecular code for transmembrane-helix recognition by the Sec61 translocon.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1819, doi. 10.1093/bioinformatics/btn255

By:

Yungki Park;
Volkhard Helms

Publication type:

Article

Biomarker selection and sample prediction for multi-category disease on MALDI-TOF data.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. 1812

By:

Jung Hun Oh;
Young Bun Kim;
Prem Gurnani;
Kevin P. Rosenblatt;
Jean X. Gao

Publication type:

Article

A fast and flexible method for the segmentation of aCGH data.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i139, doi. 10.1093/bioinformatics/btn272

By:

Erez Ben-Yaacov;
Yonina C. Eldar

Publication type:

Article

Efficient representation and P-value computation for high-order Markov motifs.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i160

By:

Paulo G. S. da Fonseca;
Katia S. Guimarães;
Marie-France Sagot

Publication type:

Article

Comprehensive in silico mutagenesis highlights functionally important residues in proteins.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i207, doi. 10.1093/bioinformatics/btn268

By:

Yana Bromberg;
Burkhard Rost

Publication type:

Article

Segment-based multiple sequence alignment.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i187, doi. 10.1093/bioinformatics/btn281

By:

Tobias Rausch;
Anne-Katrin Emde;
David Weese;
Andreas Döring;
Cedric Notredame;
Knut Reinert

Publication type:

Article

ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i181, doi. 10.1093/bioinformatics/btn280

By:

Marie-Laure Martin-Magniette;
Tristan Mary-Huard;
Caroline Bérard;
Stéphane Robin

Publication type:

Article

Improved network-based identification of protein orthologs.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i200, doi. 10.1093/bioinformatics/btn277

By:

Nir Yosef;
Roded Sharan;
William Stafford Noble

Publication type:

Article

Connect the dots: exposing hidden protein family connections from the entire sequence tree.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i193, doi. 10.1093/bioinformatics/btn301

By:

Yaniv Loewenstein;
Michal Linial

Publication type:

Article

Optimal spliced alignments of short sequence reads.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i174, doi. 10.1093/bioinformatics/btn300

By:

Fabio De Bona;
Stephan Ossowski;
Korbinian Schneeberger;
Gunnar Rätsch

Publication type:

Article

HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i153, doi. 10.1093/bioinformatics/btn298

By:

Vikas Bansal;
Vineet Bafna

Publication type:

Article

PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i14, doi. 10.1093/bioinformatics/btn297

By:

Chia-Ying Yang;
Chao-Hui Chang;
Ya-Ling Yu;
Tsu-Chun Emma Lin;
Sheng-An Lee;
Chueh-Chuan Yen;
Jinn-Moon Yang;
Jin-Mei Lai;
Yi-Ren Hong;
Tzu-Ling Tseng;
Kun-Mao Chao;
Chi-Ying F. Huang

Publication type:

Article

Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i146

By:

Wei Xu;
Benoît Alain;
David Sankoff

Publication type:

Article

Mining significant tree patterns in carbohydrate sugar chains.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i167, doi. 10.1093/bioinformatics/btn293

By:

Kosuke Hashimoto;
Ichigaku Takigawa;
Motoki Shiga;
Minoru Kanehisa;
Hiroshi Mamitsuka

Publication type:

Article

Temporal logic patterns for querying dynamic models of cellular interaction networks.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i227, doi. 10.1093/bioinformatics/btn275

By:

Pedro T. Monteiro;
Delphine Ropers;
Radu Mateescu;
Ana T. Freitas;
Hidde de Jong

Publication type:

Article

Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i21, doi. 10.1093/bioinformatics/btn274

By:

A.M. Willemsen;
G.A. Jansen;
J.C. Komen;
S. van Hooff;
H.R. Waterham;
P.M.T. Brites;
R.J.A. Wanders;
A.H.C. van Kampen

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2008, v. 24, n. 16, p. i254, doi. 10.1093/bioinformatics/btn399
Publication type:: Article

Towards de novo identification of metabolites by analyzing tandem mass spectra.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i49, doi. 10.1093/bioinformatics/btn270

By:

Sebastian Böcker;
Florian Rasche

Publication type:

Article

ECCB 2008 Organization.

Published in:: Bioinformatics, 2008, v. 24, n. 16, p. i3, doi. 10.1093/bioinformatics/btn369
Publication type:: Article

Gain and loss of phosphorylation sites in human cancer.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i241, doi. 10.1093/bioinformatics/btn267

By:

Predrag Radivojac;
Peter H. Baenziger;
Maricel G. Kann;
Matthew E. Mort;
Matthew W. Hahn;
Sean D. Mooney

Publication type:

Article

Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i234, doi. 10.1093/bioinformatics/btn266

By:

Aitor González;
Claudine Chaouiya;
Denis Thief

Publication type:

Article

Logical analysis of survival data: prognostic survival models by detecting high-degree interactions in right-censored data.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i248

By:

Louis-Philippe Kronek;
Anupama Reddy

Publication type:

Article

An environmental perspective on large-scale genome clustering based on metabolic capabilities.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i56

By:

Gabi Kastenmüller;
Johann Gasteiger;
Hans-Werner Mewes

Publication type:

Article