Works matching IS 13674803 AND DT 2008 AND VI 24 AND IP 13

Results: 73

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i416, doi. 10.1093/bioinformatics/btn184

By:

Bandeira, Nuno;
Olsen, Jesper V.;
Mann, Matthias;
Pevzner, Pavel A.

Publication type:

Article

Identifying gene-disease associations using centrality on a literature mined gene-interaction network.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i277, doi. 10.1093/bioinformatics/btn182

By:

Arzucan Özgür;
Thuy Vu;
Günes Erkan;
Dragomir R. Radev

Publication type:

Article

Detection of IUPAC and IUPAC-like chemical names.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i268, doi. 10.1093/bioinformatics/btn181

By:

Roman Klinger;
Corinna Kolárik;
Juliane Fluck;
Martin Hofmann-Apitius;
Christoph M. Friedrich

Publication type:

Article

The ontology of biological taxa.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i313, doi. 10.1093/bioinformatics/btn158

By:

Stefan Schulz;
Holger Stenzhorn;
Martin Boeker

Publication type:

Article

Towards the use of argumentation in bioinformatics: a gene expression case study.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i304, doi. 10.1093/bioinformatics/btn157

By:

Kenneth McLeod;
Albert Burger

Publication type:

Article

The EXACT description of biomedical protocols.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i295, doi. 10.1093/bioinformatics/btn156

By:

Larisa N. Soldatova;
Wayne Aubrey;
Ross D. King;
Amanda Clare

Publication type:

Article

Annotation-based inference of transporter function.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i259, doi. 10.1093/bioinformatics/btn180

By:

Thomas J. Lee;
Ian Paulsen;
Peter Karp

Publication type:

Article

Predicting protein thermostability changes from sequence upon multiple mutations.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i190, doi. 10.1093/bioinformatics/btn166

By:

Ludovica Montanucci;
Piero Fariselli;
Pier Luigi Martelli;
Rita Casadio

Publication type:

Article

Designing succinct structural alphabets.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i182

By:

Shuai Cheng Li;
Dongbo Bu;
Xin Gao;
Jinbo Xu;
Ming Li

Publication type:

Article

Biomolecular network motif counting and discovery by color coding.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i241, doi. 10.1093/bioinformatics/btn163

By:

Noga Alon;
Phuong Dao;
Iman Hajirasouliha;
Fereydoun Hormozdiari;
S. Cenk Sahinalp

Publication type:

Article

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i232, doi. 10.1093/bioinformatics/btn162

By:

Yoshihiro Yamanishi;
Michihiro Araki;
Alex Gutteridge;
Wataru Honda;
Minoru Kanehisa

Publication type:

Article

Identifying functional modules in protein-protein interaction networks: an integrated exact approach.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i223, doi. 10.1093/bioinformatics/btn161

By:

Marcus T. Dittrich;
Gunnar W. Klau;
Andreas Rosenwald;
Thomas Dandekar;
Tobias Müller

Publication type:

Article

ISMB 2008 Organization.

Published in:: Bioinformatics, 2008, v. 24, n. 13, p. i2, doi. 10.1093/bioinformatics/btn304
Publication type:: Article

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i24, doi. 10.1093/bioinformatics/btn172

By:

Thomas Abeel;
Yvan Saeys;
Pierre Rouzé;
Yves Van de Peer

Publication type:

Article

Algorithm for backrub motions in protein design.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i196, doi. 10.1093/bioinformatics/btn169

By:

Ivelin Georgiev;
Daniel Keedy;
Jane S. Richardson;
David C. Richardson;
Bruce R. Donald

Publication type:

Article

A computational framework to empower probabilistic protein design.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i214, doi. 10.1093/bioinformatics/btn168

By:

Menachem Fromer;
Chen Yanover

Publication type:

Article

Contact replacement for NMR resonance assignment.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i205, doi. 10.1093/bioinformatics/btn167

By:

Fei Xiong;
Gopal Pandurangan;
Chris Bailey-Kellogg

Publication type:

Article

Combinatorial influence of environmental parameters on transcription factor activity.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i172, doi. 10.1093/bioinformatics/btn155

By:

T.A. Knijnenburg;
L.F.A. Wessels;
M.J.T. Reinders

Publication type:

Article

Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i165, doi. 10.1093/bioinformatics/btn154

By:

Lucas D. Ward;
Harmen J. Bussemaker

Publication type:

Article

Classification and feature selection algorithms for multi-class CGH data.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i86, doi. 10.1093/bioinformatics/btn145

By:

Jun Liu;
Sanjay Ranka;
Tamer Kahveci

Publication type:

Article

MACHOS: Markov clusters of homologous subsequences.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i77, doi. 10.1093/bioinformatics/btn144

By:

Simon Wong;
Mark A. Ragan

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2008, v. 24, n. 13, p. i414, doi. 10.1093/bioinformatics/btn303
Publication type:: Article

A max-margin model for efficient simultaneous alignment and folding of RNA sequences.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i68

By:

Chuong B. Do;
Chuan-Sheng Foo;
Serafim Batzoglou

Publication type:

Article

Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i407, doi. 10.1093/bioinformatics/btn143

By:

Yuan Wang;
Xiaobo Zhou;
Honghui Wang;
King Li;
Lixiu Yao;
Stephen T.C. Wong

Publication type:

Article

Differential variability analysis of gene expression and its application to human diseases.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i390

By:

Joshua W.K. Ho;
Maurizio Stefani;
Cristobal G. dos Remedios;
Michael A. Charleston

Publication type:

Article

A robust framework for detecting structural variations in a genome.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i59, doi. 10.1093/bioinformatics/btn176

By:

Seunghak Lee;
Elango Cheran;
Michael Brudno

Publication type:

Article

MicroRNA prediction with a novel ranking algorithm based on random walks.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i50

By:

Yunpen Xu;
Xuefeng Zhou;
Weixiong Zhang

Publication type:

Article

DAnTE: a statistical tool for quantitative analysis of -omics data.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1556, doi. 10.1093/bioinformatics/btn217

By:

Ashoka D. Polpitiya;
Wei-Jun Qian;
Navdeep Jaitly;
Vladislav A. Petyuk;
Joshua N. Adkins;
David G. Camp;
Gordon A. Anderson;
Richard D. Smith

Publication type:

Article

qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1549, doi. 10.1093/bioinformatics/btn227

By:

Christian Ritz;
Andrej-Nikolai Spiess

Publication type:

Article

OnD-CRF: prediciting order and disorder in proteins conditional random fields.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1562, doi. 10.1093/bioinformatics/btn261

By:

Lixiao Wang;
Uwe H. Sauer

Publication type:

Article

lumi: a pipeline for processing Illumina microarray.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1547

By:

Pan Du;
Warren A. Kibbe;
Simon M. Lin

Publication type:

Article

A Bayesian estimator of protein-protein association probabilities.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1554, doi. 10.1093/bioinformatics/btn238

By:

Jason M. Gilmore;
Deanna L. Auberry;
Julia L. Sharp;
Amanda M. White;
Kevin K. Anderson;
Don S. Daly

Publication type:

Article

The Sleipnir library for computational functional genomics.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1559, doi. 10.1093/bioinformatics/btn237

By:

Curtis Huttenhower;
Mark Schroeder;
Maria D Chikina;
Olga G. Troyanskaya

Publication type:

Article

quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1552

By:

Samuel Neuenschwander;
Frédéric Hospital;
Frédéric Guillaume;
Jérôme Goudet

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i1, doi. 10.1093/bioinformatics/btn204

By:

Alfonso Valencia;
Ildefonso Cases

Publication type:

Article

An overview of the wcd EST clustering tool.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1542, doi. 10.1093/bioinformatics/btn203

By:

Scott Hazelhurst;
Winston Hide;
Zsuzsanna Lipták;
Ramon Nogueira;
Richard Starfield

Publication type:

Article

Microbial genotype-phenotype mapping by class association rule mining.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1523, doi. 10.1093/bioinformatics/btn210

By:

Makio Tamura;
Patrik Dhaeseleer

Publication type:

Article

Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1516, doi. 10.1093/bioinformatics/btn229

By:

Junil Kim;
Tae-Geon Kim;
Sung Hoon Jung;
Jeong-Rae Kim;
Taesung Park;
Pat Heslop-Harrison;
Kwang-Hyun Cho

Publication type:

Article

High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1498, doi. 10.1093/bioinformatics/btn216

By:

István A. Bogdán;
Jenny Rivers;
Robert J. Beynon;
Daniel Coca

Publication type:

Article

Malin: maximum likelihood analysis of intron evolution in eukaryotes.

Published in:: Bioinformatics, 2008, v. 24, n. 13, p. 1538, doi. 10.1093/bioinformatics/btn226
Publication type:: Article

FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1532, doi. 10.1093/bioinformatics/btn225

By:

Michiel Van Bel;
Yvan Saeys;
Yves Van de Peer

Publication type:

Article

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1503, doi. 10.1093/bioinformatics/btn218

By:

Bobbie-Jo M. Webb-Robertson;
William R. Cannon;
Christopher S. Oehmen;
Anuj R. Shah;
Vidhya Gurumoorthi;
Mary S. Lipton;
Katrina M. Waters

Publication type:

Article

PatMaN: rapid alignment of short sequences to large databases.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1530, doi. 10.1093/bioinformatics/btn223

By:

Kay Prüfer;
Udo Stenzel;
Michael Dannemann;
Richard E. Green;
Michael Lachmann;
Janet Kelso

Publication type:

Article

Discerning static and causal interactions in genome-wide reverse engineering problems.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1510, doi. 10.1093/bioinformatics/btn220

By:

Mattia Zampieri;
Nicola Soranzo;
Claudio Altafini

Publication type:

Article

ProBias: a web-server for the identification of user-specified types of compositionally biased segments in protein sequences.

Published in:: Bioinformatics, 2008, v. 24, n. 13, p. 1534, doi. 10.1093/bioinformatics/btn233
Publication type:: Article

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1540, doi. 10.1093/bioinformatics/btn230

By:

André Wehe;
Mukul S. Bansal;
J. Gordon Burleigh;
Oliver Eulenstein

Publication type:

Article

Classification of arrayCGH data using fused SVM.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i375, doi. 10.1093/bioinformatics/btn188

By:

Franck Rapaport;
Emmanuel Barillot;
Jean-Philippe Vert

Publication type:

Article

BLASTing small molecules--statistics and extreme statistics of chemical similarity scores.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i357, doi. 10.1093/bioinformatics/btn187

By:

Pierre Baldi;
Ryan W. Benz

Publication type:

Article

A maximum common substructure-based algorithm for searching and predicting drug-like compounds.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i366, doi. 10.1093/bioinformatics/btn186

By:

Yiqun Cao;
Tao Jiang;
Thomas Girke

Publication type:

Article

Assessing the functional structure of genomic data.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i330, doi. 10.1093/bioinformatics/btn160

By:

C. Huttenhower;
O.G. Troyanskaya

Publication type:

Article