Works matching IS 13674803 AND DT 2007 AND VI 23 AND IP 21

Results: 26

RAGPOOLS: RNA-As-Graph-Pools a web server for assisting the design of structured RNA pools for in vitro selection.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2959, doi. 10.1093/bioinformatics/btm439

By:

Namhee Kim;
Jin Sup Shin;
Shereef Elmetwaly;
Hin Hark Gan;
Tamar Schlick

Publication type:

Article

Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2934, doi. 10.1093/bioinformatics/btm430

By:

Atsushi Hijikata;
Hiroshi Kitamura;
Yayoi Kimura;
Ryo Yokoyama;
Yuichi Aiba;
Yanyuan Bao;
Shigeharu Fujita;
Koji Hase;
Shohei Hori;
Yasuyuki Ishii;
Osami Kanagawa;
Hiroshi Kawamoto;
Kazuya Kawano;
Haruhiko Koseki;
Masato Kubo;
Ai Kurita-Miki;
Tomohiro Kurosaki;
Kyoko Masuda;
Mitsumasa Nakata;
Keisuke Oboki

Publication type:

Article

Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2945, doi. 10.1093/bioinformatics/btm455

By:

Taishin Kin;
Yukiteru Ono

Publication type:

Article

2D NMR metabonomic analysis: a novel method for automated peak alignment.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2926, doi. 10.1093/bioinformatics/btm427

By:

Ming Zheng;
Peng Lu;
Yanzhou Liu;
Joseph Pease;
Jonathan Usuka;
Guochun Liao;
Gary Peltz

Publication type:

Article

Extending assembly of short DNA sequences to handle error.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2942, doi. 10.1093/bioinformatics/btm451

By:

William R. Jeck;
Josephine A. Reinhardt;
David A. Baltrus;
Matthew T. Hickenbotham;
Vincent Magrini;
Elaine R. Mardis;
Jeffery L. Dangl;
Corbin D. Jones

Publication type:

Article

CTree: comparison of clusters between phylogenetic trees made easy.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2952, doi. 10.1093/bioinformatics/btm410

By:

John Archer;
David L. Robertson

Publication type:

Article

Improved BLAST searches using longer words for protein seeding.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2949, doi. 10.1093/bioinformatics/btm479

By:

Sergey A. Shiryev;
Jason S. Papadopoulos;
Alejandro A. SchÃ¤ffer;
Richa Agarwala

Publication type:

Article

Clustal W and Clustal X version 2.0.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2947, doi. 10.1093/bioinformatics/btm404

By:

M.A. Larkin;
G. Blackshields;
N.P. Brown;
R. Chenna;
P.A. McGettigan;
H. McWilliam;
F. Valentin;
I.M. Wallace;
A. Wilm;
R. Lopez;
J.D. Thompson;
T.J. Gibson;
D.G. Higgins

Publication type:

Article

The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2954, doi. 10.1093/bioinformatics/btm466

By:

VÃctor Soria-Carrasco;
Gerard Talavera;
Javier Igea;
Jose Castresana

Publication type:

Article

Graph-based consensus clustering for class discovery from gene expression data.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2888, doi. 10.1093/bioinformatics/btm463

By:

Zhiwen Yu;
Hau-San Wong;
Hongqiang Wang

Publication type:

Article

Modeling protein loops with knowledge-based prediction of sequence-structure alignment.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2836, doi. 10.1093/bioinformatics/btm456

By:

Hung-Pin Peng;
An-Suei Yang

Publication type:

Article

Feature construction from synergic pairs to improve microarray-based classification.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2866, doi. 10.1093/bioinformatics/btm429

By:

Blaise Hanczar;
Jean-Daniel Zucker;
Corneliu Henegar;
Lorenza Saitta

Publication type:

Article

Moderated statistical tests for assessing differences in tag abundance.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2881, doi. 10.1093/bioinformatics/btm453

By:

Mark D. Robinson;
Gordon K. Smyth

Publication type:

Article

Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2910, doi. 10.1093/bioinformatics/btm483

By:

Sangeeta B. English;
Atul J. Butte

Publication type:

Article

Extracting three-way gene interactions from microarray data.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2903, doi. 10.1093/bioinformatics/btm482

By:

Jiexin Zhang;
Yuan Ji;
Li Zhang

Publication type:

Article

An improved algorithm for clustering gene expression data.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2859

By:

Sanghamitra Bandyopadhyay;
Anirban Mukhopadhyay;
Ujjwal Maulik

Publication type:

Article

Creating protein models from electron-density maps using particle-filtering methods.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2851, doi. 10.1093/bioinformatics/btm480

By:

Frank DiMaio;
Dmitry A. Kondrashov;
Eduard Bitto;
Ameet Soni;
Craig A. Bingman;
George N. Phillips;
Jude W. Shavlik

Publication type:

Article

Systematic order-dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips(R).

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2873, doi. 10.1093/bioinformatics/btm450

By:

Kathe E. Bjork;
Karen Kafadar

Publication type:

Article

Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2829, doi. 10.1093/bioinformatics/btm406

By:

Michael J. Sweredoski;
Kevin J. Donovan;
Bao D. Nguyen;
A.J. Shaka;
Pierre Baldi

Publication type:

Article

I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2897, doi. 10.1093/bioinformatics/btm478

By:

Willem Talloen;
Sepp Hochreiter;
Dhammika Amaratunga;
Luc Bijnens;
Stefan Kass;
Hinrich W.H. GÃ¶hlmann

Publication type:

Article

PFRES: protein fold classification by using evolutionary information and predicted secondary structure.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2843, doi. 10.1093/bioinformatics/btm475

By:

Ke Chen;
Lukasz Kurgan

Publication type:

Article

Accurate prediction of deleterious protein kinase polymorphisms.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2918, doi. 10.1093/bioinformatics/btm437

By:

Ali Torkamani;
Nicholas J. Schork

Publication type:

Article

OSCAR: One-class SVM for accurate recognition of cis-elements.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2823, doi. 10.1093/bioinformatics/btm473

By:

Bo Jiang;
Michael Q. Zhang;
Xuegong Zhang

Publication type:

Article

Optimization of primer design for the detection of variable genomic lesions in cancer.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2807, doi. 10.1093/bioinformatics/btm390

By:

Ali Bashir;
Yu-Tsueng Liu;
Benjamin J. Raphael;
Dennis Carson;
Vineet Bafna

Publication type:

Article

A novel knowledge-based approach to design inorganic-binding peptides.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2816, doi. 10.1093/bioinformatics/btm436

By:

Ersin Emre Oren;
Candan Tamerler;
Deniz Sahin;
Marketa Hnilova;
Urartu Ozgur Safak Seker;
Mehmet Sarikaya;
Ram Samudrala

Publication type:

Article

CREx: inferring genomic rearrangements based on common intervals.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2957, doi. 10.1093/bioinformatics/btm468

By:

Matthias Bernt;
Daniel Merkle;
Kai Ramsch;
Guido Fritzsch;
Marleen Perseke;
Detlef Bernhard;
Martin Schlegel;
Peter F. Stadler;
Martin Middendorf

Publication type:

Article