Works matching IS 13674803 AND DT 2007 AND VI 23 AND IP 13

Results: 92

Supervised reconstruction of biological networks with local models.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i57, doi. 10.1093/bioinformatics/btm204

By:

Kevin Bleakley;
Gérard Biau;
Jean-Philippe Vert

Publication type:

Article

Automated image analysis of protein localization in budding yeast.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i66, doi. 10.1093/bioinformatics/btm206

By:

Shann-Ching Chen;
Ting Zhao;
Geoffrey J. Gordon;
Robert F. Murphy

Publication type:

Article

In search of lost introns.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i87

By:

Miklós Csurös;
J. Andrew Holey;
Igor B. Rogozin

Publication type:

Article

A physical model for tiling array analysis.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i80, doi. 10.1093/bioinformatics/btm167

By:

Ho-Ryun Chung;
Dennis Kostka;
Martin Vingron

Publication type:

Article

A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i337

By:

Christopher J. Mungall;
David B. Emmert;
The FlyBase Consortium

Publication type:

Article

Nested effects models for high-dimensional phenotyping screens.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i305, doi. 10.1093/bioinformatics/btm178

By:

Florian Markowetz;
Dennis Kostka;
Olga G. Troyanskaya;
Rainer Spang

Publication type:

Article

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.

Published in:: Bioinformatics, 2007, v. 23, n. 13, p. i289, doi. 10.1093/bioinformatics/btm185
Publication type:: Article

Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i319, doi. 10.1093/bioinformatics/btm176

By:

Itay Mayrose;
Adi Doron-Faigenboim;
Eran Bacharach;
Tal Pupko

Publication type:

Article

Inferring protein DNA dependencies using motif alignments and mutual information.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i297, doi. 10.1093/bioinformatics/btm215

By:

Shaun Mahony;
Philip E. Auron;
Panayiotis V. Benos

Publication type:

Article

An ensemble framework for clustering protein protein interaction networks.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i29, doi. 10.1093/bioinformatics/btm212

By:

Sitaram Asur;
Duygu Ucar;
Srinivasan Parthasarathy

Publication type:

Article

Manual curation is not sufficient for annotation of genomic databases.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i41, doi. 10.1093/bioinformatics/btm229

By:

William A. Baumgartner;
K. Bretonnel Cohen;
Lynne M. Fox;
George Acquaah-Mensah;
Lawrence Hunter

Publication type:

Article

SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i359, doi. 10.1093/bioinformatics/btm170

By:

Oved Ourfali;
Tomer Shlomi;
Trey Ideker;
Eytan Ruppin;
Roded Sharan

Publication type:

Article

Biases induced by pooling samples in microarray experiments.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i313, doi. 10.1093/bioinformatics/btm182

By:

Tristan Mary-Huard;
Jean-Jacques Daudin;
Michela Baccini;
Annibale Biggeri;
Avner Bar-Hen

Publication type:

Article

Genomic characterization of perturbation sensitivity.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i354, doi. 10.1093/bioinformatics/btm172

By:

Jung Hun Ohn;
Jihun Kim;
Ju Han Kim

Publication type:

Article

Locomotif: from graphical motif description to RNA motif search.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i392, doi. 10.1093/bioinformatics/btm179

By:

Janina Reeder;
Jens Reeder;
Robert Giegerich

Publication type:

Article

Prediction of DNA-binding residues from sequence.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i347, doi. 10.1093/bioinformatics/btm174

By:

Yanay Ofran;
Venkatesh Mysore;
Burkhard Rost

Publication type:

Article

Translation initiation site prediction on a genomic scale: beauty in simplicity.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i418, doi. 10.1093/bioinformatics/btm177

By:

Yvan Saeys;
Thomas Abeel;
Sven Degroeve;
Yves Van de Peer

Publication type:

Article

Using dynamic programming to create isotopic distribution maps from mass spectra.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i328, doi. 10.1093/bioinformatics/btm198

By:

Sean McIlwain;
David Page;
Edward L. Huttlin;
Michael R. Sussman

Publication type:

Article

Polyploids, genome halving and phylogeny.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i433, doi. 10.1093/bioinformatics/btm169

By:

David Sankoff;
Chunfang Zheng;
Qian Zhu

Publication type:

Article

Connecting quantitative regulatory-network models to the genome.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i367, doi. 10.1093/bioinformatics/btm228

By:

Yue Pan;
Tim Durfee;
Joseph Bockhorst;
Mark Craven

Publication type:

Article

Reconstruction of highly heterogeneous gene-content evolution across the three domains of life.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i230, doi. 10.1093/bioinformatics/btm165

By:

Wataru Iwasaki;
Toshihisa Takagi

Publication type:

Article

A statistical method for alignment-free comparison of regulatory sequences.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i249, doi. 10.1093/bioinformatics/btm211

By:

Miriam R. Kantorovitz;
Gene E. Robinson;
Saurabh Sinha

Publication type:

Article

Dead-End Elimination with Backbone Flexibility.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i185, doi. 10.1093/bioinformatics/btm197

By:

Ivelin Georgiev;
Bruce R. Donald

Publication type:

Article

Identification of new drug classification terms in textual resources.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i264

By:

Corinna Kolárik;
Martin Hofmann-Apitius;
Marc Zimmermann;
Juliane Fluck

Publication type:

Article

Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: a lattice study.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i240, doi. 10.1093/bioinformatics/btm180

By:

Etai Jacob;
Amnon Horovitz;
Ron Unger

Publication type:

Article

A geometric approach for the alignment of liquid chromatography mass spectrometry data.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i273, doi. 10.1093/bioinformatics/btm209

By:

Eva Lange;
Clemens Gröpl;
Ole Schulz-Trieglaff;
Andreas Leinenbach;
Christian Huber;
Knut Reinert

Publication type:

Article

Spectrum: joint bayesian inference of population structure and recombination events.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i479, doi. 10.1093/bioinformatics/btm171

By:

Kyung-Ah Sohn;
Eric P. Xing

Publication type:

Article

Kinetics analysis methods for approximate folding landscapes.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i539, doi. 10.1093/bioinformatics/btm199

By:

Lydia Tapia;
Xinyu Tang;
Shawna Thomas;
Nancy M. Amato

Publication type:

Article

ISMB/ECCB 2007 Organization.

Published in:: Bioinformatics, 2007, v. 23, n. 13, p. i5, doi. 10.1093/bioinformatics/btm286
Publication type:: Article

Multiple alignment by aligning alignments.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i559, doi. 10.1093/bioinformatics/btm226

By:

Travis J. Wheeler;
John D. Kececioglu

Publication type:

Article

Information theory applied to the sparse gene ontology annotation network to predict novel gene function.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i529, doi. 10.1093/bioinformatics/btm195

By:

Ying Tao;
Lee Sam;
Jianrong Li;
Carol Friedman;
Yves A. Lussier

Publication type:

Article

Automatic genome-wide reconstruction of phylogenetic gene trees.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i549, doi. 10.1093/bioinformatics/btm193

By:

Ilan Wapinski;
Avi Pfeffer;
Nir Friedman;
Aviv Regev

Publication type:

Article

Reconstructing sibling relationships in wild populations.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i49, doi. 10.1093/bioinformatics/btm219

By:

Tanya Y. Berger-Wolf;
Saad I. Sheikh;
Bhaskar DasGupta;
Mary V. Ashley;
Isabel C. Caballero;
Wanpracha Chaovalitwongse;
S. Lahari Putrevu

Publication type:

Article

Gene selection via the BAHSIC family of algorithms.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i490, doi. 10.1093/bioinformatics/btm216

By:

Le Song;
Justin Bedo;
Karsten M. Borgwardt;
Arthur Gretton;
Alex Smola

Publication type:

Article

Computational modeling of Caenorhabditis elegans vulval induction.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i499, doi. 10.1093/bioinformatics/btm214

By:

Xiaoyun Sun;
Pengyu Hong

Publication type:

Article

From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i508, doi. 10.1093/bioinformatics/btm207

By:

Suman Sundaresh;
Arlo Randall;
Berkay Unal;
Jeannine M. Petersen;
John T. Belisle;
M. Gill Hartley;
Melanie Duffield;
Richard W. Titball;
D. Huw Davies;
Philip L. Felgner;
Pierre Baldi

Publication type:

Article

Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i569, doi. 10.1093/bioinformatics/btm164

By:

Song Wu;
Jie Yang;
Rongling Wu

Publication type:

Article

Annotating gene function by combining expression data with a modular gene network.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i468, doi. 10.1093/bioinformatics/btm173

By:

Motoki Shiga;
Ichigaku Takigawa;
Hiroshi Mamitsuka

Publication type:

Article

Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i519, doi. 10.1093/bioinformatics/btm181

By:

Marko Sysi-Aho;
Aki Vehtari;
Vidya R. Velagapudi;
Jukka Westerbacka;
Laxman Yetukuri;
Robert Bergholm;
Marja-Riitta Taskinen;
Hannele Yki-Järvinen;
Matej Oresic

Publication type:

Article

A graph-based approach to systematically reconstruct human transcriptional regulatory modules.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i577, doi. 10.1093/bioinformatics/btm227

By:

Xifeng Yan;
Michael R. Mehan;
Yu Huang;
Michael S. Waterman;
Philip S. Yu;
Xianghong Jasmine Zhou

Publication type:

Article

Homology search for genes.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i97, doi. 10.1093/bioinformatics/btm225

By:

Xuefeng Cui;
Tomás Vinar;
Brona Brejová;
Dennis Shasha;
Ming Li

Publication type:

Article

RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i72, doi. 10.1093/bioinformatics/btm224

By:

Xiaoyu Chen;
Timothy R. Hughes;
Quaid Morris

Publication type:

Article

Efficient parameter estimation for RNA secondary structure prediction.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i19, doi. 10.1093/bioinformatics/btm223

By:

Mirela Andronescu;
Anne Condon;
Holger H. Hoos;
David H. Mathews;
Kevin P. Murphy

Publication type:

Article

Systematic discovery of functional modules and context-specific functional annotation of human genome.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i222, doi. 10.1093/bioinformatics/btm222

By:

Yu Huang;
Haifeng Li;
Haiyan Hu;
Xifeng Yan;
Michael S. Waterman;
Haiyan Huang;
Xianghong Jasmine Zhou

Publication type:

Article

Bayesian association of haplotypes and non-genetic factors to regulatory and phenotypic variation in human populations.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i212, doi. 10.1093/bioinformatics/btm217

By:

Jim C. Huang;
Anitha Kannan;
John Winn

Publication type:

Article

Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i282, doi. 10.1093/bioinformatics/btm201

By:

Wei Keat Lim;
Kai Wang;
Celine Lefebvre;
Andrea Califano

Publication type:

Article

Adaptive torsion-angle quasi-statics: a general simulation method with applications to protein structure analysis and design.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i408, doi. 10.1093/bioinformatics/btm191

By:

Romain Rossi;
Mathieu Isorce;
Sandy Morin;
Julien Flocard;
Karthik Arumugam;
Serge Crouzy;
Michel Vivaudou;
Stephane Redon

Publication type:

Article

Learning to extract relations for protein annotation.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i256, doi. 10.1093/bioinformatics/btm168

By:

Jee-Hyub Kim;
Alex Mitchell;
Teresa K. Attwood;
Melanie Hilario

Publication type:

Article

Using genome-context data to identify specific types of functional associations in pathway/genome databases.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i205, doi. 10.1093/bioinformatics/btm213

By:

Michelle L. Green;
Peter D. Karp

Publication type:

Article

Modeling recurrent DNA copy number alterations in array CGH data.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i450, doi. 10.1093/bioinformatics/btm221

By:

Sohrab P. Shah;
Wan L. Lam;
Raymond T. Ng;
Kevin P. Murphy

Publication type:

Article