Works matching IS 13674803 AND DT 2005 AND VI 21 AND IP 9

Results: 68

Erratum.

Published in:: Bioinformatics, 2005, v. 21, n. 9, p. 2144, doi. 10.1093/bioinformatics/bti446
Publication type:: Article

Applications of beta-mixture models in bioinformatics.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2118

By:

Yuan Ji;
Chunlei Wu;
Ping Liu;
Jing Wang;
Kevin R. Coombes

Publication type:

Article

Q-SiteFinder: an energy-based method for the prediction of proteinligand binding sites.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1908

By:

Alasdair T. R. Laurie;
Richard M. Jackson

Publication type:

Article

GMAP: a genomic mapping and alignment program for mRNA and EST sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1859

By:

Thomas D. Wu;
Colin K. Watanabe

Publication type:

Article

Time accelerated Monte Carlo simulations of biological networks using the binomial t-leap method.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2136, doi. 10.1093/bioinformatics/bti308

By:

Abhijit Chatterjee;
Kapil Mayawala;
Jeremy S. Edwards;
Dionisios G. Vlachos

Publication type:

Article

A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1789, doi. 10.1093/bioinformatics/bti307

By:

Maria Stepanova;
Tatiana Tiazhelova;
Mikle Skoblov;
Ancha Baranova

Publication type:

Article

MPSS: an integrated database system for surveying a set of proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2142, doi. 10.1093/bioinformatics/bti306

By:

Pei Hao;
Wei-Zhong He;
Yin Huang;
Liang-Xiao Ma;
Ying Xu;
Hong Xi;
Chuan Wang;
Bo-Shu Liu;
Jin-Miao Wang;
Yi-Xue Li;
Yang Zhong

Publication type:

Article

Accurate extraction of functional associations between proteins based on common interaction partners and common domains.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2043, doi. 10.1093/bioinformatics/bti305

By:

Kinya Okada;
Shigehiko Kanaya;
Kiyoshi Asai

Publication type:

Article

ExPrimer: to design primers from exonexon junctions.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2091, doi. 10.1093/bioinformatics/bti304

By:

Kuljeet S. Sandhu;
Kshitish K. Acharya

Publication type:

Article

An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1853, doi. 10.1093/bioinformatics/bti303

By:

Robel Y. Kahsay;
Guang Gao;
Li Liao

Publication type:

Article

Evaluation of the gene-specific dye bias in cDNA microarray experiments.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1995, doi. 10.1093/bioinformatics/bti302

By:

Marie-Laure Martin-Magniette;
Julie Aubert;
Eric Cabannes;
Jean-Jacques Daudin

Publication type:

Article

Empirical Bayes screening of many p-values with applications to microarray studies.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1987, doi. 10.1093/bioinformatics/bti301

By:

Susmita Datta;
Somnath Datta

Publication type:

Article

SpecAlignprocessing and alignment of mass spectra datasets.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2088, doi. 10.1093/bioinformatics/bti300

By:

Jason W.H. Wong;
Gerard Cagney;
Hugh M. Cartwright

Publication type:

Article

Identification of GPI anchor attachment signals by a Kohonen self-organizing map.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1846, doi. 10.1093/bioinformatics/bti299

By:

Niklaus Fankhauser;
Pascal Mser

Publication type:

Article

DNA polymorphism detector: an automated tool that searches for allelic matches in public databases for discrepancies found in clone or cDNA sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2133, doi. 10.1093/bioinformatics/bti298

By:

Chih-Yu (Carol) Chang;
Joshua LaBaer

Publication type:

Article

Efficient implementation of a generalized pair hidden Markov model for comparative gene finding.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1782, doi. 10.1093/bioinformatics/bti297

By:

W. H. Majoros;
M. Pertea;
S. L. Salzberg

Publication type:

Article

BioIE: extracting informative sentences from the biomedical literature.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2138, doi. 10.1093/bioinformatics/bti296

By:

Anna Divoli;
Teresa K. Attwood

Publication type:

Article

SuperDrug: a conformational drug database.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1751, doi. 10.1093/bioinformatics/bti295

By:

Andrean Goede;
Mathias Dunkel

Publication type:

Article

Estimating misclassification error with small samples via bootstrap cross-validation.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1979

By:

Wenjiang J. Fu;
Raymond J. Carroll;
Suojin Wang

Publication type:

Article

TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2130, doi. 10.1093/bioinformatics/bti293

By:

David Posada;
Taylor J. Maxwell;
Alan R. Templeton

Publication type:

Article

Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1971, doi. 10.1093/bioinformatics/bti292

By:

Claudio Lottaz;
Rainer Spang

Publication type:

Article

PROTEIOS: an open source proteomics initiative.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2085

By:

Per Grdn;
Rikard Alm;
Jari Hkkinen

Publication type:

Article

A grid layout algorithm for automatic drawing of biochemical networks.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2036

By:

Weijiang Li;
Hiroyuki Kurata

Publication type:

Article

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2108, doi. 10.1093/bioinformatics/bti289

By:

Joachim Friedrich;
Thomas Dandekar;
Matthias Wolf;
Tobias Mller

Publication type:

Article

CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2116, doi. 10.1093/bioinformatics/bti288

By:

Sek Won Kong;
Kyu-Baek Hwang

Publication type:

Article

Small, fuzzy and interpretable gene expression based classifiers.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1964, doi. 10.1093/bioinformatics/bti287

By:

Staal A. Vinterbo;
Eun-Young Kim;
Lucila Ohno-Machado

Publication type:

Article

A linear programming approach for identifying a consensus sequence on DNA sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1838

By:

Han-Lin Li;
Chang-Jui Fu

Publication type:

Article

Concept-based annotation of enzyme classes.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2059, doi. 10.1093/bioinformatics/bti284

By:

Oliver Hofmann;
Dietmar Schomburg

Publication type:

Article

Gene finding for the helical cytokines.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1776, doi. 10.1093/bioinformatics/bti283

By:

Darrell Conklin;
Betty Haldeman;
Zeren Gao

Publication type:

Article

PowerMarker: an integrated analysis environment for genetic marker analysis.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2128, doi. 10.1093/bioinformatics/bti282

By:

Kejun Liu;
Spencer V. Muse

Publication type:

Article

Prediction of caspase cleavage sites using Bayesian bio-basis function neural networks.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1831, doi. 10.1093/bioinformatics/bti281

By:

Zheng Rong Yang

Publication type:

Article

Computational identification of human mitochondrial proteins based on homology to yeast mitochondrially targeted proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1825, doi. 10.1093/bioinformatics/bti280

By:

J. M. Cameron;
T. Hurd;
B. H. Robinson

Publication type:

Article

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1815, doi. 10.1093/bioinformatics/bti279

By:

Jakob Hull Havgaard;
Rune B. Lyngs;
Gary D. Stormo;
Jan Gorodkin

Publication type:

Article

Modeling of signalresponse cascades using decision tree analysis.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2027, doi. 10.1093/bioinformatics/bti278

By:

Sampsa Hautaniemi;
Sourabh Kharait;
Akihiro Iwabu;
Alan Wells;
Douglas A. Lauffenburger

Publication type:

Article

PIBASE: a comprehensive database of structurally defined protein interfaces.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1901, doi. 10.1093/bioinformatics/bti277

By:

Fred P. Davis;
Andrej Sali

Publication type:

Article

PERMOL: restraint-based protein homology modeling using DYANA or CNS.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2110

By:

Andreas Mglich;
Daniel Weinfurtner;
Wolfram Gronwald;
Till Maurer;
Hans Robert Kalbitzer

Publication type:

Article

Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1958

By:

Xiaojun Di;
Hajime Matsuzaki;
Teresa A. Webster;
Earl Hubbell;
Guoying Liu;
Shoulian Dong;
Dan Bartell;
Jing Huang;
Richard Chiles;
Geoffrey Yang;
Mei-mei Shen;
David Kulp;
Giulia C. Kennedy;
Rui Mei;
Keith W. Jones;
Simon Cawley

Publication type:

Article

Mtreemix: a software package for learning and using mixture models of mutagenetic trees.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2106, doi. 10.1093/bioinformatics/bti274

By:

Niko Beerenwinkel;
Rolf Kaiser;
Daniel Hoffmann;
Joachim Selbig;
Thomas Lengauer

Publication type:

Article

Online Predicted Human Interaction Database.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2076, doi. 10.1093/bioinformatics/bti273

By:

Kevin R. Brown;
Igor Jurisica

Publication type:

Article

Integrative data analysis for functional prediction: a multi-objective optimization approach.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2099, doi. 10.1093/bioinformatics/bti272

By:

F. Azuaje

Publication type:

Article

IntegratedMap: a Web interface for integrating genetic map data.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2126, doi. 10.1093/bioinformatics/bti271

By:

Hongyu Yang;
Hongyu Wang;
Alan R. Gingle

Publication type:

Article

Use of within-array replicate spots for assessing differential expression in microarray experiments.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2067, doi. 10.1093/bioinformatics/bti270

By:

Gordon K. Smyth;
Jolle Michaud;
Hamish S. Scott

Publication type:

Article

EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2140, doi. 10.1093/bioinformatics/bti269

By:

Pedro A. Reche;
Hong Zhang;
John-Paul Glutting;
Ellis L. Reinherz

Publication type:

Article

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2049, doi. 10.1093/bioinformatics/bti268

By:

R. Jelier;
G. Jenster;
L. C. J. Dorssers;
C. C. van der Eijk;
E. M. van Mulligen;
B. Mons;
J. A. Kors

Publication type:

Article

Testing association of a pathway with survival using gene expression data.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1950, doi. 10.1093/bioinformatics/bti267

By:

Jelle J. Goeman;
Jan Oosting;
Anne-Marie Cleton-Jansen;
Jakob K. Anninga;
Hans C. van Houwelingen

Publication type:

Article

Prediction of unfolded segments in a protein sequence based on amino acid composition.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1891, doi. 10.1093/bioinformatics/bti266

By:

Karen Coeytaux;
Anne Poupon

Publication type:

Article

ALOHOMORA: a tool for linkage analysis using 10K SNP array data.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2123

By:

Franz Rschendorf;
Peter Nrnberg

Publication type:

Article

ProtTest: selection of best-fit models of protein evolution.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2104, doi. 10.1093/bioinformatics/bti263

By:

Federico Abascal;
Rafael Zardoya;
David Posada

Publication type:

Article

Inference of missing SNPs and information quantity measurements for haplotype blocks.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2001

By:

Shih-Chieh Su;
C.-C. Jay Kuo;
Ting Chen

Publication type:

Article

Significance analysis of functional categories in gene expression studies: a structured permutation approach.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 1943, doi. 10.1093/bioinformatics/bti260

By:

William T. Barry;
Andrew B. Nobel;
Fred A. Wright

Publication type:

Article