Works matching IS 13674803 AND DT 2005 AND VI 21 AND IP 7

Results: 66

Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1129, doi. 10.1093/bioinformatics/bti149

By:

Yoram Ben-Shaul;
Hagai Bergman;
Hermona Soreq

Publication type:

Article

Quantile smoothing of array CGH data.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1146, doi. 10.1093/bioinformatics/bti148

By:

Paul H. C. Eilers

Publication type:

Article

CRAVE: a database, middleware and visualization system for phenotype ontologies.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1257, doi. 10.1093/bioinformatics/bti147

By:

Georgios V. Gkoutos

Publication type:

Article

CyDAS: a cytogenetic data analysis system.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1282, doi. 10.1093/bioinformatics/bti146

By:

Bernhard Hiller;
Jutta Bradtke;
Harald Balz;
Harald Rieder

Publication type:

Article

Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1219, doi. 10.1093/bioinformatics/bti145

By:

Ina Koch;
Björn H. Junker;
Monika Heiner

Publication type:

Article

Solving and analyzing side-chain positioning problems using linear and integer programming.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1028

By:

Mona Singh

Publication type:

Article

Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1284, doi. 10.1093/bioinformatics/bti143

By:

Pawan K. Dhar

Publication type:

Article

Multiple sequence alignment with user-defined constraints at GOBICS.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1271, doi. 10.1093/bioinformatics/bti142

By:

Burkhard Morgenstern;
Nadine Werner;
Sonja J. Prohaska;
Rasmus Steinkamp;
Isabelle Schneider;
Amarendran R. Subramanian;
Peter F. Stadler;
Jan Weyer-Menkhoff

Publication type:

Article

PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1280, doi. 10.1093/bioinformatics/bti141

By:

Gilles Caraux;
Sylvie Pinloche

Publication type:

Article

Probabilities of spurious connections in gene networks: application to expression time series.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1121, doi. 10.1093/bioinformatics/bti140

By:

David R. Bickel

Publication type:

Article

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1274, doi. 10.1093/bioinformatics/bti139

By:

D. Paraskevis;
K. Deforche;
P. Lemey;
G. Magiorkinis;
A. Hatzakis;
A.-M. Vandamme

Publication type:

Article

BRAGI: linking and visualization of database information in a 3D viewer and modeling tool.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1291, doi. 10.1093/bioinformatics/bti138

By:

Joachim Reichelt;
Guido Dieterich;
Marsel Kvesic;
Dietmar Schomburg;
Dirk W. Heinz

Publication type:

Article

ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1246, doi. 10.1093/bioinformatics/bti137

By:

Julie Chabalier;
Cécile Capponi;
Yves Quentin;
Gwennaele Fichant

Publication type:

Article

AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 837, doi. 10.1093/bioinformatics/bti136

By:

Alex V. Kochetov

Publication type:

Article

Predicting fold novelty based on ProtoNet hierarchical classification.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1020, doi. 10.1093/bioinformatics/bti135

By:

Ilona Kifer;
Ori Sasson;
Michal Linial

Publication type:

Article

Primaclade—a flexible tool to find conserved PCR primers across multiple species.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1263

By:

Simon T. Malcomber;
Andrew N. Doust

Publication type:

Article

Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1138, doi. 10.1093/bioinformatics/bti133

By:

Sven Bilke

Publication type:

Article

Accurate identification of alternatively spliced exons using support vector machine.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 897, doi. 10.1093/bioinformatics/bti132

By:

Gideon Dror;
Rotem Sorek;
Ron Shamir

Publication type:

Article

Intervention in context-sensitive probabilistic Boolean networks.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1211, doi. 10.1093/bioinformatics/bti131

By:

Ranadip Pal;
Aniruddha Datta;
Michael L. Bittner;
Edward R. Dougherty

Publication type:

Article

NetAcet: prediction of N-terminal acetylation sites.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1269

By:

Nikolaj Blom

Publication type:

Article

A parallel graph decomposition algorithm for DNA sequencing with nanopores.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 889, doi. 10.1093/bioinformatics/bti129

By:

Shahid H. Bokhari;
Jon R. Sauer

Publication type:

Article

Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1010

By:

Christopher Bystroff

Publication type:

Article

An improved algorithm for stoichiometric network analysis: theory and applications.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1203, doi. 10.1093/bioinformatics/bti127

By:

R. Urbanczik;
C. Wagner

Publication type:

Article

A simple statistical method for discriminating outer membrane proteins with better accuracy.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 961, doi. 10.1093/bioinformatics/bti126

By:

M. Michael Gromiha

Publication type:

Article

Protein homology detection by HMM–HMM comparison.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 951, doi. 10.1093/bioinformatics/bti125

By:

Johannes Söding

Publication type:

Article

Validation of alternative methods of data normalization in gene co-expression studies.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1112, doi. 10.1093/bioinformatics/bti124

By:

Antonio Reverter

Publication type:

Article

Operon prediction without a training set.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 880, doi. 10.1093/bioinformatics/bti123

By:

B. P. Westover;
J. D. Buhler;
J. L. Sonnenburg;
J. I. Gordon

Publication type:

Article

MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1265

By:

Jian Xu;
Jeffrey I. Gordon

Publication type:

Article

TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1276

By:

István Simon

Publication type:

Article

A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1278, doi. 10.1093/bioinformatics/bti120

By:

Victor E. Gerth;
Peter D. Vize

Publication type:

Article

Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1194

By:

Sriram Neelamegham

Publication type:

Article

Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1002, doi. 10.1093/bioinformatics/bti117

By:

Erik Sandelin

Publication type:

Article

Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1189

By:

Dietmar Schomburg

Publication type:

Article

Classification using partial least squares with penalized logistic regression.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1104

By:

Sophie Lambert-Lacroix

Publication type:

Article

GoArrays: highly dynamic and efficient microarray probe design.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1094, doi. 10.1093/bioinformatics/bti112

By:

Sébastien Rimour;
David Hill;
Cécile Militon;
Pierre Peyret

Publication type:

Article

In silico gene function prediction using ontology-based pattern identification.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1237, doi. 10.1093/bioinformatics/bti111

By:

Yingyao Zhou;
Jason A. Young;
Andrey Santrosyan;
Kaisheng Chen;
S. Frank Yan;
Elizabeth A. Winzeler

Publication type:

Article

An alternative model of amino acid replacement.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 975, doi. 10.1093/bioinformatics/bti109

By:

Gavin E. Crooks

Publication type:

Article

Identifying differentially expressed genes from microarray experiments via statistic synthesis.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1084, doi. 10.1093/bioinformatics/bti108

By:

Yee Hwa Yang;
Yuanyuan Xiao

Publication type:

Article

Theoretical and practical advances in genome halving.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 869, doi. 10.1093/bioinformatics/bti107

By:

Peng Yin;
Alexander J. Hartemink

Publication type:

Article

Normalization of two-channel microarray experiments: a semiparametric approach.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1078, doi. 10.1093/bioinformatics/bti105

By:

J. E. Eckel;
C. Gennings;
T. M. Therneau;
L. D. Burgoon;
D. R. Boverhof;
T. R. Zacharewski

Publication type:

Article

Predicting protein localization in budding Yeast.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 944, doi. 10.1093/bioinformatics/bti104

By:

Kuo-Chen Chou;
Yu-Dong Cai

Publication type:

Article

Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 860

By:

Royston Goodacre

Publication type:

Article

hp-DPI: Helicobacter pylori Database of Protein Interactomes—embracing experimental and inferred interactions.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1288, doi. 10.1093/bioinformatics/bti101

By:

Chung-Yen Lin

Publication type:

Article

DPRml: distributed phylogeny reconstruction by maximum likelihood.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 969, doi. 10.1093/bioinformatics/bti100

By:

T. M. Keane;
T. J. Naughton;
S. A. A. Travers;
J. O. McInerney;
G. P. McCormack

Publication type:

Article

Evolutionary optimization with data collocation for reverse engineering of biological networks.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1180

By:

Feng-Sheng Wang

Publication type:

Article

Finding regulatory modules through large-scale gene-expression data analysis.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1172, doi. 10.1093/bioinformatics/bti096

By:

M. Kloster;
C. Tang;
N.S. Wingreen

Publication type:

Article

Clustering of gene expression data using a local shape-based similarity measure.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1069

By:

Rajarajeswari Balasubramaniyan;
Eyke Hüllermeier;
Nils Weskamp;
Jörg Kämper

Publication type:

Article

Extracting relations between promoter sequences and their strengths from microarray data.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1062, doi. 10.1093/bioinformatics/bti094

By:

Hisanori Kiryu;
Taku Oshima;
Kiyoshi Asai

Publication type:

Article

Comparison of computational methods for the identification of cell cycle-regulated genes.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1164, doi. 10.1093/bioinformatics/bti093

By:

Ulrik de Lichtenberg;
Lars Juhl Jensen

Publication type:

Article

A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1055

By:

Yuan Ji;
Kam-Wah Tsui;
KyungMann Kim

Publication type:

Article