Works matching IS 13674803 AND DT 2005 AND VI 21 AND IP 7
Results: 66
Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1129, doi. 10.1093/bioinformatics/bti149
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Quantile smoothing of array CGH data.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1146, doi. 10.1093/bioinformatics/bti148
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CRAVE: a database, middleware and visualization system for phenotype ontologies.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1257, doi. 10.1093/bioinformatics/bti147
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CyDAS: a cytogenetic data analysis system.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1282, doi. 10.1093/bioinformatics/bti146
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Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1219, doi. 10.1093/bioinformatics/bti145
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Solving and analyzing side-chain positioning problems using linear and integer programming.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1028
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ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1246, doi. 10.1093/bioinformatics/bti137
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Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1284, doi. 10.1093/bioinformatics/bti143
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PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1280, doi. 10.1093/bioinformatics/bti141
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Probabilities of spurious connections in gene networks: application to expression time series.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1121, doi. 10.1093/bioinformatics/bti140
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SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1274, doi. 10.1093/bioinformatics/bti139
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BRAGI: linking and visualization of database information in a 3D viewer and modeling tool.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1291, doi. 10.1093/bioinformatics/bti138
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Multiple sequence alignment with user-defined constraints at GOBICS.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1271, doi. 10.1093/bioinformatics/bti142
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AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context.
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- Bioinformatics, 2005, v. 21, n. 7, p. 837, doi. 10.1093/bioinformatics/bti136
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Predicting fold novelty based on ProtoNet hierarchical classification.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1020, doi. 10.1093/bioinformatics/bti135
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Primaclade—a flexible tool to find conserved PCR primers across multiple species.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1263
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Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1138, doi. 10.1093/bioinformatics/bti133
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Accurate identification of alternatively spliced exons using support vector machine.
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- Bioinformatics, 2005, v. 21, n. 7, p. 897, doi. 10.1093/bioinformatics/bti132
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Intervention in context-sensitive probabilistic Boolean networks.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1211, doi. 10.1093/bioinformatics/bti131
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NetAcet: prediction of N-terminal acetylation sites.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1269
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A parallel graph decomposition algorithm for DNA sequencing with nanopores.
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- Bioinformatics, 2005, v. 21, n. 7, p. 889, doi. 10.1093/bioinformatics/bti129
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Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1010
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An improved algorithm for stoichiometric network analysis: theory and applications.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1203, doi. 10.1093/bioinformatics/bti127
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A simple statistical method for discriminating outer membrane proteins with better accuracy.
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- Bioinformatics, 2005, v. 21, n. 7, p. 961, doi. 10.1093/bioinformatics/bti126
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Protein homology detection by HMM–HMM comparison.
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- Bioinformatics, 2005, v. 21, n. 7, p. 951, doi. 10.1093/bioinformatics/bti125
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Validation of alternative methods of data normalization in gene co-expression studies.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1112, doi. 10.1093/bioinformatics/bti124
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Operon prediction without a training set.
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- Bioinformatics, 2005, v. 21, n. 7, p. 880, doi. 10.1093/bioinformatics/bti123
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MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1265
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TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1276
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A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1278, doi. 10.1093/bioinformatics/bti120
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Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1194
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Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1002, doi. 10.1093/bioinformatics/bti117
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Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).
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- Bioinformatics, 2005, v. 21, n. 7, p. 1189
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Classification using partial least squares with penalized logistic regression.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1104
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GoArrays: highly dynamic and efficient microarray probe design.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1094, doi. 10.1093/bioinformatics/bti112
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In silico gene function prediction using ontology-based pattern identification.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1237, doi. 10.1093/bioinformatics/bti111
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An alternative model of amino acid replacement.
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- Bioinformatics, 2005, v. 21, n. 7, p. 975, doi. 10.1093/bioinformatics/bti109
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Identifying differentially expressed genes from microarray experiments via statistic synthesis.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1084, doi. 10.1093/bioinformatics/bti108
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Theoretical and practical advances in genome halving.
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- Bioinformatics, 2005, v. 21, n. 7, p. 869, doi. 10.1093/bioinformatics/bti107
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- Article
Normalization of two-channel microarray experiments: a semiparametric approach.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1078, doi. 10.1093/bioinformatics/bti105
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Predicting protein localization in budding Yeast.
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- Bioinformatics, 2005, v. 21, n. 7, p. 944, doi. 10.1093/bioinformatics/bti104
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Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data.
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- Bioinformatics, 2005, v. 21, n. 7, p. 860
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hp-DPI: Helicobacter pylori Database of Protein Interactomes—embracing experimental and inferred interactions.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1288, doi. 10.1093/bioinformatics/bti101
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DPRml: distributed phylogeny reconstruction by maximum likelihood.
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- Bioinformatics, 2005, v. 21, n. 7, p. 969, doi. 10.1093/bioinformatics/bti100
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Evolutionary optimization with data collocation for reverse engineering of biological networks.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1180
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Finding regulatory modules through large-scale gene-expression data analysis.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1172, doi. 10.1093/bioinformatics/bti096
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Clustering of gene expression data using a local shape-based similarity measure.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1069
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Extracting relations between promoter sequences and their strengths from microarray data.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1062, doi. 10.1093/bioinformatics/bti094
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Comparison of computational methods for the identification of cell cycle-regulated genes.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1164, doi. 10.1093/bioinformatics/bti093
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A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1055
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