Works matching IS 13674803 AND DT 2005 AND VI 21 AND IP 10

Results: 72

Erratum.

Published in:: Bioinformatics, 2005, v. 21, n. 10, p. 2572, doi. 10.1093/bioinformatics/bti472
Publication type:: Article

A novel approach for clustering proteomics data using Bayesian fast Fourier transform.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2210, doi. 10.1093/bioinformatics/bti383

By:

Halima Bensmail;
Jennifer Golek;
Michelle M. Moody;
John O. Semmes;
Abdelali Haoudi

Publication type:

Article

A non-stationary model for functional mapping of complex traits.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2469, doi. 10.1093/bioinformatics/bti382

By:

Wei Zhao;
Ying Q. Chen;
George Casella;
James M. Cheverud;
Rongling Wu

Publication type:

Article

Using the biological taxonomy to access biological literature with PathBinderH.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2560, doi. 10.1093/bioinformatics/bti381

By:

J. Ding;
K. Viswanathan;
D. Berleant;
L. Hughes;
E. S. Wurtele;
D. Ashlock;
J. A. Dickerson;
A. Fulmer;
P. S. Schnable

Publication type:

Article

MIPS bacterial genomes functional annotation benchmark dataset.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2520, doi. 10.1093/bioinformatics/bti380

By:

Igor V. Tetko

Publication type:

Article

A fractional programming approach to efficient DNA melting temperature calculation.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2375, doi. 10.1093/bioinformatics/bti379

By:

Markus Leber;
Lars Kaderali;
Alexander Schönhuth;
Rainer Schrader

Publication type:

Article

Characterizing dye bias in microarray experiments.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2430, doi. 10.1093/bioinformatics/bti378

By:

K. K. Dobbin;
E. S. Kawasaki;
D. W. Petersen;
R. M. Simon

Publication type:

Article

SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2517, doi. 10.1093/bioinformatics/bti377

By:

Fengkai Zhang;
Zhongming Zhao

Publication type:

Article

Identification and measurement of neighbor-dependent nucleotide substitution processes.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2322, doi. 10.1093/bioinformatics/bti376

By:

Peter F. Arndt;
Terence Hwa

Publication type:

Article

Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2161, doi. 10.1093/bioinformatics/bti375

By:

Prachee Prakash;
Sailu Yellaboina;
Akash Ranjan;
Seyed E. Hasnain

Publication type:

Article

Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2287, doi. 10.1093/bioinformatics/bti374

By:

Robel Y. Kahsay;
Guoli Wang;
Guang Gao;
Li Liao;
Roland Dunbrack

Publication type:

Article

Partition-distance via the assignment problem.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2463, doi. 10.1093/bioinformatics/bti373

By:

Dmitry A. Konovalov

Publication type:

Article

Prediction of subcellular localization using sequence-biased recurrent networks.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2279, doi. 10.1093/bioinformatics/bti372

By:

Mikael Bodén

Publication type:

Article

The mutated subsequence problem and locating conserved genes.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2271, doi. 10.1093/bioinformatics/bti371

By:

H. L. Chan;
T. W. Lam;
W. K. Sung;
Prudence W. H. Wong;
S. M. Yiu;
X. Fan

Publication type:

Article

Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2200, doi. 10.1093/bioinformatics/bti370

By:

J. S. Yu;
S. Ongarello;
R. Fiedler;
X. W. Chen;
G. Toffolo;
C. Cobelli;
Z. Trajanoski

Publication type:

Article

Classification of bacterial species from proteomic data using combinatorial approaches incorporating artificial neural networks, cluster analysis and principal components analysis.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2191, doi. 10.1093/bioinformatics/bti368

By:

L. Lancashire;
O. Schmid;
H. Shah;
G. Ball

Publication type:

Article

Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2424, doi. 10.1093/bioinformatics/bti367

By:

Christian H. Busold;
Stefan Winter;
Nicole Hauser;
Andrea Bauer;
Jürgen Dippon;
Jörg D. Hoheisel;
Kurt Fellenberg

Publication type:

Article

PSIbase: a database of Protein Structural Interactome map (PSIMAP).

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2541, doi. 10.1093/bioinformatics/bti366

By:

Sungsam Gong;
Giseok Yoon;
Insoo Jang;
Dan Bolser;
Panos Dafas;
Michael Schroeder;
Hansol Choi;
Yoobok Cho;
Kyungsook Han;
Sunghoon Lee;
Hwanho Choi;
Michael Lappe;
Liisa Holm;
Sangsoo Kim;
Donghoon Oh;
Jonghwa Bhak

Publication type:

Article

Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2185

By:

Yan Cui

Publication type:

Article

Mega2: data-handling for facilitating genetic linkage and association analyses.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2556, doi. 10.1093/bioinformatics/bti364

By:

Nandita Mukhopadhyay;
Lee Almasy;
Mark Schroeder;
William P. Mulvihill;
Daniel E. Weeks

Publication type:

Article

Prediction of protein interdomain linker regions by a hidden Markov model.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2264, doi. 10.1093/bioinformatics/bti363

By:

Kyounghwa Bae;
Bani K. Mallick;
Christine G. Elsik

Publication type:

Article

Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2177, doi. 10.1093/bioinformatics/bti362

By:

Jayson Falkner

Publication type:

Article

Non-additivity in protein–DNA binding.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2254, doi. 10.1093/bioinformatics/bti361

By:

R. A. O'Flanagan;
G. Paillard;
R. Lavery;
A. M. Sengupta

Publication type:

Article

CoC: a database of universally conserved residues in protein folds.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2539, doi. 10.1093/bioinformatics/bti360

By:

Jason E. Donald;
Isaac A. Hubner;
Veronica M. Rotemberg;
Eugene I. Shakhnovich;
Leonid A. Mirny

Publication type:

Article

ADAPT: a database of affymetrix probesets and transcripts.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2552

By:

Crispin J. Miller

Publication type:

Article

Improved method for predicting β-turn using support vector machine.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2370

By:

William J. Welsh

Publication type:

Article

ArrayCyGHt: a web application for analysis and visualization of array-CGH data.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2554, doi. 10.1093/bioinformatics/bti357

By:

Su Young Kim;
Suk Woo Nam;
Sug Hyung Lee;
Won Sang Park;
Nam Jin Yoo;
Jung Young Lee;
Yeun-Jun Chung

Publication type:

Article

WebAllergen: a web server for predicting allergenic proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2570

By:

Kuo-Bin Li

Publication type:

Article

Gene-Expression Omnibus integration and clustering Tools in SeqExpress.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2550, doi. 10.1093/bioinformatics/bti355

By:

John Boyle

Publication type:

Article

SNP discovery using advanced algorithms and neural networks.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2528, doi. 10.1093/bioinformatics/bti354

By:

Per Unneberg;
Michael Strömberg

Publication type:

Article

Multiple flexible structure alignment using partial order graphs.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2362

By:

Yuzhen Ye;
Adam Godzik

Publication type:

Article

Haplotype reconstruction from SNP fragments by minimum error correction.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2456, doi. 10.1093/bioinformatics/bti352

By:

Rui-Sheng Wang;
Ling-Yun Wu;
Zhen-Ping Li;
Xiang-Sun Zhang

Publication type:

Article

RNA tertiary structure determination: NOE pathways construction by tabu search.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2356, doi. 10.1093/bioinformatics/bti351

By:

Jacek Blazewicz;
Marta Szachniuk;
Adam Wojtowicz

Publication type:

Article

PLATCOM: a Platform for Computational Comparative Genomics.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2514, doi. 10.1093/bioinformatics/bti350

By:

Kwangmin Choi;
Yu Ma;
Jeong-Heyon Choi;
Sun Kim

Publication type:

Article

Predicting a set of minimal free energy RNA secondary structures common to two sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2246, doi. 10.1093/bioinformatics/bti349

By:

David H. Mathews

Publication type:

Article

REVCOM: a robust Bayesian method for evolutionary rate estimation.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2315, doi. 10.1093/bioinformatics/bti347

By:

Andrew J. Bordner

Publication type:

Article

Self-organizing and self-correcting classifications of biological data.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2309, doi. 10.1093/bioinformatics/bti346

By:

George M. Garrity;
Timothy G. Lilburn

Publication type:

Article

Collateral missing value imputation: a new robust missing value estimation algorithm for microarray data.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2417

By:

Muhammad Shoaib B. Sehgal

Publication type:

Article

Object-oriented biological system integration: a SARS coronavirus example.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2502, doi. 10.1093/bioinformatics/bti344

By:

Daniel Shegogue;
W. Jim Zheng

Publication type:

Article

A web-based tool for principal component and significance analysis of microarray data.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2548

By:

Minoru S. H. Ko

Publication type:

Article

Mapping genome–genome epistasis: a high-dimensional model.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2447

By:

Rongling Wu

Publication type:

Article

Background correction for cDNA microarray images using the TV+L1 model.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2410, doi. 10.1093/bioinformatics/bti341

By:

Wotao Yin;
Terrence Chen;
Sean Xiang Zhou;
Amit Chakraborty

Publication type:

Article

An evolution based classifier for prediction of protein interfaces without using protein structures.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2496

By:

I. Mihalek;
O. Lichtarge

Publication type:

Article

Selective integration of multiple biological data for supervised network inference.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2488, doi. 10.1093/bioinformatics/bti339

By:

Tsuyoshi Kato;
Koji Tsuda;
Kiyoshi Asai

Publication type:

Article

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2347

By:

Janet M. Thornton

Publication type:

Article

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2240, doi. 10.1093/bioinformatics/bti336

By:

A. V. Favorov;
M. S. Gelfand;
A. V. Gerasimova;
D. A. Ravcheev;
A. A. Mironov;
V. J. Makeev

Publication type:

Article

A word-oriented approach to alignment validation.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2230

By:

Mark A. Ragan

Publication type:

Article

DATF: a database of Arabidopsis transcription factors.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2568, doi. 10.1093/bioinformatics/bti334

By:

Anyuan Guo;
Kun He

Publication type:

Article

AutoMotif server: prediction of single residue post-translational modifications in proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2525, doi. 10.1093/bioinformatics/bti333

By:

Dariusz Plewczynski;
Adrian Tkacz;
Lucjan Stanislaw Wyrwicz;
Leszek Rychlewski

Publication type:

Article

ESTviewer: a web interface for visualizing mouse, rat, cattle, pig and chicken conserved ESTs in human genes and human alternatively spliced variants.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2510, doi. 10.1093/bioinformatics/bti332

By:

Feng-Chi Chen;
Trees-Juen Chuang

Publication type:

Article