Works matching IS 13674803 AND DT 2005 AND VI 21 AND IP 1

Results: 78

Author Index.

Published in:: Bioinformatics, 2005, v. 21, n. 1, p. i509, doi. 10.1093/bioinformatics/bti1058
Publication type:: Article

ISMB 2005.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i1, doi. 10.1093/bioinformatics/bti1057

By:

H. V. Jagadish;
David States;
Burkhard Rost

Publication type:

Article

ISMB 2005 Organization.

Published in:: Bioinformatics, 2005, v. 21, n. 1, p. i3, doi. 10.1093/bioinformatics/bti1056
Publication type:: Article

Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i359, doi. 10.1093/bioinformatics/bti1055

By:

S. Joshua Swamidass;
Jonathan Chen

Publication type:

Article

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i302, doi. 10.1093/bioinformatics/bti1054

By:

Elena Nabieva;
Kam Jim;
Amit Agarwal;
Bernard Chazelle;
Mona Singh

Publication type:

Article

RASE: recognition of alternatively spliced exons in C.elegans.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i369, doi. 10.1093/bioinformatics/bti1053

By:

G. Rätsch;
S. Sonnenburg;
B. Schölkopf

Publication type:

Article

Automatic detection of subsystem/pathway variants in genome analysis.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i478

By:

Yuzhen Ye;
Andrei Osterman;
Ross Overbeek;
Adam Godzik

Publication type:

Article

Conservative extraction of over-represented extensible motifs.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i9, doi. 10.1093/bioinformatics/bti1051

By:

Alberto Apostolico;
Matteo Comin;
Laxmi Parida

Publication type:

Article

Search for folding nuclei in native protein structures.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i394, doi. 10.1093/bioinformatics/bti1050

By:

Alena Shmygelska

Publication type:

Article

Mining coherent dense subgraphs across massive biological networks for functional discovery.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i213

By:

Haiyan Hu;
Xifeng Yan;
Yu Huang;
Jiawei Han;
Xianghong Jasmine Zhou

Publication type:

Article

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i19, doi. 10.1093/bioinformatics/bti1048

By:

Grégory Batt;
Delphine Ropers;
Hidde de Jong;
Johannes Geiselmann;
Radu Mateescu;
Michel Page;
Dominique Schneider

Publication type:

Article

Predicting the in vivo signature of human gene regulatory sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i338

By:

William Stafford Noble;
Scott Kuehn;
Robert Thurman;
Man Yu;
John Stamatoyannopoulos

Publication type:

Article

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i274

By:

X. Shirley Liu

Publication type:

Article

GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i222, doi. 10.1093/bioinformatics/bti1045

By:

Jim C. Huang;
Quaid D. Morris;
Timothy R. Hughes;
Brendan J. Frey

Publication type:

Article

Computing the P-value of the information content from an alignment of multiple sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i311, doi. 10.1093/bioinformatics/bti1044

By:

Niranjan Nagarajan;
Neil Jones;
Uri Keich

Publication type:

Article

Mining ChIP-chip data for transcription factor and cofactor binding sites.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i403, doi. 10.1093/bioinformatics/bti1043

By:

Andrew D. Smith;
Pavel Sumazin;
Debopriya Das;
Michael Q. Zhang

Publication type:

Article

Statistics of local multiple alignments.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i344, doi. 10.1093/bioinformatics/bti1042

By:

Amol Prakash

Publication type:

Article

Multi-way clustering of microarray data using probabilistic sparse matrix factorization.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i144, doi. 10.1093/bioinformatics/bti1041

By:

Delbert Dueck

Publication type:

Article

ExonHunter: a comprehensive approach to gene finding.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i57, doi. 10.1093/bioinformatics/bti1040

By:

Broňa Brejová

Publication type:

Article

Prediction of active sites for protein structures from computed chemical properties.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i258

By:

Jaeju Ko;
Leonel F. Murga;
Ying Wei;
Mary Jo Ondrechen

Publication type:

Article

Automated interpretation of MS/MS spectra of oligosaccharides.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i431, doi. 10.1093/bioinformatics/bti1038

By:

Haixu Tang;
Yehia Mechref;
Milos V. Novotny

Publication type:

Article

Reversal distance for partially ordered genomes.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i502

By:

David Sankoff

Publication type:

Article

Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i232, doi. 10.1093/bioinformatics/bti1036

By:

Henrik Jönsson;
Marcus Heisler;
G. Venugopala Reddy

Publication type:

Article

Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i378, doi. 10.1093/bioinformatics/bti1035

By:

Tali Sadka;
Michal Linial

Publication type:

Article

CaSPredictor: a new computer-based tool for caspase substrate prediction.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i169, doi. 10.1093/bioinformatics/bti1034

By:

H. M. Garay-Malpartida;
J. M. Occhiucci

Publication type:

Article

Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i413, doi. 10.1093/bioinformatics/bti1033

By:

Yun S. Song

Publication type:

Article

Detecting coevolving amino acid sites using Bayesian mutational mapping.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i126, doi. 10.1093/bioinformatics/bti1032

By:

Matthew W. Dimmic;
Melissa J. Hubisz;
Carlos D. Bustamante;
Rasmus Nielsen

Publication type:

Article

Experimental design for three-color and four-color gene expression microarrays.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i459, doi. 10.1093/bioinformatics/bti1031

By:

Yong Woo;
Winfried Krueger;
Anupinder Kaur;
Gary Churchill

Publication type:

Article

Bayesian neural network approaches to ovarian cancer identification from high-resolution mass spectrometry data.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i487

By:

Jiangsheng Yu;
Xue-Wen Chen

Publication type:

Article

Improving protein structure prediction with model-based search.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i66

By:

Oliver Brock

Publication type:

Article

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i440, doi. 10.1093/bioinformatics/bti1028

By:

Kannan Tharakaraman;
Leonardo Mariño-Ramírez

Publication type:

Article

Maximum likelihood of evolutionary trees: hardness and approximation.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i97

By:

Tamir Tuller

Publication type:

Article

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i85, doi. 10.1093/bioinformatics/bti1026

By:

Kei-Hoi Cheung;
Kevin Y. Yip;
Andrew Smith;
Remko deKnikker;
Andy Masiar;
Mark Gerstein

Publication type:

Article

Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i283, doi. 10.1093/bioinformatics/bti1025

By:

Shaun Mahony;
Aaron Golden;
Terry J. Smith;
Panayiotis V. Benos

Publication type:

Article

Classifying noisy protein sequence data: a case study of immunoglobulin light chains.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i495

By:

Chenggang Yu;
Nela Zavaljevski;
Fred J. Stevens;
Kelly Yackovich;
Jaques Reifman

Publication type:

Article

In silico identification of functional regions in proteins.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i328, doi. 10.1093/bioinformatics/bti1023

By:

Guy Nimrod;
Fabian Glaser;
David Steinberg;
Nir Ben-Tal;
Tal Pupko

Publication type:

Article

Clustering short time series gene expression data.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i159, doi. 10.1093/bioinformatics/bti1022

By:

Jason Ernst;
Gerard J. Nau;
Ziv Bar-Joseph

Publication type:

Article

Tag SNP selection in genotype data for maximizing SNP prediction accuracy.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i195, doi. 10.1093/bioinformatics/bti1021

By:

Eran Halperin;
Gad Kimmel

Publication type:

Article

Robust classification modeling on microarray data using misclassification penalized posterior.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i423, doi. 10.1093/bioinformatics/bti1020

By:

Mat Soukup;
HyungJun Cho;
Jae K. Lee

Publication type:

Article

A procedure for assessing GO annotation consistency.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i136, doi. 10.1093/bioinformatics/bti1019

By:

Mary E. Dolan;
Li Ni;
Evelyn Camon;
Judith A. Blake

Publication type:

Article

De novo identification of repeat families in large genomes.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i351

By:

Pavel A. Pevzner

Publication type:

Article

A path planning approach for computing large-amplitude motions of flexible molecules.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i116, doi. 10.1093/bioinformatics/bti1017

By:

J. Cortés;
T. Siméon;
V. Ruiz de Angulo;
D. Guieysse;
M. Remaud-Siméon;
V. Tran

Publication type:

Article

Kernel methods for predicting protein–protein interactions.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i38, doi. 10.1093/bioinformatics/bti1016

By:

Asa Ben-Hur;
William Stafford Noble

Publication type:

Article

Data integration and visualization system for enabling conceptual biology.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i177

By:

Peddinti V. Gopalacharyulu;
Erno Lindfors;
Catherine Bounsaythip;
Teemu Kivioja;
Laxman Yetukuri;
Jaakko Hollmén;
Matej Orešič

Publication type:

Article

An HMM posterior decoder for sequence feature prediction that includes homology information.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i251, doi. 10.1093/bioinformatics/bti1014

By:

Lukas Käll;
Anders Krogh;
Erik L. L. Sonnhammer

Publication type:

Article

A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i29

By:

Tim Beißbarth;
Jason A. Tye-Din;
Gordon K. Smyth;
Terence P. Speed;
Robert P. Anderson

Publication type:

Article

Supervised enzyme network inference from the integration of genomic data and chemical information.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i468, doi. 10.1093/bioinformatics/bti1012

By:

Yoshihiro Yamanishi;
Jean-Philippe Vert;
Minoru Kanehisa

Publication type:

Article

Beyond the clause: extraction of phosphorylation information from medline abstracts.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i319, doi. 10.1093/bioinformatics/bti1011

By:

M. Narayanaswamy;
K. E. Ravikumar;
K. Vijay-Shanker

Publication type:

Article

ANOSVA: a statistical method for detecting splice variation from expression data.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i107, doi. 10.1093/bioinformatics/bti1010

By:

Melissa S. Cline;
John Blume;
Simon Cawley;
Tyson A. Clark;
Jing-Shan Hu;
Gang Lu;
Nathan Salomonis;
Hui Wang;
Alan Williams

Publication type:

Article

Predicting protein–protein interaction by searching evolutionary tree automorphism space.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i241

By:

Teresa M. Przytycka

Publication type:

Article