Works matching IS 13674803 AND DT 2004 AND VI 20 AND IP 18

Results: 65

A metric model of amino acid substitution.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3716

By:

Xu, Weijia;
Miranke, Daniel P.

Publication type:

Article

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3628, doi. 10.1093/bioinformatics/bth460

By:

Samuelsson, Jim;
Dalevi, Daniel;
Levander, Fredrik;
Rögnvaldsson, Thorsteinn

Publication type:

Article

GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3710, doi. 10.1093/bioinformatics/bth456

By:

Boyle, Elizabeth I.;
Weng, Shuai;
Gollub, Jeremy;
Jin, Heng;
Botstein, David;
Cherry, J. Michael;
Sherlock, Gavin

Publication type:

Article

Highly specific prediction of phosphorylation sites in proteins.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3620, doi. 10.1093/bioinformatics/bth455

By:

Koenig, Matthias;
Grabe, Niels

Publication type:

Article

Training HMM structure with genetic algorithm for biological sequence analysis.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3613, doi. 10.1093/bioinformatics/bth454

By:

Won, Kyoung-Jae;
Prügel-Bennett, Adam;
Krogh, Anders

Publication type:

Article

Discovering patterns to extract protein–protein interactions from full texts.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3604, doi. 10.1093/bioinformatics/bth451

By:

Huang, Minlie;
Zhu, Xiaoyan;
Hao, Yu;
Payan, Donald G.;
Qu, Kunbin;
Li, Ming

Publication type:

Article

NMRb: a web-site repository for raw NMR datasets.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3707, doi. 10.1093/bioinformatics/bth450

By:

Pons, J. L.;
Malliavin, T. E.;
Tramesel, D.;
Delsuc, M. A.

Publication type:

Article

limmaGUI: A graphical user interface for linear modeling of microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3705, doi. 10.1093/bioinformatics/bth449

By:

Wettenhall, James M.;
Smyth, Gordon K.

Publication type:

Article

Advances to Bayesian network inference for generating causal networks from observational biological data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3594

By:

Yu, Jing;
Smith, V. Anne;
Wang, Paul P.;
Hartemink, Alexander J.;
Jarvis, Erich D.

Publication type:

Article

BagBoosting for tumor classification with gene expression data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3583, doi. 10.1093/bioinformatics/bth447

By:

Dettling, Marcel

Publication type:

Article

Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3575, doi. 10.1093/bioinformatics/bth446

By:

Anderle, Markus;
Roy, Sushmita;
Lin, Hua;
Becker, Christopher;
Joho, Keith

Publication type:

Article

Discovery of meaningful associations in genomic data using partial correlation coefficients.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3565, doi. 10.1093/bioinformatics/bth445

By:

de la Fuente, Alberto;
Bing, Nan;
Hoeschele, Ina;
Mendes, Pedro

Publication type:

Article

CLANS: a Java application for visualizing protein families based on pairwise similarity.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3702, doi. 10.1093/bioinformatics/bth444

By:

Frickey, Tancred;
Lupas, Andrei

Publication type:

Article

The Baumgartner-Weiß-Schindler test for the detection of differentially expressed genes in replicated microarray experiments.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3553, doi. 10.1093/bioinformatics/bth442

By:

Neuhäuser, Markus;
Senske, Roswitha

Publication type:

Article

The ‘subsequent artificial neural network’ (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3544, doi. 10.1093/bioinformatics/bth441

By:

Linder, Roland;
Dew, Dawn;
Sudhoff, Holger;
Theegarten, Dirk;
Remberger, Klaus;
Pöppl, Siegfried J.;
Wagner, Mathias

Publication type:

Article

Accurate detection of aneuploidies in array CGH and gene expression microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3533, doi. 10.1093/bioinformatics/bth440

By:

Myers, Chad L.;
Dunham, Maitreya J.;
Kung, S. Y.;
Troyanskaya, Olga G.

Publication type:

Article

Primer Design and Marker Clustering for Multiplex SNP-IT Primer Extension Genotyping Assay using Statistical Modeling.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3526, doi. 10.1093/bioinformatics/bth439

By:

Yuryev, Anton;
Huang, Jianping;
Scott, Kathryn E.;
Kuebler, Jennifer;
Donaldson, Miriam;
Phillips, Michael S.;
Pohl, Mark;
Boyce-Jacino, Michael T.

Publication type:

Article

Comparative analysis of methods for representing and searching for transcription factor binding sites.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3516, doi. 10.1093/bioinformatics/bth438

By:

Osada, Robert;
Zaslavsky, Elena;
Singh, Mona

Publication type:

Article

Modeling interactome: scale-free or geometric?

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3508, doi. 10.1093/bioinformatics/bth436

By:

Pržulj, N.;
Corneil, D. G.;
Jurisica, I.

Publication type:

Article

Exploring protein fold space by secondary structure prediction using data distribution method on Grid platform.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3500, doi. 10.1093/bioinformatics/bth435

By:

Lee, Soojin;
Cho, Min-Kyu;
Jung, Jin-Won;
Kim, Jai-Hoon;
Lee, Weontae

Publication type:

Article

Predicting GPCR–G-protein coupling using hidden Markov models.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3490, doi. 10.1093/bioinformatics/bth434

By:

Sreekumar, Kodangattil R.;
Huang, Youping;
Pausch, Mark H.;
Gulukota, Kamalakar

Publication type:

Article

Ontologies for Behavior.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3700, doi. 10.1093/bioinformatics/bth433

By:

Midford, Peter E.

Publication type:

Article

DIVAA: analysis of amino acid diversity in multiple aligned protein sequences.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3481, doi. 10.1093/bioinformatics/bth432

By:

Rodi, Diane J.;
Mandava, Suneeta;
Makowski, Lee

Publication type:

Article

PCOAT: positional correlation analysis using multiple methods.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3697

By:

Qi, Yuan;
Grishin, Nick V.

Publication type:

Article

Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3466, doi. 10.1093/bioinformatics/bth430

By:

Siew, Joyce Phui Yee;
Khan, Asif M.;
Tan, Paul T. J.;
Koh, Judice L. Y.;
Seah, Seng Hong;
Koo, Chuay Yeng;
Chai, Siaw Ching;
Armugam, Arunmozhiarasi;
Brusic, Vladimir;
Jeyaseelan, Kandiah

Publication type:

Article

ViTO: tool for refinement of protein sequence–structure alignments.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3694, doi. 10.1093/bioinformatics/bth429

By:

Catherinot, Vincent;
Labesse, Gilles

Publication type:

Article

GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3691

By:

Wu, Chia-Chin;
Huang, Hsuan-Cheng;
Juan, Hsueh-Fen;
Chen, Shui-Tein

Publication type:

Article

ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3462, doi. 10.1093/bioinformatics/bth427

By:

Rosenfeld, Jeffrey A.;
Sarkar, Indra N.;
Planet, Paul J.;
Figurski, David H.;
DeSalle, Rob

Publication type:

Article

A probabilistic measure for alignment-free sequence comparison.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3455, doi. 10.1093/bioinformatics/bth426

By:

Pham, Tuan D.;
Zuegg, Johannes

Publication type:

Article

Data exploration tools for the Gene Ontology database.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3442, doi. 10.1093/bioinformatics/bth425

By:

Shoop, Elizabeth;
Casaes, Paulo;
Onsongo, Getiria;
Lesnett, Lisa;
Petursdottir, Erla Osk;
Donkor, Edward Kofi Yeboah;
Tkach, Dennis;
Cosimini, Michael

Publication type:

Article

Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3687, doi. 10.1093/bioinformatics/bth424

By:

Knowlton, Nicholas;
Dozmorov, Igor M.;
Centola, Michael

Publication type:

Article

CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3682, doi. 10.1093/bioinformatics/bth423

By:

Hallin, Peter F.;
Ussery, David W.

Publication type:

Article

The JigCell Model Builder and Run Manager.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3680, doi. 10.1093/bioinformatics/bth422

By:

Vass, Marc;
Allen, Nicholas;
Shaffer, Clifford A.;
Ramakrishnan, Naren;
Watson, Layne T.;
Tyson, John J.

Publication type:

Article

Limited agreement among three global gene expression methods highlights the requirement for non-global validation.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3431, doi. 10.1093/bioinformatics/bth421

By:

Haverty, Peter M.;
Hsiao, Li-Li;
Gullans, Steven R.;
Hansen, Ulla;
Weng, Zhiping

Publication type:

Article

DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3676, doi. 10.1093/bioinformatics/bth420

By:

Gisel, Andreas;
Panetta, Maria;
Grillo, Giorgio;
Licciulli, Vito Flavio;
Liuni, Sabino;
Saccone, Cecilia;
Pesole, Graziano

Publication type:

Article

Gene selection using a two-level hierarchical Bayesian model.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3423, doi. 10.1093/bioinformatics/bth419

By:

Bae, Kyounghwa;
Mallick, Bani K.

Publication type:

Article

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3413, doi. 10.1093/bioinformatics/bth418

By:

Hupé, Philippe;
Stransky, Nicolas;
Thiery, Jean-Paul;
Radvanyi, François;
Barillot, Emmanuel

Publication type:

Article

SelSim: a program to simulate population genetic data with natural selection and recombination.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3673, doi. 10.1093/bioinformatics/bth417

By:

Spencer, Chris C. A.;
Coop, Graham

Publication type:

Article

GenePicker: replicate analysis of Affymetrix gene expression microarrays.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3670, doi. 10.1093/bioinformatics/bth416

By:

Finocchiaro, Giacomo;
Parise, Paola;
Minardi, Simone P.;
Alcalay, Myriam;
Müller, Heiko

Publication type:

Article

Dimension reduction methods for microarrays with application to censored survival data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3406

By:

Li, Lexin;
Li, Hongzhe

Publication type:

Article

Mining HIV protease cleavage data using genetic programming with a sum-product function.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3398, doi. 10.1093/bioinformatics/bth414

By:

Yang, Zheng Rong;
Dalby, Andrew R.;
Qiu, Jing

Publication type:

Article

EC_oligos: automated and whole-genome primer design for exons within one or between two genomes.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3668

By:

Liu, Shaolin;
Tinker, Nicholas A.;
Molnar, Stephen J.;
Mather, Diane E.

Publication type:

Article

An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3387, doi. 10.1093/bioinformatics/bth412

By:

Selivanov, Vitaly A.;
Puigjaner, Joaquim;
Sillero, Antonio;
Centelles, Josep J.;
Ramos-Montoya, Antonio;
Lee, Paul W.-N.;
Cascante, Marta

Publication type:

Article

CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3665

By:

Hitte, Christophe;
Derrien, Thomas;
André, Catherine;
Ostrander, Elaine A.;
Galibert, Francis

Publication type:

Article

A software program combining sequence motif searches with keywords for finding repeats containing DNA sequences.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3379, doi. 10.1093/bioinformatics/bth410

By:

Bilgen, Mehmet;
Karaca, Mehmet;
Onus, A. Naci;
Ince, Ayşe Gül

Publication type:

Article

Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3370, doi. 10.1093/bioinformatics/bth409

By:

McDonald, Daniel M.;
Chen, Hsinchun;
Su, Hua;
Marshall, Byron B.

Publication type:

Article

Reducing storage requirements for biological sequence comparison.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3363, doi. 10.1093/bioinformatics/bth408

By:

Roberts, Michael;
Hayes, Wayne;
Hunt, Brian R.;
Mount, Stephen M.;
Yorke, James A.

Publication type:

Article

Preferred in vivo ubiquitination sites.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3302, doi. 10.1093/bioinformatics/bth407

By:

Catic, André;
Collins, Cal;
Church, George M.;
Ploegh, Hidde L.

Publication type:

Article

Interactive gene-order comparison for multiple small genomes.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3662, doi. 10.1093/bioinformatics/bth406

By:

Kaluszka, Aaron;
Gibas, Cynthia

Publication type:

Article

A graph-theoretic approach to testing associations between disparate sources of functional genomics data.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3353, doi. 10.1093/bioinformatics/bth405

By:

Balasubramanian, Raji;
LaFramboise, Thomas;
Scholtens, Denise;
Gentleman, Robert

Publication type:

Article