Works matching IS 13674803 AND DT 2004 AND VI 20 AND IP 17

Results: 53

A model-based optimization framework for the inference on gene regulatory networks from DNA array data.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3221, doi. 10.1093/bioinformatics/bth389

By:

Reuben Thomas;
Sanjay Mehrotra;
Eleftherios T. Papoutsakis;
Vassily Hatzimanikatis

Publication type:

Article

Computational prediction of RNA editing sites.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3214, doi. 10.1093/bioinformatics/bth387

By:

R. Bundschuh

Publication type:

Article

BioRAT: extracting biological information from full-length papers.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3206, doi. 10.1093/bioinformatics/bth386

By:

David P. A. Corney;
Bernard F. Buxton;
William B. Langdon;
David T. Jones

Publication type:

Article

Letter to the Editor.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2903, doi. 10.1093/bioinformatics/bth385

By:

Lisa M. Schilling

Publication type:

Article

Normalization of microarray data using a spatial mixed model analysis which includes splines.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3196, doi. 10.1093/bioinformatics/bth384

By:

David Baird;
Peter Johnstone;
Theresa Wilson

Publication type:

Article

Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3185, doi. 10.1093/bioinformatics/bth383

By:

Nathalie Pochet;
Frank De Smet;
Johan A. K. Suykens;
Bart L. R. De Moor

Publication type:

Article

Prediction of phosphorylation sites using SVMs.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3179, doi. 10.1093/bioinformatics/bth382

By:

Jong Hun Kim;
Juyoung Lee;
Bermseok Oh;
Kuchan Kimm;
InSong Koh

Publication type:

Article

Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3166, doi. 10.1093/bioinformatics/bth381

By:

J. Wang;
K. R. Coombes;
W. E. Highsmith;
M. J. Keating;
L. V. Abruzzo

Publication type:

Article

The UniMarker (UM) method for synteny mapping of large genomes.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3156, doi. 10.1093/bioinformatics/bth380

By:

Ben-Yang Liao;
Yu-Jung Chang

Publication type:

Article

A statistical method for identifying differential gene–gene co-expression patterns.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3146, doi. 10.1093/bioinformatics/bth379

By:

Yinglei Lai;
Baolin Wu;
Liang Chen;
Hongyu Zhao

Publication type:

Article

BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3289, doi. 10.1093/bioinformatics/bth378

By:

Michael L. Blinov;
James R. Faeder;
Byron Goldstein;
William S. Hlavacek

Publication type:

Article

Phan3D: design of biological phantoms in 3D electron microscopy.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3286, doi. 10.1093/bioinformatics/bth377

By:

J. R. Bilbao-Castro;
C. O. S. Sorzano;
I. García;
J. J. Fernández

Publication type:

Article

A web portal for classification of expression data using maximal margin linear programming.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3284, doi. 10.1093/bioinformatics/bth376

By:

Alexey V. Antonov;
Igor V. Tetko;
Volodymyr V. Prokopenko;
Denis Kosykh;
Hans W. Mewes

Publication type:

Article

HumanMSD and MouseMSD: generating genetic maps for human and murine microsatellite markers.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3280, doi. 10.1093/bioinformatics/bth375

By:

M. Bahlo;
L. Xing;
C. R. Wilkinson

Publication type:

Article

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2911, doi. 10.1093/bioinformatics/bth374

By:

Eric Bonnet;
Jan Wuyts;
Pierre Rouzé;
Yves Van de Peer

Publication type:

Article

Constrained clusters of gene expression profiles with pathological features.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3137, doi. 10.1093/bioinformatics/bth373

By:

Jun Sese;
Yukinori Kurokawa;
Morito Monden;
Kikuya Kato;
Shinichi Morishita

Publication type:

Article

PTGL—a web-based database application for protein topologies.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3277, doi. 10.1093/bioinformatics/bth367

By:

Patrick May;
Stefan Barthel;
Ina Koch

Publication type:

Article

Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3108, doi. 10.1093/bioinformatics/bth371

By:

A. Hsiao;
D. S. Worrall;
J. M. Olefsky;
S. Subramaniam

Publication type:

Article

Comparison of probabilistic combination methods for protein secondary structure prediction.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3099, doi. 10.1093/bioinformatics/bth370

By:

Yan Liu;
Jaime Carbonell;
Judith Klein-Seetharaman;
Vanathi Gopalakrishnan

Publication type:

Article

Developing optimal non-linear scoring function for protein design.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3080

By:

Changyu Hu;
Xiang Li;
Jie Liang

Publication type:

Article

A comparative method for identification of gene structures and alternatively spliced variants.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3064, doi. 10.1093/bioinformatics/bth368

By:

Trees-Juen Chuang;
Feng-Chi Chen;
Meng-Yuan Chou

Publication type:

Article

Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3128, doi. 10.1093/bioinformatics/bth372

By:

Glen A. Satten;
Somnath Datta;
Hercules Moura;
Adrian R. Woolfitt;
Maria da G. Carvalho;
George M. Carlone;
Barun K. De;
Antonis Pavlopoulos;
John R. Barr

Publication type:

Article

POINT: a database for the prediction of protein–protein interactions based on the orthologous interactome.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3273, doi. 10.1093/bioinformatics/bth366

By:

Tao-Wei Huang;
An-Chi Tien

Publication type:

Article

Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3055, doi. 10.1093/bioinformatics/bth364

By:

Pål Sætrom

Publication type:

Article

BioSilico: an integrated metabolic database system.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3270, doi. 10.1093/bioinformatics/bth363

By:

Bo Kyeng Hou;
Jin Sik Kim

Publication type:

Article

The CRASSS plug-in for integrating annotation data with hierarchical clustering results.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3266, doi. 10.1093/bioinformatics/bth362

By:

Eugen C. Buehler;
Jeffrey R. Sachs

Publication type:

Article

Taverna: a tool for the composition and enactment of bioinformatics workflows.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3045, doi. 10.1093/bioinformatics/bth361

By:

Tom Oinn;
Matthew Addis;
Justin Ferris;
Darren Marvin;
Martin Senger;
Mark Greenwood;
Tim Carver;
Kevin Glover;
Matthew R. Pocock;
Anil Wipat;
Peter Li

Publication type:

Article

SNPicker: a graphical tool for primer picking in designing mutagenic endonuclease restriction assays.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3263, doi. 10.1093/bioinformatics/bth360

By:

Tianhua Niu;
Zhenjun Hu

Publication type:

Article

QuickJoin—fast neighbour-joining tree reconstruction.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3261, doi. 10.1093/bioinformatics/bth359

By:

Thomas Mailund;
Christian N. S. Pedersen

Publication type:

Article

TMRPres2D: high quality visual representation of transmembrane protein models.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3258

By:

Ioannis C. Spyropoulos;
Theodore D. Liakopoulos;
Pantelis G. Bagos;
Stavros J. Hamodrakas

Publication type:

Article

Sample classification from protein mass spectrometry, by ‘peak probability contrasts’.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3034, doi. 10.1093/bioinformatics/bth357

By:

Robert Tibshirani;
Trevor Hastie;
Balasubramanian Narasimhan;
Scott Soltys;
Gongyi Shi;
Albert Koong;
Quynh-Thu Le

Publication type:

Article

CTRD: a fast applet for computing signed translocation distance between genomes.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3256, doi. 10.1093/bioinformatics/bth356

By:

WangSen Feng;
Lusheng Wang;
Daming Zhu

Publication type:

Article

Biologically valid linear factor models of gene expression.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3021, doi. 10.1093/bioinformatics/bth354

By:

Mark Girolami;
Rainer Breitling

Publication type:

Article

Automatic annotation of organellar genomes with DOGMA.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3252, doi. 10.1093/bioinformatics/bth352

By:

Stacia K. Wyman;
Robert K. Jansen;
Jeffrey L. Boore

Publication type:

Article

Protein complex prediction via cost-based clustering.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3013, doi. 10.1093/bioinformatics/bth351

By:

A. D. King;
N. Pržulj;
I. Jurisica

Publication type:

Article

An entity tagger for recognizing acquired genomic variations in cancer literature.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3249, doi. 10.1093/bioinformatics/bth350

By:

Ryan T. McDonald;
R. Scott Winters

Publication type:

Article

Java Treeview—extensible visualization of microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3246, doi. 10.1093/bioinformatics/bth349

By:

Alok J. Saldanha

Publication type:

Article

lga972: a cross-platform application for optimizing LD studies using a genetic algorithm.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3244, doi. 10.1093/bioinformatics/bth348

By:

Jaime R. Robles;
Edwin J. C. G. van den Oord

Publication type:

Article

Picky: oligo microarray design for large genomes.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2893, doi. 10.1093/bioinformatics/bth347

By:

Hui-Hsien Chou;
An-Ping Hsia;
Denise L. Mooney;
Patrick S. Schnable

Publication type:

Article

Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3005, doi. 10.1093/bioinformatics/bth346

By:

Jörn Lewin;
Armin O. Schmitt;
Péter Adorján;
Thomas Hildmann;
Christian Piepenbrock

Publication type:

Article

Visualizations for taxonomic and phylogenetic trees.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2997, doi. 10.1093/bioinformatics/bth345

By:

Cynthia Sims Parr;
Bongshin Lee;
Dana Campbell;
Benjamin B. Bederson

Publication type:

Article

Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2904, doi. 10.1093/bioinformatics/bth344

By:

Neeraj Pandey;
Mythily Ganapathi

Publication type:

Article

Supervised machine learning techniques for the classification of metabolic disorders in newborns.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2985, doi. 10.1093/bioinformatics/bth343

By:

C. Baumgartner;
C. Böhm;
D. Baumgartner;
G. Marini;
K. Weinberger;
B. Olgemöller;
B. Liebl;
A. A. Roscher

Publication type:

Article

EST clustering error evaluation and correction.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2973, doi. 10.1093/bioinformatics/bth342

By:

Ji-Ping Z. Wang;
Bruce G. Lindsay;
James Leebens-Mack;
Liying Cui;
Kerr Wall;
Webb C. Miller;
Claude W. dePamphilis

Publication type:

Article

GOLDsurfer: three dimensional display of linkage disequilibrium.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 3241, doi. 10.1093/bioinformatics/bth341

By:

Fredrik Pettersson;
Oskar Jonsson;
Lon R. Cardon

Publication type:

Article

Transmembrane proteins in the Protein Data Bank: identification and classification.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2964, doi. 10.1093/bioinformatics/bth340

By:

Gábor E. Tusnády;
Zsuzsanna Dosztányi;
István Simon

Publication type:

Article

A spline function approach for detecting differentially expressed genes in microarray data analysis.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2954

By:

Wenqing He

Publication type:

Article

Bayesian integrated functional analysis of microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2943

By:

Madhuchhanda Bhattacharjee;
Colin C. Pritchard;
Peter S. Nelson;
Elja Arjas

Publication type:

Article

Reconstruction of gene networks using Bayesian learning and manipulation experiments.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2934, doi. 10.1093/bioinformatics/bth337

By:

Iosifina Pournara;
Lorenz Wernisch

Publication type:

Article

Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2928, doi. 10.1093/bioinformatics/bth334

By:

Sven Rahmann;
Christine Gräfe

Publication type:

Article