Works matching IS 13674803 AND DT 2004 AND VI 20 AND IP 16

Results: 61

Data mining techniques to study the disulfide-bonding state in proteins: signal peptide is a strong descriptor.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2509, doi. 10.1093/bioinformatics/bth332

By:

Dominique Tessier;
Benjamin Bardiaux;
Colette Larré;
Yves Popineau

Publication type:

Article

A statistical framework for the design of microarray experiments and effective detection of differential gene expression.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2821, doi. 10.1093/bioinformatics/bth336

By:

Shu-Dong Zhang;
Timothy W. Gant

Publication type:

Article

STAR: an algorithm to Search for Tandem Approximate Repeats.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2812, doi. 10.1093/bioinformatics/bth335

By:

Olivier Delgrange;
Eric Rivals

Publication type:

Article

Regulatory motif finding by logic regression.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2799, doi. 10.1093/bioinformatics/bth333

By:

Sündüz Keleş;
Mark J. van der Laan;
Chris Vulpe

Publication type:

Article

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2792, doi. 10.1093/bioinformatics/bth331

By:

M. Pérez-Enciso;
I. Misztal

Publication type:

Article

BacTregulators: a database of transcriptional regulators in bacteria and archaea.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2787, doi. 10.1093/bioinformatics/bth330

By:

Manuel Martínez-Bueno;
Antonio J. Molina-Henares

Publication type:

Article

Command line tool for calculating theoretical MS spectra for given sequences.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2889, doi. 10.1093/bioinformatics/bth328

By:

Andreas M. Boehm;
Florian Grosse-Coosmann;
Albert Sickmann

Publication type:

Article

Faster cyclic loess: normalizing RNA arrays via linear models.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2778, doi. 10.1093/bioinformatics/bth327

By:

Karla V. Ballman;
Diane E. Grill;
Ann L. Oberg;
Terry M. Therneau

Publication type:

Article

ICBS: a database of interactions between protein chains mediated by β-sheet formation.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2767, doi. 10.1093/bioinformatics/bth326

By:

Yimeng Dou;
Pierre-François Baisnée

Publication type:

Article

CoPS: Comprehensive Peptide Signature Database.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2886, doi. 10.1093/bioinformatics/bth325

By:

Tulika Prakash;
Mamta Khandelwal;
Dipayan Dasgupta;
Debasis Dash;
Samir K. Brahmachari

Publication type:

Article

Mining gene expression data based on template theory.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2759, doi. 10.1093/bioinformatics/bth323

By:

Zheng Rong Yang

Publication type:

Article

A neural network method for prediction of β-turn types in proteins using evolutionary information.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2751, doi. 10.1093/bioinformatics/bth322

By:

Harpreet Kaur;
G. P. S. Raghava

Publication type:

Article

GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2883, doi. 10.1093/bioinformatics/bth321

By:

P. D'Addabbo;
L. Lenzi;
F. Facchin;
R. Casadei;
S. Canaider;
L. Vitale;
F. Frabetti;
P. Carinci;
M. Zannotti;
P. Strippoli

Publication type:

Article

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2738, doi. 10.1093/bioinformatics/bth320

By:

Yonatan H. Grad;
Frederick P. Roth;
Marc S. Halfon;
George M. Church

Publication type:

Article

The Global Error Assessment (GEA) model for the selection of differentially expressed genes in microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2726, doi. 10.1093/bioinformatics/bth319

By:

Robert Mansourian;
David M. Mutch

Publication type:

Article

Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2719, doi. 10.1093/bioinformatics/bth317

By:

Nicolas Omont;
François Képès

Publication type:

Article

FigSearch: a figure legend indexing and classification system.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2880, doi. 10.1093/bioinformatics/bth316

By:

Fang Liu;
Tor-Kristian Jenssen;
Vegard Nygaard;
John Sack;
Eivind Hovig

Publication type:

Article

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2878, doi. 10.1093/bioinformatics/bth315

By:

W. H. Majoros;
M. Pertea;
S. L. Salzberg

Publication type:

Article

Thermodynamics of enzyme-catalyzed reactions—a database for quantitative biochemistry.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2874, doi. 10.1093/bioinformatics/bth314

By:

Robert N. Goldberg;
Yadu B. Tewari;
Talapady N. Bhat

Publication type:

Article

Rainbow: a toolbox for phylogenetic supertree construction and analysis.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2872, doi. 10.1093/bioinformatics/bth313

By:

D. Chen;
O. Eulenstein;
D. Fernández-Baca

Publication type:

Article

Mining gene expression data for positive and negative co-regulated gene clusters.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2711

By:

Liping Ji;
Kian-Lee Tan

Publication type:

Article

Exhaustive whole-genome tandem repeats search.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2702, doi. 10.1093/bioinformatics/bth311

By:

Arun Krishnan;
Francis Tang

Publication type:

Article

A mixture model for estimating the local false discovery rate in DNA microarray analysis.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2694, doi. 10.1093/bioinformatics/bth310

By:

J.G. Liao;
Yong Lin;
Zachariah E. Selvanayagam;
Weichung Joe Shih

Publication type:

Article

Correcting log ratios for signal saturation in cDNA microarrays.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2685, doi. 10.1093/bioinformatics/bth309

By:

Lori E. Dodd;
Edward L. Korn;
Lisa M. McShane;
G.V.R. Chandramouli;
Eric Y. Chuang

Publication type:

Article

An efficient algorithm for optimizing whole genome alignment with noise.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2676, doi. 10.1093/bioinformatics/bth308

By:

Prudence W. H. Wong;
T. W. Lam;
N. Lu;
H. F. Ting;
S. M. Yiu

Publication type:

Article

ClutrFree: cluster tree visualization and interpretation.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2869, doi. 10.1093/bioinformatics/bth307

By:

Ghislain Bidaut;
Michael F. Ochs

Publication type:

Article

DBRF–MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2662, doi. 10.1093/bioinformatics/bth306

By:

Koji Kyoda;
Kotaro Baba;
Shuichi Onami;
Hiroaki Kitano

Publication type:

Article

SCA db: spinocerebellar ataxia candidate gene database.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2656, doi. 10.1093/bioinformatics/bth305

By:

Y.-F. Liu;
U.-C. Yang

Publication type:

Article

SWAPSC: sliding window analysis procedure to detect selective constraints.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2867, doi. 10.1093/bioinformatics/bth303

By:

Mario A. Fares

Publication type:

Article

Lucy2: an interactive DNA sequence quality trimming and vector removal tool.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2865

By:

Song Li;
Hui-Hsien Chou

Publication type:

Article

Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2863, doi. 10.1093/bioinformatics/bth301

By:

W. H. Lee;
V. B. Vega

Publication type:

Article

TargetDB: a target registration database for structural genomics projects.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2860, doi. 10.1093/bioinformatics/bth300

By:

Li Chen;
Rose Oughtred;
Helen M. Berman;
John Westbrook

Publication type:

Article

A collaborative database of inbred mouse strain characteristics.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2857, doi. 10.1093/bioinformatics/bth299

By:

Stephen C. Grubb;
Gary A. Churchill;
Molly A. Bogue

Publication type:

Article

Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2644, doi. 10.1093/bioinformatics/bth298

By:

Harm van Bakel;
Martijn Huynen;
Cisca Wijmenga

Publication type:

Article

Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2504, doi. 10.1093/bioinformatics/bth297

By:

Akira R. Kinjo;
Ken Nishikawa

Publication type:

Article

ASIAN: a website for network inference.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2853, doi. 10.1093/bioinformatics/bth296

By:

Sachiyo Aburatani;
Kousuke Goto;
Shigeru Saito;
Masaki Fumoto;
Akira Imaizumi;
Nobuyoshi Sugaya;
Hiroo Murakami;
Makihiko Sato;
Hiroyuki Toh;
Katsuhisa Horimoto

Publication type:

Article

THEA: ontology-driven analysis of microarray data.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2636, doi. 10.1093/bioinformatics/bth295

By:

C. Pasquier;
F. Girardot;
K. Jevardat de Fombelle;
R. Christen

Publication type:

Article

A statistical framework for genomic data fusion.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2626, doi. 10.1093/bioinformatics/bth294

By:

Gert R. G. Lanckriet;
Tijl De Bie;
Nello Cristianini;
Michael I. Jordan;
William Stafford Noble

Publication type:

Article

GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2618, doi. 10.1093/bioinformatics/bth293

By:

Marcel Smid;
Lambert C. J. Dorssers

Publication type:

Article

A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2605, doi. 10.1093/bioinformatics/bth292

By:

Feng Luo;
Latifur Khan;
Farokh Bastani;
I-Ling Yen;
Jizhong Zhou

Publication type:

Article

Distribution of information in biomedical abstracts and full-text publications.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2597, doi. 10.1093/bioinformatics/bth291

By:

M. J. Schuemie;
M. Weeber;
B. J. A. Schijvenaars;
E. M. van Mulligen;
C. C. van der Eijk;
R. Jelier;
B. Mons;
J. A. Kors

Publication type:

Article

Incremental generation of summarized clustering hierarchy for protein family analysis.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2586, doi. 10.1093/bioinformatics/bth290

By:

Chien-Yu Chen;
Yen-Jen Oyang;
Hsueh-Fen Juan

Publication type:

Article

Gene-Ontology-based clustering of gene expression data.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2851, doi. 10.1093/bioinformatics/bth289

By:

Boris Adryan;
Reinhard Schuh

Publication type:

Article

Genome wide identification and classification of alternative splicing based on EST data.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2579, doi. 10.1093/bioinformatics/bth288

By:

S. Gupta;
D. Zink;
B. Korn;
M. Vingron;
S. A. Haas

Publication type:

Article

RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2848, doi. 10.1093/bioinformatics/bth287

By:

F. Lazzarato;
G. Franceschinis;
M. Botta;
F. Cordero;
R. A. Calogero

Publication type:

Article

Predicting allergenic proteins using wavelet transform.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2572

By:

Kuo-Bin Li;
Praveen Issac;
Arun Krishnan

Publication type:

Article

A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2562, doi. 10.1093/bioinformatics/bth285

By:

Philippe Broët;
Alex Lewin;
Sylvia Richardson;
Cyril Dalmasso;
Henri Magdelenat

Publication type:

Article

The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2845, doi. 10.1093/bioinformatics/bth284

By:

Sandra Barth;
Markus Fischer;
Rolf D. Schmid;
Jürgen Pleiss

Publication type:

Article

Analyzing time series gene expression data.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2493, doi. 10.1093/bioinformatics/bth283

By:

Ziv Bar-Joseph

Publication type:

Article

Identification of DNA regulatory motifs using Bayesian variable selection.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2553, doi. 10.1093/bioinformatics/bth282

By:

Mahlet G. Tadesse;
Marina Vannucci;
Pietro Liò

Publication type:

Article