Works matching IS 13674803 AND DT 2001 AND VI 17

Results: 242

CONSEL: for assessing the confidence of phylogenetic tree selection.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1246, doi. 10.1093/bioinformatics/17.12.1246

By:

Shimodaira, Hidetoshi;
Hasegawa, Masami

Publication type:

Article

MEGA2: molecular evolutionary genetics analysis software.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1244, doi. 10.1093/bioinformatics/17.12.1244

By:

Kumar, Sudhir;
Tamura, Koichiro;
Jakobsen, Ingrid B.;
Nei, Masatoshi

Publication type:

Article

EVA: continuous automatic evaluation of protein structure prediction servers.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1242, doi. 10.1093/bioinformatics/17.12.1242

By:

Eyrich, Volker A.;
Martı´-Renom, Marc A.;
Przybylski, Dariusz;
Madhusudhan, Mallur S.;
Fiser, Andra´s;
Pazos, Florencio;
Valencia, Alfonso;
Sali, Andrej;
Rost, Burkhard

Publication type:

Article

ToolShop: prerelease inspections for protein structure prediction servers.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1240, doi. 10.1093/bioinformatics/17.12.1240

By:

Rychlewski, Leszek

Publication type:

Article

TMCompare: transmembrane region sequence and structure.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1238, doi. 10.1093/bioinformatics/17.12.1238

By:

Togawa, R. C.;
Antoniw, J. F.;
Mullins, J. G. L.

Publication type:

Article

ProPred: prediction of HLA-DR binding sites.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1236, doi. 10.1093/bioinformatics/17.12.1236

By:

Singh, Harpreet;
Raghava, G. P. S.

Publication type:

Article

mmsearch: a motif arrangement language and search program.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1234, doi. 10.1093/bioinformatics/17.12.1234

By:

Junier, Thomas;
Pagni, Marco;
Bucher, Philipp

Publication type:

Article

Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1232, doi. 10.1093/bioinformatics/17.12.1232

By:

Zhang, Theresa;
Zhang, Michael

Publication type:

Article

Sequence type analysis and recombinational tests (START).

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1230, doi. 10.1093/bioinformatics/17.12.1230

By:

Jolley, K. A.;
Feil, E. J.;
Chan, M.-S.;
Maiden, M. C. J.

Publication type:

Article

Progenetix.net: an online repository for molecular cytogenetic aberration data.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1228, doi. 10.1093/bioinformatics/17.12.1228

By:

Baudis, Michael;
Cleary, Michael L.

Publication type:

Article

MELTING, computing the melting temperature of nucleic acid duplex.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1226

By:

Le Nove`re, Nicolas

Publication type:

Article

Evolution of amino acid biosynthesis and enzymes with broad substrate specificity.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1224, doi. 10.1093/bioinformatics/17.12.1224

By:

Nishida, Hiromi

Publication type:

Article

A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1213, doi. 10.1093/bioinformatics/17.12.1213

By:

Boland, Michael V.;
Murphy, Robert F.

Publication type:

Article

SPiD: a subtilis protein interaction database.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1209, doi. 10.1093/bioinformatics/17.12.1209

By:

Hoebeke, Mark;
Chiapello, He´le`ne;
Noirot, Philippe;
Bessie`res, Philippe

Publication type:

Article

Visualizing plant metabolomic correlation networks using clique–metabolite matrices.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1198, doi. 10.1093/bioinformatics/17.12.1198

By:

Kose, Frank;
Weckwerth, Wolfram;
Linke, Thomas;
Fiehn, Oliver

Publication type:

Article

How to reconstruct a large genetic network from n gene perturbations in fewer than n2 easy steps.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1183, doi. 10.1093/bioinformatics/17.12.1183

By:

Wagner, Andreas

Publication type:

Article

Taxonomy workbench.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1179, doi. 10.1093/bioinformatics/17.12.1179

By:

Wildpaner, Michael;
Schneider, Georg;
Schleiffer, Alexander;
Eisenhaber, Frank

Publication type:

Article

Minimum conflict: a divide-and-conquer approach to phylogeny estimation.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1168, doi. 10.1093/bioinformatics/17.12.1168

By:

Fuellen, Georg;
Wa¨gele, Johann-Wolfgang;
Giegerich, Robert

Publication type:

Article

Estimation of P-values for global alignments of protein sequences.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1158, doi. 10.1093/bioinformatics/17.12.1158

By:

Webber, Caleb;
Barton, Geoffrey J.

Publication type:

Article

Differential expression of genes coding for ribosomal proteins in different human tissues.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1152, doi. 10.1093/bioinformatics/17.12.1152

By:

Bortoluzzi, S.;
d’Alessi, F.;
Romualdi, C.;
Danieli, G. A.

Publication type:

Article

Statistical estimation of cluster boundaries in gene expression profile data.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1143, doi. 10.1093/bioinformatics/17.12.1143

By:

Horimoto, Katsuhisa;
Toh, Hiroyuki

Publication type:

Article

Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1131

By:

Li, Leping;
Weinberg, Clarice R.;
Darden, Thomas A.;
Pedersen, Lee G.

Publication type:

Article

A probabilistic method for identifying start codons in bacterial genomes.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1123, doi. 10.1093/bioinformatics/17.12.1123

By:

Suzek, Baris E.;
Ermolaeva, Maria D.;
Schreiber, Mark;
Salzberg, Steven L.

Publication type:

Article

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1113, doi. 10.1093/bioinformatics/17.12.1113

By:

Thijs, Gert;
Lescot, Magali;
Marchal, Kathleen;
Rombauts, Stephane;
De Moor, Bart;
Rouze´, Pierre;
Moreau, Yves

Publication type:

Article

Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1105, doi. 10.1093/bioinformatics/17.12.1105

By:

Ray, William C.;
Munson Jr, Robert S.;
Daniels, Charles J.

Publication type:

Article

DNA sequence quality trimming and vector removal.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1093, doi. 10.1093/bioinformatics/17.12.1093

By:

Chou, Hui-Hsien;
Holmes, Michael H.

Publication type:

Article

Towards Computer Aided Design (CAD) of Useful Microorganisms.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1091, doi. 10.1093/bioinformatics/17.12.1091

By:

Tomita, Masaru

Publication type:

Article

Automatic analysis of agarose gel images.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1084, doi. 10.1093/bioinformatics/17.11.1084

By:

Umesh Adiga, P. S.;
Bhomra, A.;
Turri, M. G.;
Nicod, A.;
Datta, S. R.;
Jeavons, P.;
Mott, R.;
Flint, J.

Publication type:

Article

Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1077, doi. 10.1093/bioinformatics/17.11.1077

By:

Chan, Man-Suen;
Maiden, Martin C. J.;
Spratt, Brian G.

Publication type:

Article

Selection of optimal DNA oligos for gene expression arrays.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1067

By:

Li, Fugen;
Stormo, Gary D.

Publication type:

Article

Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1065, doi. 10.1093/bioinformatics/17.11.1065

By:

Ramensky, Vasily E.;
Makeev, Vsevolod Ju.;
Roytberg, Mikhail A.;
Tumanyan, Vladimir G.

Publication type:

Article

Nucleosome formation potential of exons, introns, and Alu repeats.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1062, doi. 10.1093/bioinformatics/17.11.1062

By:

Levitsky, Victor G.;
Podkolodnaya, Olga A.;
Kolchanov, Nikolay A.;
Podkolodny, Nikolay L.

Publication type:

Article

Concepts to automate the theoretical design of effective antisense oligonucleotides.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1058, doi. 10.1093/bioinformatics/17.11.1058

By:

Kretschmer-Kazemi Far, Rosel;
Nedbal, Wolfgang;
Sczakiel, Georg

Publication type:

Article

The TRANSPATH signal transduction database: a knowledge base on signal transduction networks.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1053, doi. 10.1093/bioinformatics/17.11.1053

By:

Schacherer, Frank;
Choi, Claudia;
Go¨tze, Ulrike;
Krull, Mathias;
Pistor, Susanne;
Wingender, Edgar

Publication type:

Article

MDB: a database system utilizing automatic construction of modules and STAR-derived universal language.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1047, doi. 10.1093/bioinformatics/17.11.1047

By:

Migliavacca, Eugenia;
Adzhubei, Alexei A.;
Peitsch, Manuel C.

Publication type:

Article

Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1035, doi. 10.1093/bioinformatics/17.11.1035

By:

Afonnikov, D. A.;
Oshchepkov, D. Yu.;
Kolchanov, N. A.

Publication type:

Article

Thermodynamic database for protein–nucleic acid interactions (ProNIT).

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1027, doi. 10.1093/bioinformatics/17.11.1027

By:

Prabakaran, Ponraj;
An, Jianghong;
Gromiha, M. Michael;
Selvaraj, Samuel;
Uedaira, Hatsuho;
Kono, Hidetoshi;
Sarai, Akinori

Publication type:

Article

Combining frequency and positional information to predict transcription factor binding sites.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1019, doi. 10.1093/bioinformatics/17.11.1019

By:

Kiełbasa, Szymon M.;
Beule, Dieter;
Schuchhardt, Johannes;
Herzel, Hanspeter

Publication type:

Article

Gene recognition in eukaryotic DNA by comparison of genomic sequences.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 1011, doi. 10.1093/bioinformatics/17.11.1011

By:

Novichkov, P. S.;
Gelfand, M. S.;
Mironov, A. A.

Publication type:

Article

Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 998, doi. 10.1093/bioinformatics/17.11.998

By:

Levitsky, Victor G.;
Podkolodnaya, Olga A.;
Kolchanov, Nikolay A.;
Podkolodny, Nikolay L.

Publication type:

Article

The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000.

Published in:

Bioinformatics, 2001, v. 17, n. 11, p. 997, doi. 10.1093/bioinformatics/17.11.997

By:

Kolchanov, Nikolay;
Hodgman, Charlie

Publication type:

Article

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 988, doi. 10.1093/bioinformatics/17.10.988

By:

Rzhetsky, Andrey;
Gomez, Shawn M.

Publication type:

Article

Model-based clustering and data transformations for gene expression data.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 977, doi. 10.1093/bioinformatics/17.10.977

By:

Yeung, K. Y.;
Fraley, C.;
Murua, A.;
Raftery, A. E.;
Ruzzo, W. L.

Publication type:

Article

Sequence and structural aspects of functional diversification in class I α-mannosidase evolution.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 965, doi. 10.1093/bioinformatics/17.10.965

By:

Jordan, I. King;
Bishop, G. Reid;
Gonzalez, Daniel S.

Publication type:

Article

Prediction of disulfide connectivity in proteins.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 957, doi. 10.1093/bioinformatics/17.10.957

By:

Fariselli, Piero;
Casadio, Rita

Publication type:

Article

Determining the minimum number of types necessary to represent the sizes of protein atoms.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 949, doi. 10.1093/bioinformatics/17.10.949

By:

Tsai, Jerry;
Voss, Neil;
Gerstein, Mark

Publication type:

Article

Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 942, doi. 10.1093/bioinformatics/17.10.942

By:

Mallios, R. R.

Publication type:

Article

Clustering protein sequences—structure prediction by transitive homology.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 935, doi. 10.1093/bioinformatics/17.10.935

By:

Bolten, Eva;
Schliep, Alexander;
Schneckener, Sebastian;
Schomburg, Dietmar;
Schrader, Rainer

Publication type:

Article

Markovian domain fingerprinting: statistical segmentation of protein sequences.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 927, doi. 10.1093/bioinformatics/17.10.927

By:

Bejerano, Gill;
Seldin, Yevgeny;
Margalit, Hanah;
Tishby, Naftali

Publication type:

Article

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.

Published in:

Bioinformatics, 2001, v. 17, n. 10, p. 920, doi. 10.1093/bioinformatics/17.10.920

By:

Kretschmann, Ernst;
Fleischmann, Wolfgang;
Apweiler, Rolf

Publication type:

Article