Found: 62
Select item for more details and to access through your institution.
Bioframe: operations on genomic intervals in Pandas dataframes.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae088
- By:
- Publication type:
- Article
PanEffect: a pan-genome visualization tool for variant effects in maize.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae073
- By:
- Publication type:
- Article
Interpreting protein abundance in Saccharomyces cerevisiae through relational learning.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae050
- By:
- Publication type:
- Article
DESpace: spatially variable gene detection via differential expression testing of spatial clusters.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae027
- By:
- Publication type:
- Article
Zero is not absence: censoring-based differential abundance analysis for microbiome data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae071
- By:
- Publication type:
- Article
VariantDetective: an accurate all-in-one pipeline for detecting consensus bacterial SNPs and SVs.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae066
- By:
- Publication type:
- Article
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae028
- By:
- Publication type:
- Article
PERFUMES: pipeline to extract RNA functional motifs and exposed structures.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae056
- By:
- Publication type:
- Article
Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae029
- By:
- Publication type:
- Article
Dynamic correlations: exact and approximate methods for mutual information.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae076
- By:
- Publication type:
- Article
RNA threading with secondary structure and sequence profile.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae080
- By:
- Publication type:
- Article
Many-core algorithms for high-dimensional gradients on phylogenetic trees.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae030
- By:
- Publication type:
- Article
BCFtools/liftover: an accurate and comprehensive tool to convert genetic variants across genome assemblies.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae038
- By:
- Publication type:
- Article
T-S2Inet: Transformer-based sequence-to-image network for accurate nanopore sequence recognition.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae083
- By:
- Publication type:
- Article
Estimation of inbreeding and kinship coefficients via latent identity-by-descent states.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae082
- By:
- Publication type:
- Article
Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae070
- By:
- Publication type:
- Article
DIRECTEUR: transcriptome-based prediction of small molecules that replace transcription factors for direct cell conversion.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae048
- By:
- Publication type:
- Article
PMIpred: a physics-informed web server for quantitative protein–membrane interaction prediction.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae069
- By:
- Publication type:
- Article
HiPhase: jointly phasing small, structural, and tandem repeat variants from HiFi sequencing.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae042
- By:
- Publication type:
- Article
scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae008
- By:
- Publication type:
- Article
BINGO: a blind unmixing algorithm for ultra-multiplexing fluorescence images.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae052
- By:
- Publication type:
- Article
Protein language models meet reduced amino acid alphabets.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae061
- By:
- Publication type:
- Article
GeneGPT: augmenting large language models with domain tools for improved access to biomedical information.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae075
- By:
- Publication type:
- Article
TKSM: highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae051
- By:
- Publication type:
- Article
YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae047
- By:
- Publication type:
- Article
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae010
- By:
- Publication type:
- Article
Pitfalls of machine learning models for protein–protein interaction networks.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae012
- By:
- Publication type:
- Article
The predictive capacity of polygenic risk scores for disease risk is only moderately influenced by imputation panels tailored to the target population.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae036
- By:
- Publication type:
- Article
vcfpp: a C++ API for rapid processing of the variant call format.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae049
- By:
- Publication type:
- Article
SL-Miner: a web server for mining evidence and prioritization of cancer-specific synthetic lethality.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae016
- By:
- Publication type:
- Article
Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae022
- By:
- Publication type:
- Article
Highly efficient clustering of long-read transcriptomic data with GeLuster.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae059
- By:
- Publication type:
- Article
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae072
- By:
- Publication type:
- Article
Phenotype prediction from single-cell RNA-seq data using attention-based neural networks.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae067
- By:
- Publication type:
- Article
cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btad781
- By:
- Publication type:
- Article
GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae034
- By:
- Publication type:
- Article
3D Optical Coherence Tomography image processing in BISCAP: characterization of biofilm structure and properties.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae041
- By:
- Publication type:
- Article
A simple refined DNA minimizer operator enables 2-fold faster computation.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae045
- By:
- Publication type:
- Article
PipeVal: light-weight extensible tool for file validation.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae079
- By:
- Publication type:
- Article
NFTest: automated testing of Nextflow pipelines.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae081
- By:
- Publication type:
- Article
PERSEUS: an interactive and intuitive web-based tool for pedigree visualization.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae060
- By:
- Publication type:
- Article
pycofitness—Evaluating the fitness landscape of RNA and protein sequences.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae074
- By:
- Publication type:
- Article
PractiCPP: a deep learning approach tailored for extremely imbalanced datasets in cell-penetrating peptide prediction.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae058
- By:
- Publication type:
- Article
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae078
- By:
- Publication type:
- Article
Expanding the coverage of spatial proteomics: a machine learning approach.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae062
- By:
- Publication type:
- Article
StructuralDPPIV: a novel deep learning model based on atom structure for predicting dipeptidyl peptidase-IV inhibitory peptides.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae057
- By:
- Publication type:
- Article
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae065
- By:
- Publication type:
- Article
CTISL: a dynamic stacking multi-class classification approach for identifying cell types from single-cell RNA-seq data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae063
- By:
- Publication type:
- Article
Statistical framework to determine indel-length distribution.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae043
- By:
- Publication type:
- Article
Deep centroid: a general deep cascade classifier for biomedical omics data classification.
- Published in:
- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae039
- By:
- Publication type:
- Article