Found: 50
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DREAM: an R package for druggability evaluation of human complex diseases.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad442
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- Article
ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0—an improved Bayesian-based method for the annotation of LC–MS/MS untargeted metabolomics data.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad455
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- Article
AGHmatrix: genetic relationship matrices in R.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad445
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- Article
RDBridge: a knowledge graph of rare diseases based on large-scale text mining.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad440
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- Publication type:
- Article
cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad439
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- Article
SBOannotator: a Python tool for the automated assignment of systems biology ontology terms.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad437
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- Publication type:
- Article
Cytocipher determines significantly different populations of cells in single-cell RNA-seq data.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad435
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- Article
CNAsim: improved simulation of single-cell copy number profiles and DNA-seq data from tumors.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad434
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- Article
Testing phylogenetic signal with categorical traits and tree uncertainty.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad433
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- Article
MOViDA: multiomics visible drug activity prediction with a biologically informed neural network model.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad432
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- Article
Unravelling spatial gene associations with SEAGAL: a Python package for spatial transcriptomics data analysis and visualization.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad431
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- Publication type:
- Article
LPF: a framework for exploring the wing color pattern formation of ladybird beetles in Python.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad430
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- Publication type:
- Article
Building protein structure-specific rotamer libraries.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad429
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- Publication type:
- Article
Feature weighted models to address lineage dependency in drug-resistance prediction from Mycobacterium tuberculosis genome sequences.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad428
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- Publication type:
- Article
MDSubSampler: a posteriori sampling of important protein conformations from biomolecular simulations.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad427
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- Publication type:
- Article
A novel approach to T-cell receptor beta chain (TCRB) repertoire encoding using lossless string compression.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad426
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- Publication type:
- Article
Tau-typing: a Nextflow pipeline for finding the best phylogenetic markers in the genome for molecular typing of microbial species.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad425
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- Publication type:
- Article
Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad424
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- Publication type:
- Article
MEDIPIPE: an automated and comprehensive pipeline for cfMeDIP-seq data quality control and analysis.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad423
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- Publication type:
- Article
Chromothripsis detection with multiple myeloma patients based on deep graph learning.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad422
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- Publication type:
- Article
RNAenrich: a web server for non-coding RNA enrichment.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad421
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- Publication type:
- Article
CCIBP: a comprehensive cosmetic ingredients bioinformatics platform.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad416
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- Article
Counting pseudoalignments to novel splicing events.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad419
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- Article
KG-Hub—building and exchanging biological knowledge graphs.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad418
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- Publication type:
- Article
Information-incorporated sparse convex clustering for disease subtyping.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad417
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- Publication type:
- Article
LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad420
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- Publication type:
- Article
PyWGCNA: a Python package for weighted gene co-expression network analysis.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad415
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- Publication type:
- Article
Robust joint clustering of multi-omics single-cell data via multi-modal high-order neighborhood Laplacian matrix optimization.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad414
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- Publication type:
- Article
Inference of microbial covariation networks using copula models with mixture margins.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad413
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- Publication type:
- Article
MDTips: a multimodal-data-based drug–target interaction prediction system fusing knowledge, gene expression profile, and structural data.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad411
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- Publication type:
- Article
Retraction of: DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 functional and endogenous on-target editing efficiency.
- Published in:
- 2023
- Publication type:
- Correction Notice
Hierarchical graph transformer with contrastive learning for protein function prediction.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad410
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- Article
Plassembler: an automated bacterial plasmid assembly tool.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad409
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- Publication type:
- Article
CodingDiv: analyzing SNP-level microdiversity to discriminate between coding and noncoding regions in viral genomes.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad408
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- Publication type:
- Article
Generating interacting protein sequences using domain-to-domain translation.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad401
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- Publication type:
- Article
TopNEXt: automatic DDA exclusion framework for multi-sample mass spectrometry experiments.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad406
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- Publication type:
- Article
Accelerating open modification spectral library searching on tensor core in high-dimensional space.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad404
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- Publication type:
- Article
ISRES+: an improved evolutionary strategy for function minimization to estimate the free parameters of systems biology models.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad403
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- Publication type:
- Article
LEGO-CSM: a tool for functional characterization of proteins.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad402
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- Publication type:
- Article
enviRule: an end-to-end system for automatic extraction of reaction patterns from environmental contaminant biotransformation pathways.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad407
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- Publication type:
- Article
Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad400
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- Publication type:
- Article
S-leaping: an efficient downsampling method for large high-throughput sequencing data.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad399
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- Publication type:
- Article
JTK: targeted diploid genome assembler.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad398
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- Publication type:
- Article
COVRECON: automated integration of genome- and metabolome-scale network reconstruction and data-driven inverse modeling of metabolic interaction networks.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad397
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- Publication type:
- Article
Genetic fine-mapping from summary data using a nonlocal prior improves the detection of multiple causal variants.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad396
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- Publication type:
- Article
MEvA-X: a hybrid multiobjective evolutionary tool using an XGBoost classifier for biomarkers discovery on biomedical datasets.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad384
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- Publication type:
- Article
BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad393
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- Publication type:
- Article
Retraction of: Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad394
- Publication type:
- Article
Modelling capture efficiency of single-cell RNA-sequencing data improves inference of transcriptome-wide burst kinetics.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad395
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- Publication type:
- Article
Understanding the complementarity and plasticity of antibody–antigen interfaces.
- Published in:
- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad392
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- Publication type:
- Article