Found: 1005
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MAGScoT: a fast, lightweight and accurate bin-refinement tool.
- Published in:
- Bioinformatics, 2022, v. 38, n. 24, p. 5430, doi. 10.1093/bioinformatics/btac694
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- Article
DeepPerVar: a multi-modal deep learning framework for functional interpretation of genetic variants in personal genome.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5340, doi. 10.1093/bioinformatics/btac696
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- Article
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5168, doi. 10.1093/bioinformatics/btac678
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- Article
Improving and evaluating deep learning models of cellular organization.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5299, doi. 10.1093/bioinformatics/btac688
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- Article
ATLIGATOR: editing protein interactions with an atlas-based approach.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5199, doi. 10.1093/bioinformatics/btac685
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- Article
Neuron tracing from light microscopy images: automation, deep learning and bench testing.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5329, doi. 10.1093/bioinformatics/btac712
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- Article
Integrating transformer and imbalanced multi-label learning to identify antimicrobial peptides and their functional activities.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5368, doi. 10.1093/bioinformatics/btac711
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- Article
EvAM-Tools: tools for evolutionary accumulation and cancer progression models.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5457, doi. 10.1093/bioinformatics/btac710
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- Article
ConsensuSV—from the whole-genome sequencing data to the complete variant list.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5440, doi. 10.1093/bioinformatics/btac709
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- Article
HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5360, doi. 10.1093/bioinformatics/btac708
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- Article
Identifying the critical state of complex biological systems by the directed-network rank score method.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5398, doi. 10.1093/bioinformatics/btac707
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- Article
ADViSELipidomics: a workflow for analyzing lipidomics data.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5460, doi. 10.1093/bioinformatics/btac706
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- Article
3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5454, doi. 10.1093/bioinformatics/btac705
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- Article
GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5413, doi. 10.1093/bioinformatics/btac704
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- Article
EcoTransLearn: an R-package to easily use transfer learning for ecological studies—a plankton case study.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5469, doi. 10.1093/bioinformatics/btac703
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- Article
HAT: haplotype assembly tool using short and error-prone long reads.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5352, doi. 10.1093/bioinformatics/btac702
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- Article
AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5452, doi. 10.1093/bioinformatics/btac701
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- Publication type:
- Article
Convex hull as diagnostic tool in single-molecule localization microscopy.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5421, doi. 10.1093/bioinformatics/btac700
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- Article
LCD-Composer webserver: high-specificity identification and functional analysis of low-complexity domains in proteins.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5446, doi. 10.1093/bioinformatics/btac699
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- Article
OmicsEV: a tool for comprehensive quality evaluation of omics data tables.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5463, doi. 10.1093/bioinformatics/btac698
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- Article
CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5437, doi. 10.1093/bioinformatics/btac697
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- Article
SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5434, doi. 10.1093/bioinformatics/btac695
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- Article
Defining the extent of gene function using ROC curvature.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5390, doi. 10.1093/bioinformatics/btac692
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- Article
novel pipeline for computerized mouse spermatogenesis staging.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5307, doi. 10.1093/bioinformatics/btac677
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- Article
Prediction of drug-likeness using graph convolutional attention network.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5262, doi. 10.1093/bioinformatics/btac676
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- Article
BraneMF: integration of biological networks for functional analysis of proteins.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5383, doi. 10.1093/bioinformatics/btac691
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- Article
kmdiff, large-scale and user-friendly differential k-mer analyses.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5443, doi. 10.1093/bioinformatics/btac689
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- Article
in silico genome-wide screen for circadian clock strength in human samples.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5375, doi. 10.1093/bioinformatics/btac686
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- Article
LaGAT: link-aware graph attention network for drug–drug interaction prediction.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5406, doi. 10.1093/bioinformatics/btac682
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- Publication type:
- Article
DREAMM: a web-based server for drugging protein-membrane interfaces as a novel workflow for targeted drug design.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5449, doi. 10.1093/bioinformatics/btac680
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- Article
Common data model for COVID-19 datasets.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5466, doi. 10.1093/bioinformatics/btac651
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- Article
Powerful and interpretable control of false discoveries in two-group differential expression studies.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5214, doi. 10.1093/bioinformatics/btac693
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- Article
CoxMKF: a knockoff filter for high-dimensional mediation analysis with a survival outcome in epigenetic studies.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5229, doi. 10.1093/bioinformatics/btac687
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- Article
Biomedical evidence engineering for data-driven discovery.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5270, doi. 10.1093/bioinformatics/btac675
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- Article
penalized linear mixed model with generalized method of moments estimators for complex phenotype prediction.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5222, doi. 10.1093/bioinformatics/btac659
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- Publication type:
- Article
scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5322, doi. 10.1093/bioinformatics/btac684
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- Publication type:
- Article
AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5236, doi. 10.1093/bioinformatics/btac683
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- Article
Evaluation of efficiency prediction algorithms and development of ensemble model for CRISPR/Cas9 gRNA selection.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5175, doi. 10.1093/bioinformatics/btac681
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- Article
Estimation of speciation times under the multispecies coalescent.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5182, doi. 10.1093/bioinformatics/btac679
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- Article
CAMML with the Integration of Marker Proteins (ChIMP).
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- Bioinformatics, 2022, v. 38, n. 23, p. 5206, doi. 10.1093/bioinformatics/btac674
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- Article
GTDB-Tk v2: memory friendly classification with the genome taxonomy database.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5315, doi. 10.1093/bioinformatics/btac672
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- Publication type:
- Article
MSNet-4mC: learning effective multi-scale representations for identifying DNA N4-methylcytosine sites.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5160, doi. 10.1093/bioinformatics/btac671
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- Publication type:
- Article
scHiCPTR: unsupervised pseudotime inference through dual graph refinement for single-cell Hi-C data.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5151, doi. 10.1093/bioinformatics/btac670
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- Publication type:
- Article
CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5245, doi. 10.1093/bioinformatics/btac668
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- Publication type:
- Article
SATINN: an automated neural network-based classification of testicular sections allows for high-throughput histopathology of mouse mutants.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5288, doi. 10.1093/bioinformatics/btac673
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- Article
MDSCAN: RMSD-based HDBSCAN clustering of long molecular dynamics.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5191, doi. 10.1093/bioinformatics/btac666
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- Article
Correction to: plotsr: visualizing structural similarities and rearrangements between multiple genomes.
- Published in:
- 2022
- Publication type:
- Correction Notice
Learning temporal difference embeddings for biomedical hypothesis generation.
- Published in:
- Bioinformatics, 2022, v. 38, n. 23, p. 5253, doi. 10.1093/bioinformatics/btac660
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- Publication type:
- Article
Tree2GD: a phylogenomic method to detect large-scale gene duplication events.
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- Bioinformatics, 2022, v. 38, n. 23, p. 5317, doi. 10.1093/bioinformatics/btac669
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- Article
RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data.
- Published in:
- Bioinformatics, 2022, v. 38, n. 22, p. 5131, doi. 10.1093/bioinformatics/btac665
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- Article