Found: 41
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DeePaC: predicting pathogenic potential of novel DNA with reverse-complement neural networks.
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- Bioinformatics, 2020, v. 36, n. 1, p. 81, doi. 10.1093/bioinformatics/btz541
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Cooler: scalable storage for Hi-C data and other genomically labeled arrays.
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- Bioinformatics, 2020, v. 36, n. 1, p. 311, doi. 10.1093/bioinformatics/btz540
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Towards accurate high-throughput ligand affinity prediction by exploiting structural ensembles, docking metrics and ligand similarity.
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- Bioinformatics, 2020, v. 36, n. 1, p. 160, doi. 10.1093/bioinformatics/btz538
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circDeep: deep learning approach for circular RNA classification from other long non-coding RNA.
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- Bioinformatics, 2020, v. 36, n. 1, p. 73, doi. 10.1093/bioinformatics/btz537
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Isoform function prediction based on bi-random walks on a heterogeneous network.
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- Bioinformatics, 2020, v. 36, n. 1, p. 303, doi. 10.1093/bioinformatics/btz535
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QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction.
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- Bioinformatics, 2020, v. 36, n. 1, p. 90, doi. 10.1093/bioinformatics/btz552
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Simultaneous prediction of multiple outcomes using revised stacking algorithms.
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- Bioinformatics, 2020, v. 36, n. 1, p. 65, doi. 10.1093/bioinformatics/btz531
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- Article
MiTPeptideDB: a proteogenomic resource for the discovery of novel peptides.
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- Bioinformatics, 2020, v. 36, n. 1, p. 205, doi. 10.1093/bioinformatics/btz530
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A helical lock and key model of polyproline II conformation with SH3.
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- Bioinformatics, 2020, v. 36, n. 1, p. 154, doi. 10.1093/bioinformatics/btz527
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Inference of differential gene regulatory networks based on gene expression and genetic perturbation data.
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- Bioinformatics, 2020, v. 36, n. 1, p. 197, doi. 10.1093/bioinformatics/btz529
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HUNER: improving biomedical NER with pretraining.
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- Bioinformatics, 2020, v. 36, n. 1, p. 295, doi. 10.1093/bioinformatics/btz528
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MaNGA: a novel multi-niche multi-objective genetic algorithm for QSAR modelling.
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- Bioinformatics, 2020, v. 36, n. 1, p. 145, doi. 10.1093/bioinformatics/btz521
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Bayesian GWAS with Structured and Non-Local Priors.
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- Bioinformatics, 2020, v. 36, n. 1, p. 17, doi. 10.1093/bioinformatics/btz518
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Increasing the efficiency and accuracy of the ABACUS protein sequence design method.
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- Bioinformatics, 2020, v. 36, n. 1, p. 136, doi. 10.1093/bioinformatics/btz515
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- Article
Genetic cooperativity in multi-layer networks implicates cell survival and senescence in the striatum of Huntington's disease mice synchronous to symptoms.
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- Bioinformatics, 2020, v. 36, n. 1, p. 186, doi. 10.1093/bioinformatics/btz514
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Modelling cancer progression using Mutual Hazard Networks.
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- Bioinformatics, 2020, v. 36, n. 1, p. 241, doi. 10.1093/bioinformatics/btz513
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DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks.
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- Bioinformatics, 2020, v. 36, n. 1, p. 56, doi. 10.1093/bioinformatics/btz512
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sefOri: selecting the best-engineered sequence features to predict DNA replication origins.
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- Bioinformatics, 2020, v. 36, n. 1, p. 49, doi. 10.1093/bioinformatics/btz506
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Deep representation learning for domain adaptable classification of infrared spectral imaging data.
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- Bioinformatics, 2020, v. 36, n. 1, p. 287, doi. 10.1093/bioinformatics/btz505
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Towards reliable named entity recognition in the biomedical domain.
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- Bioinformatics, 2020, v. 36, n. 1, p. 280, doi. 10.1093/bioinformatics/btz504
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- Article
MRLR: unraveling high-resolution meiotic recombination by linked reads.
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- Bioinformatics, 2020, v. 36, n. 1, p. 10, doi. 10.1093/bioinformatics/btz503
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iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.
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- Bioinformatics, 2020, v. 36, n. 1, p. 131, doi. 10.1093/bioinformatics/btz502
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Reversible jump MCMC for multi-model inference in Metabolic Flux Analysis.
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- Bioinformatics, 2020, v. 36, n. 1, p. 232, doi. 10.1093/bioinformatics/btz500
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Estimation of population genetic parameters using an EM algorithm and sequence data from experimental evolution populations.
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- Bioinformatics, 2020, v. 36, n. 1, p. 221, doi. 10.1093/bioinformatics/btz498
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Positive multistate protein design.
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- Bioinformatics, 2020, v. 36, n. 1, p. 122, doi. 10.1093/bioinformatics/btz497
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iScore: a novel graph kernel-based function for scoring protein–protein docking models.
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- Bioinformatics, 2020, v. 36, n. 1, p. 112, doi. 10.1093/bioinformatics/btz496
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Deep learning on chaos game representation for proteins.
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- Bioinformatics, 2020, v. 36, n. 1, p. 272, doi. 10.1093/bioinformatics/btz493
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CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision.
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- Bioinformatics, 2020, v. 36, n. 1, p. 264, doi. 10.1093/bioinformatics/btz490
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A sequential algorithm to detect diffusion switching along intracellular particle trajectories.
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- Bioinformatics, 2020, v. 36, n. 1, p. 317, doi. 10.1093/bioinformatics/btz489
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GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis.
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- Bioinformatics, 2020, v. 36, n. 1, p. 257, doi. 10.1093/bioinformatics/btz488
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- Article
Sequence alignment using machine learning for accurate template-based protein structure prediction.
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- Bioinformatics, 2020, v. 36, n. 1, p. 104, doi. 10.1093/bioinformatics/btz483
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P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking.
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- Bioinformatics, 2020, v. 36, n. 1, p. 96, doi. 10.1093/bioinformatics/btz478
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Protein contact prediction using metagenome sequence data and residual neural networks.
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- Bioinformatics, 2020, v. 36, n. 1, p. 41, doi. 10.1093/bioinformatics/btz477
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Mycorrhiza: genotype assignment using phylogenetic networks.
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- Bioinformatics, 2020, v. 36, n. 1, p. 212, doi. 10.1093/bioinformatics/btz476
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- Article
Adaptive boosting-based computational model for predicting potential miRNA-disease associations.
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- Bioinformatics, 2020, v. 36, n. 1, p. 330, doi. 10.1093/bioinformatics/btz475
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- Article
arcasHLA: high-resolution HLA typing from RNAseq.
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- Bioinformatics, 2020, v. 36, n. 1, p. 33, doi. 10.1093/bioinformatics/btz474
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DepthFinder: a tool to determine the optimal read depth for reduced-representation sequencing.
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- Bioinformatics, 2020, v. 36, n. 1, p. 26, doi. 10.1093/bioinformatics/btz473
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Cloud bursting galaxy: federated identity and access management.
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- Bioinformatics, 2020, v. 36, n. 1, p. 1, doi. 10.1093/bioinformatics/btz472
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An empirical Bayesian ranking method, with applications to high throughput biology.
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- Bioinformatics, 2020, v. 36, n. 1, p. 177, doi. 10.1093/bioinformatics/btz471
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Scaling tree-based automated machine learning to biomedical big data with a feature set selector.
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- Bioinformatics, 2020, v. 36, n. 1, p. 250, doi. 10.1093/bioinformatics/btz470
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A dynamic programing approach to integrate gene expression data and network information for pathway model generation.
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- Bioinformatics, 2020, v. 36, n. 1, p. 169, doi. 10.1093/bioinformatics/btz467
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- Article