Found: 71
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A multivariate regression approach to association analysis of a quantitative trait network.
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- Bioinformatics, 2009, v. 25, n. 12, p. i204, doi. 10.1093/bioinformatics/btp218
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- Article
Viruses selectively mutate their CD8 T-cell epitopes--a large-scale immunomic analysis.
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- Bioinformatics, 2009, v. 25, n. 12, p. i39, doi. 10.1093/bioinformatics/btp221
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A geometric approach for classification and comparison of structural variants.
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- Bioinformatics, 2009, v. 25, n. 12, p. i222, doi. 10.1093/bioinformatics/btp208
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A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery.
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- Bioinformatics, 2009, v. 25, n. 12, p. i305, doi. 10.1093/bioinformatics/btp220
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Genotype-phenotype associations: substitution models to detect evolutionary associations between phenotypic variables and genotypic evolutionary rate.
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- Bioinformatics, 2009, v. 25, n. 12, p. i94, doi. 10.1093/bioinformatics/btp231
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MapView: visualization of short reads alignment on a desktop computer.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1554, doi. 10.1093/bioinformatics/btp255
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Multi-locus match probability in a finite population: a fundamental difference between the Moran and Wright-Fisher models.
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- Bioinformatics, 2009, v. 25, n. 12, p. i187, doi. 10.1093/bioinformatics/btp227
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Predicting and understanding the stability of G-quadruplexes.
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- Bioinformatics, 2009, v. 25, n. 12, p. i374, doi. 10.1093/bioinformatics/btp210
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Efficient exact motif discovery.
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- Bioinformatics, 2009, v. 25, n. 12, p. i356, doi. 10.1093/bioinformatics/btp188
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Toward a gold standard for promoter prediction evaluation.
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- Bioinformatics, 2009, v. 25, n. 12, p. i313, doi. 10.1093/bioinformatics/btp191
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Inference of locus-specific ancestry in closely related populations.
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- Bioinformatics, 2009, v. 25, n. 12, p. i213, doi. 10.1093/bioinformatics/btp197
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Author Index.
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- Bioinformatics, 2009, v. 25, n. 12, p. i383, doi. 10.1093/bioinformatics/btp315
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- Article
DISCOVER: a feature-based discriminative method for motif search in complex genomes.
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- Bioinformatics, 2009, v. 25, n. 12, p. i321, doi. 10.1093/bioinformatics/btp230
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Assessing phylogenetic motif models for predicting transcription factor binding sites.
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- Bioinformatics, 2009, v. 25, n. 12, p. i339, doi. 10.1093/bioinformatics/btp201
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Predictions of RNA secondary structure by combining homologous sequence information.
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- Bioinformatics, 2009, v. 25, n. 12, p. i330, doi. 10.1093/bioinformatics/btp228
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Family classification without domain chaining.
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- Bioinformatics, 2009, v. 25, n. 12, p. i45, doi. 10.1093/bioinformatics/btp207
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A partition function algorithm for interacting nucleic acid strands.
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- Bioinformatics, 2009, v. 25, n. 12, p. i365, doi. 10.1093/bioinformatics/btp212
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REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform.
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- Bioinformatics, 2009, v. 25, n. 12, p. i289, doi. 10.1093/bioinformatics/btp232
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Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy.
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- Bioinformatics, 2009, v. 25, n. 12, p. i348, doi. 10.1093/bioinformatics/btp216
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IsoRankN: spectral methods for global alignment of multiple protein networks.
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- Bioinformatics, 2009, v. 25, n. 12, p. i253, doi. 10.1093/bioinformatics/btp203
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PICKY: a novel SVD-based NMR spectra peak picking method.
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- Bioinformatics, 2009, v. 25, n. 12, p. i268, doi. 10.1093/bioinformatics/btp225
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Network-based prediction of metabolic enzymes subcellular localization.
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- Bioinformatics, 2009, v. 25, n. 12, p. i247, doi. 10.1093/bioinformatics/btp209
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Domain-oriented edge-based alignment of protein interaction networks.
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- Bioinformatics, 2009, v. 25, n. 12, p. i240, doi. 10.1093/bioinformatics/btp202
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A stochastic model for the evolution of metabolic networks with neighbor dependence.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1528, doi. 10.1093/bioinformatics/btp262
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Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1513, doi. 10.1093/bioinformatics/btp240
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ModLink: improving fold recognition by using protein-protein interactions.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1506, doi. 10.1093/bioinformatics/btp238
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Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1521, doi. 10.1093/bioinformatics/btp235
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Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation.
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- Bioinformatics, 2009, v. 25, n. 12, p. i296, doi. 10.1093/bioinformatics/btp204
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WebGBrowse--a web server for GBrowse.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1550, doi. 10.1093/bioinformatics/btp239
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BIPA: a database for protein-nucleic acid interaction in 3D structures.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1559, doi. 10.1093/bioinformatics/btp243
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Global alignment of protein-protein interaction networks by graph matching methods.
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- Bioinformatics, 2009, v. 25, n. 12, p. i259, doi. 10.1093/bioinformatics/btp196
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A local multiple alignment method for detection of non-coding RNA sequences.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1498, doi. 10.1093/bioinformatics/btp261
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BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1556, doi. 10.1093/bioinformatics/btp254
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Speeding up HMM algorithms for genetic linkage analysis via chain reductions of the state space.
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- Bioinformatics, 2009, v. 25, n. 12, p. i196, doi. 10.1093/bioinformatics/btp224
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A general computational method for robustness analysis with applications to synthetic gene networks.
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- Bioinformatics, 2009, v. 25, n. 12, p. i169, doi. 10.1093/bioinformatics/btp200
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ISMB/ECCB 2009 Proceedings papers committee.
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- Bioinformatics, 2009, v. 25, n. 12, p. i2, doi. 10.1093/bioinformatics/btp260
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- Article
Probabilistic retrieval and visualization of biologically relevant microarray experiments.
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- Bioinformatics, 2009, v. 25, n. 12, p. i145, doi. 10.1093/bioinformatics/btp215
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A Classifier-based approach to identify genetic similarities between diseases.
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- Bioinformatics, 2009, v. 25, n. 12, p. i21, doi. 10.1093/bioinformatics/btp226
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A framework to refine particle clusters produced by EMAN.
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- Bioinformatics, 2009, v. 25, n. 12, p. i276, doi. 10.1093/bioinformatics/btp219
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CROC: finding chromosomal clusters in eukaryotic genomes.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1552, doi. 10.1093/bioinformatics/btp248
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Fewer permutations, more accurate P-values.
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- Bioinformatics, 2009, v. 25, n. 12, p. i161, doi. 10.1093/bioinformatics/btp211
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Ontology quality assurance through analysis of term transformations.
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- Bioinformatics, 2009, v. 25, n. 12, p. i77, doi. 10.1093/bioinformatics/btp195
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Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum.
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- Bioinformatics, 2009, v. 25, n. 12, p. i15, doi. 10.1093/bioinformatics/btp189
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Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data.
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- Bioinformatics, 2009, v. 25, n. 12, p. i231, doi. 10.1093/bioinformatics/btp229
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Proteome coverage prediction with infinite Markov models.
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- Bioinformatics, 2009, v. 25, n. 12, p. i154, doi. 10.1093/bioinformatics/btp233
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Gene regulation in the intraerythrocytic cycle of Plasmodium falciparum.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1484, doi. 10.1093/bioinformatics/btp179
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E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
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- Bioinformatics, 2009, v. 25, n. 12, p. i179, doi. 10.1093/bioinformatics/btp223
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Protein function annotation from sequence: prediction of residues interacting with RNA.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1492, doi. 10.1093/bioinformatics/btp257
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Application and evaluation of automated semantic annotation of gene expression experiments.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1543, doi. 10.1093/bioinformatics/btp259
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Model-based clustering of array CGH data.
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- Bioinformatics, 2009, v. 25, n. 12, p. i30, doi. 10.1093/bioinformatics/btp205
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