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PoPMuSiC, rationally designing point mutations in protein structures.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1701, doi. 10.1093/bioinformatics/18.12.1701
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ADME-AP: a database of ADME associated proteins.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1699, doi. 10.1093/bioinformatics/18.12.1699
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PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1666, doi. 10.1093/bioinformatics/18.12.1666
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OWEN: aligning long collinear regions of genomes.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1703, doi. 10.1093/bioinformatics/18.12.1703
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The GeneAround GO viewer.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1705, doi. 10.1093/bioinformatics/18.12.1705
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Oligodb--interactive design of oligo DNA for ranscription profiling of human genes.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1686, doi. 10.1093/bioinformatics/18.12.1686
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GeneCards™ 2002: towards a complete, object-oriented, human gene compendium.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1542, doi. 10.1093/bioinformatics/18.11.1542
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GENECOUNTING: haplotype analysis with missing genotypes.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1694, doi. 10.1093/bioinformatics/18.12.1694
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DNACompress: fast and effective DNA sequence compression.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1696, doi. 10.1093/bioinformatics/18.12.1696
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RED: the analysis, management and dissemination of expressed sequence tags.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1692, doi. 10.1093/bioinformatics/18.12.1692
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Design of endonuclease restriction sites into primers for PCR cloning.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1690, doi. 10.1093/bioinformatics/18.12.1690
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Local structure-based sequence profile database for local and global protein structure predictions.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1650, doi. 10.1093/bioinformatics/18.12.1650
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PCR designer for restriction analysis of various types of sequence mutation.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1688
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Modeling the percolation of annotation errors in a database of protein sequences.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1641, doi. 10.1093/bioinformatics/18.12.1641
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- Article
Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1633, doi. 10.1093/bioinformatics/18.12.1633
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- Article
SNPper: retrieval and analysis of human SNPs.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1681, doi. 10.1093/bioinformatics/18.12.1681
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A hierarchical approach to aligning collinear regions of genomes.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1673, doi. 10.1093/bioinformatics/18.12.1673
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- Article
QuickTree: building huge Neighbour-Joining trees of protein sequences.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1546, doi. 10.1093/bioinformatics/18.11.1546
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- Article
Structure--dependent sequence alignment for remotely related proteins.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1658, doi. 10.1093/bioinformatics/18.12.1658
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Partial least squares proportional hazard regression for application to DNA microarray survival data.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1625, doi. 10.1093/bioinformatics/18.12.1625
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A decomposition model to track gene expression signatures: preview on observer-independent classification of ovarian cancer.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1617, doi. 10.1093/bioinformatics/18.12.1617
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Between-group analysis of microarray data.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1600, doi. 10.1093/bioinformatics/18.12.1600
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Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1609, doi. 10.1093/bioinformatics/18.12.1609
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Analysis of high density expression microarrays with signed-rank call algorithms.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1593, doi. 10.1093/bioinformatics/18.12.1593
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Robust estimators for expression analysis.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1585, doi. 10.1093/bioinformatics/18.12.1585
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Comparing expression profiles of genes with similar promoter regions.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1576, doi. 10.1093/bioinformatics/18.12.1576
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Computational antisense oligo prediction with a neural network model.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1567, doi. 10.1093/bioinformatics/18.12.1567
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The presence of signal peptide significantly affects transmembrane topology prediction.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1562, doi. 10.1093/bioinformatics/18.12.1562
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Accomplishments and challenges in literature data mining for biology.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1553, doi. 10.1093/bioinformatics/18.12.1553
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Editorial.
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- Bioinformatics, 2002, v. 18, n. 12, p. 1551
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Ramachandran plot on the web†This work is dedicated to Late Professor G. N. Ramachandran.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1548, doi. 10.1093/bioinformatics/18.11.1548
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SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1540, doi. 10.1093/bioinformatics/18.11.1540
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AcePrimer: automation of PCR primer design based on gene structure.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1538, doi. 10.1093/bioinformatics/18.11.1538
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An evaluation of β-turn prediction methods.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1508, doi. 10.1093/bioinformatics/18.11.1508
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A motif of a microbial starch-binding domain found in human genethonin.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1534, doi. 10.1093/bioinformatics/18.11.1534
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- Article
Poxvirus Orthologous Clusters (POCs).
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- Bioinformatics, 2002, v. 18, n. 11, p. 1544, doi. 10.1093/bioinformatics/18.11.1544
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Euclidian space and grouping of biological objects.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1523, doi. 10.1093/bioinformatics/18.11.1523
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The mutual information: Detecting and evaluating dependencies between variables.
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- Bioinformatics, 2002, v. 18, p. S231, doi. 10.1093/bioinformatics/18.suppl_2.S231
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Finding relevant references to genes and proteins in Medline using a Bayesian approach.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1515, doi. 10.1093/bioinformatics/18.11.1515
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Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1462, doi. 10.1093/bioinformatics/18.11.1462
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Empirical determination of effective gap penalties for sequence comparison.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1500, doi. 10.1093/bioinformatics/18.11.1500
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A simulated annealing algorithm for finding consensus sequences.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1494, doi. 10.1093/bioinformatics/18.11.1494
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A duplication growth model of gene expression networks.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1486, doi. 10.1093/bioinformatics/18.11.1486
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Statistical analysis of a small set of time-ordered gene expression data using linear splines.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1477, doi. 10.1093/bioinformatics/18.11.1477
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Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1470, doi. 10.1093/bioinformatics/18.11.1470
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BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks.
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- Bioinformatics, 2002, v. 18, p. S219, doi. 10.1093/bioinformatics/18.suppl_2.S219
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Comparison of microarray designs for class comparison and class discovery.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1438, doi. 10.1093/bioinformatics/18.11.1438
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PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1432
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MethPrimer: designing primers for methylation PCRs.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1427
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Nonparametric methods for identifying differentially expressed genes in microarray data.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1454, doi. 10.1093/bioinformatics/18.11.1454
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