Works matching IS 0999193X AND DT 2024 AND VI 56 AND IP 1

Results: 80

Ancestral alleles defined for 70 million cattle variants using a population-based likelihood ratio test.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00879-6

By:

Dorji, Jigme;
Reverter, Antonio;
Alexandre, Pamela A.;
Chamberlain, Amanda J.;
Vander-Jagt, Christy J.;
Kijas, James;
Porto-Neto, Laercio R.

Publication type:

Article

Correction: Validation of reaction norm breeding values for robustness in Australian sheep.

Published in:

2024

By:

Waters, Dominic L.;
Clark, Sam A.;
Brown, Daniel J.;
Walkom, Samuel F.;
van der Werf, Julius H. J.

Publication type:

Correction Notice

The demographic history and adaptation of Canarian goat breeds to environmental conditions through the use of genome-wide SNP data.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00869-0

By:

Senczuk, Gabriele;
Macrì, Martina;
Di Civita, Marika;
Mastrangelo, Salvatore;
del Rosario Fresno, Maria;
Capote, Juan;
Pilla, Fabio;
Delgado, Juan Vicente;
Amills, Marcel;
Martínez, Amparo

Publication type:

Article

Correction: Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis.

Published in:

2024

By:

Valdés-Hernández, Jesús;
Folch, Josep M.;
Crespo-Piazuelo, Daniel;
Passols, Magí;
Sebastià, Cristina;
Criado-Mesas, Lourdes;
Castelló, Anna;
Sánchez, Armand;
Ramayo-Caldas, Yuliaxis

Publication type:

Correction Notice

Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss).

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00884-9

By:

Paul, Katy;
Restoux, Gwendal;
Phocas, Florence

Publication type:

Article

Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00882-x

By:

Valdés-Hernández, Jesús;
Folch, Josep M.;
Crespo-Piazuelo, Daniel;
Passols, Magí;
Sebastià, Cristina;
Criado-Mesas, Lourdes;
Castelló, Anna;
Sánchez, Armand;
Ramayo-Caldas, Yuliaxis

Publication type:

Article

Inbreeding depression is associated with recent homozygous-by-descent segments in Belgian Blue beef cattle.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00878-7

By:

Naji, Maulana Mughitz;
Gualdrón Duarte, José Luis;
Forneris, Natalia Soledad;
Druet, Tom

Publication type:

Article

Validation of reaction norm breeding values for robustness in Australian sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00872-5

By:

Waters, Dominic L.;
Clark, Sam A.;
Brown, Daniel J.;
Walkom, Samuel F.;
van der Werf, Julius H. J.

Publication type:

Article

The potential of microbiota information to better predict efficiency traits in growing pigs fed a conventional and a high-fiber diet.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00865-4

By:

Déru, Vanille;
Tiezzi, Francesco;
Carillier-Jacquin, Céline;
Blanchet, Benoit;
Cauquil, Laurent;
Zemb, Olivier;
Bouquet, Alban;
Maltecca, Christian;
Gilbert, Hélène

Publication type:

Article

Simulation of dual-purpose chicken breeding programs implementing gene editing.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00874-3

By:

Chuang, Edward Y. S.;
Wellmann, Robin;
Meijboom, Franck L. B.;
Tetens, Jens;
Bennewitz, Jörn

Publication type:

Article

A cautionary tale of low-pass sequencing and imputation with respect to haplotype accuracy.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00875-w

By:

Wragg, David;
Zhang, Wengang;
Peterson, Sarah;
Yerramilli, Murthy;
Mellanby, Richard;
Schoenebeck, Jeffrey J.;
Clements, Dylan N.

Publication type:

Article

Advances in understanding the genetic architecture of antibody response to paratuberculosis in sheep by heritability estimate and LDLA mapping analyses and investigation of candidate regions using sequence-based data.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00873-4

By:

Usai, Mario Graziano;
Casu, Sara;
Sechi, Tiziana;
Salaris, Sotero L.;
Miari, Sabrina;
Mulas, Giuliana;
Cancedda, Maria Giovanna;
Ligios, Ciriaco;
Carta, Antonello

Publication type:

Article

Validation of reaction norm breeding values for robustness in Australian sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00872-5

By:

Waters, Dominic L.;
Clark, Sam A.;
Brown, Daniel J.;
Walkom, Samuel F.;
van der Werf, Julius H. J.

Publication type:

Article

Estimating the heritability of nitrogen and carbon isotopes in the tail hair of beef cattle.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00870-7

By:

Moradi, Morteza;
Warburton, Christie L.;
Porto-Neto, Laercio Ribeiro;
Silva, Luis F. P.

Publication type:

Article

Phenotype transition from wild mouflon to domestic sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-023-00871-6

By:

Mereu, Paolo;
Pirastru, Monica;
Sanna, Daria;
Bassu, Giovanni;
Naitana, Salvatore;
Leoni, Giovanni Giuseppe

Publication type:

Article

Sex identification in rainbow trout using genomic information and machine learning.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00944-0

By:

Kudinov, Andrei A.;
Kause, Antti

Publication type:

Article

Haplotype analysis incorporating ancestral origins identified novel genetic loci associated with chicken body weight using an advanced intercross line.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00946-y

By:

Bu, Lina;
Wang, Yuzhe;
Tan, Lizhi;
Wen, Zilong;
Hu, Xiaoxiang;
Zhang, Zhiwu;
Zhao, Yiqiang

Publication type:

Article

Predicted breeding values for relative scrapie susceptibility for genotyped and ungenotyped sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00947-x

By:

Eiríksson, Jón H.;
Þórarinsdóttir, Þórdís;
Gautason, Egill

Publication type:

Article

Changes in allele frequencies and genetic architecture due to selection in two pig populations.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00941-3

By:

Wientjes, Yvonne C. J.;
Peeters, Katrijn;
Bijma, Piter;
Huisman, Abe E.;
Calus, Mario P. L.

Publication type:

Article

On the inverse association between the number of QTL and the trait-specific genomic relationship of a candidate to the training set.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00940-4

By:

Stricker, Christian;
Fernando, Rohan L.;
Melchinger, Albrecht;
Auinger, Hans-Juergen;
Schoen, Chris-Carolin

Publication type:

Article

On the ability of the LR method to detect bias when there is pedigree misspecification and lack of connectedness.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00943-1

By:

Pardo, Alan M.;
Legarra, Andres;
Vitezica, Zulma G.;
Forneris, Natalia S.;
Maizon, Daniel O.;
Munilla, Sebastián

Publication type:

Article

A computationally efficient algorithm to leverage average information REML for (co)variance component estimation in the genomic era.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00939-x

By:

Strandén, Ismo;
Mäntysaari, Esa A.;
Lidauer, Martin H.;
Thompson, Robin;
Gao, Hongding

Publication type:

Article

Empirical versus estimated accuracy of imputation: optimising filtering thresholds for sequence imputation.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00942-2

By:

Nguyen, Tuan V.;
Bolormaa, Sunduimijid;
Reich, Coralie M.;
Chamberlain, Amanda J.;
Vander Jagt, Christy J.;
Daetwyler, Hans D.;
MacLeod, Iona M.

Publication type:

Article

The effect of phenotyping, adult selection, and mating strategies on genetic gain and rate of inbreeding in black soldier fly breeding programs.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00938-y

By:

Slagboom, Margot;
Nielsen, Hanne Marie;
Kargo, Morten;
Henryon, Mark;
Hansen, Laura Skrubbeltrang

Publication type:

Article

Equivalence of variance components between standard and recursive genetic models using LDL′ transformations.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00901-x

By:

Varona, Luis;
López-Carbonell, David;
Srihi, Houssemeddine;
Hervás-Rivero, Carlos;
González-Recio, Óscar;
Altarriba, Juan

Publication type:

Article

Estimating genomic relationships of metafounders across and within breeds using maximum likelihood, pseudo-expectation–maximization maximum likelihood and increase of relationships.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00892-9

By:

Legarra, Andres;
Bermann, Matias;
Mei, Quanshun;
Christensen, Ole F.

Publication type:

Article

Redefining and interpreting genomic relationships of metafounders.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00891-w

By:

Legarra, Andres;
Bermann, Matias;
Mei, Quanshun;
Christensen, Ole F.

Publication type:

Article

Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00936-0

By:

Copley, James P.;
Hayes, Benjamin J.;
Ross, Elizabeth M.;
Speight, Shannon;
Fordyce, Geoffry;
Wood, Benjamin J.;
Engle, Bailey N.

Publication type:

Article

QTL analysis to identify genes involved in the trade-off between silk protein synthesis and larva-pupa transition in silkworms.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00937-z

By:

Gao, Rui;
Li, Chunlin;
Zhou, Ang;
Wang, Xiachao;
Lu, Kupeng;
Zuo, Weidong;
Hu, Hai;
Han, Minjin;
Tong, Xiaoling;
Dai, Fangyin

Publication type:

Article

Combined genomic evaluation of Merino and Dohne Merino Australian sheep populations.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00934-2

By:

Wicki, Marine;
Brown, Daniel J.;
Gurman, Phillip M.;
Raoul, Jérôme;
Legarra, Andrés;
Swan, Andrew A.

Publication type:

Article

A million-cow genome-wide association study of productive life in U.S. Holstein cows.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00935-1

By:

Liang, Zuoxiang;
Prakapenka, Dzianis;
Zaabza, Hafedh B.;
VanRaden, Paul M.;
Van Tassell, Curtis P.;
Da, Yang

Publication type:

Article

Identification of genomic regions associated with fatty acid metabolism across blood, liver, backfat and muscle in pigs.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00933-3

By:

Liu, Junhui;
Sebastià, Cristina;
Jové-Juncà, Teodor;
Quintanilla, Raquel;
González-Rodríguez, Olga;
Passols, Magí;
Castelló, Anna;
Sánchez, Armand;
Ballester, Maria;
Folch, Josep M.

Publication type:

Article

Genotyping both live and dead animals to improve post-weaning survival of pigs in breeding programs.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00932-4

By:

Sharif-Islam, Md;
van der Werf, Julius H. J.;
Henryon, Mark;
Chu, Thinh Tuan;
Wood, Benjamin J.;
Hermesch, Susanne

Publication type:

Article

A comprehensive atlas of nuclear sequences of mitochondrial origin (NUMT) inserted into the pig genome.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00930-6

By:

Bolner, Matteo;
Bovo, Samuele;
Ballan, Mohamad;
Schiavo, Giuseppina;
Taurisano, Valeria;
Ribani, Anisa;
Bertolini, Francesca;
Fontanesi, Luca

Publication type:

Article

Mitochondrial sequence variants: testing imputation accuracy and their association with dairy cattle milk traits.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00931-5

By:

Dorji, Jigme;
Chamberlain, Amanda J.;
Reich, Coralie M.;
VanderJagt, Christy J.;
Nguyen, Tuan V.;
Daetwyler, Hans D.;
MacLeod, Iona M.

Publication type:

Article

Genetic parameters and genotype-by-environment interaction estimates for growth and feed efficiency related traits in Chinook salmon, Oncorhynchus tshawytscha, reared under low and moderate flow regimes.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00929-z

By:

Prescott, Leteisha A.;
Scholtens, Megan R.;
Walker, Seumas P.;
Clarke, Shannon M.;
Dodds, Ken G.;
Miller, Matthew R.;
Semmens, Jayson M.;
Carter, Chris G.;
Symonds, Jane E.

Publication type:

Article

Segregation GWAS to linearize a non-additive locus with incomplete penetrance: an example of horn status in sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00928-0

By:

Duijvesteijn, Naomi;
van der Werf, Julius H. J.;
Kinghorn, Brian P.

Publication type:

Article

Population structure and breed identification of Chinese indigenous sheep breeds using whole genome SNPs and InDels.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00927-1

By:

Zhao, Chang-heng;
Wang, Dan;
Yang, Cheng;
Chen, Yan;
Teng, Jun;
Zhang, Xin-yi;
Cao, Zhi;
Wei, Xian-ming;
Ning, Chao;
Yang, Qi-en;
Lv, Wen-fa;
Zhang, Qin

Publication type:

Article

Marker effect p-values for single-step GWAS with the algorithm for proven and young in large genotyped populations.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00925-3

By:

Leite, Natália Galoro;
Bermann, Matias;
Tsuruta, Shogo;
Misztal, Ignacy;
Lourenco, Daniela

Publication type:

Article

A computationally feasible multi-trait single-step genomic prediction model with trait-specific marker weights.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00926-2

By:

Strandén, Ismo;
Jenko, Janez

Publication type:

Article

The black honey bee genome: insights on specific structural elements and a first step towards pangenomes.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00917-3

By:

Eynard, Sonia E.;
Klopp, Christophe;
Canale-Tabet, Kamila;
Marande, William;
Vandecasteele, Céline;
Roques, Céline;
Donnadieu, Cécile;
Boone, Quentin;
Servin, Bertrand;
Vignal, Alain

Publication type:

Article

Allele-specific binding variants causing ChIP-seq peak height of histone modification are not enriched in expression QTL annotations.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00916-4

By:

Ghoreishifar, Mohammad;
Chamberlain, Amanda J.;
Xiang, Ruidong;
Prowse-Wilkins, Claire P.;
Lopdell, Thomas J.;
Littlejohn, Mathew D.;
Pryce, Jennie E.;
Goddard, Michael E.

Publication type:

Article

Genetic parameters for novel climatic resilience indicators derived from automatically-recorded vaginal temperature in lactating sows under heat stress conditions.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00908-4

By:

Wen, Hui;
Johnson, Jay S.;
Gloria, Leonardo S.;
Araujo, Andre C.;
Maskal, Jacob M.;
Hartman, Sharlene Olivette;
de Carvalho, Felipe E.;
Rocha, Artur Oliveira;
Huang, Yijian;
Tiezzi, Francesco;
Maltecca, Christian;
Schinckel, Allan P.;
Brito, Luiz F.

Publication type:

Article

Breeding for resilience in finishing pigs can decrease tail biting, lameness and mortality.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00919-1

By:

Gorssen, Wim;
Winters, Carmen;
Meyermans, Roel;
Chapard, Léa;
Hooyberghs, Katrijn;
Depuydt, Jürgen;
Janssens, Steven;
Mulder, Han;
Buys, Nadine

Publication type:

Article

Analysis of the genetic variance of fibre diameter measured along the wool staple for use as a potential indicator of resilience in sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00924-4

By:

Smith, Erin G.;
Waters, Dominic L.;
Walkom, Samuel F.;
Clark, Sam A.

Publication type:

Article

Using high-density SNP data to unravel the origin of the Franches-Montagnes horse breed.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00922-6

By:

Gmel, Annik Imogen;
Mikko, Sofia;
Ricard, Anne;
Velie, Brandon D.;
Gerber, Vinzenz;
Hamilton, Natasha Anne;
Neuditschko, Markus

Publication type:

Article

Genetic diversity of United States Rambouillet, Katahdin and Dorper sheep.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00905-7

By:

Becker, Gabrielle M.;
Thorne, Jacob W.;
Burke, Joan M.;
Lewis, Ronald M.;
Notter, David R.;
Morgan, James L. M.;
Schauer, Christopher S.;
Stewart, Whit C.;
Redden, R. R.;
Murdoch, Brenda M.

Publication type:

Article

Investigating the footprint of post-domestication dispersal on the diversity of modern European, African and Asian goats.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00923-5

By:

Petretto, Elena;
Dettori, Maria Luisa;
Luigi-Sierra, María Gracia;
Noce, Antonia;
Pazzola, Michele;
Vacca, Giuseppe Massimo;
Molina, Antonio;
Martínez, Amparo;
Goyache, Félix;
Carolan, Sean;
Kijas, James;
Guldbrandtsen, Bernt;
Kantanen, Juha;
Duby, Dylan;
Martin, Pierre;
Danchin, Coralie;
Duclos, Delphine;
Allain, Daniel;
Arquet, Rémy;
Mandonnet, Nathalie

Publication type:

Article

Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00920-8

By:

Cai, Zexi;
Iso-Touru, Terhi;
Sanchez, Marie-Pierre;
Kadri, Naveen;
Bouwman, Aniek C.;
Chitneedi, Praveen Krishna;
MacLeod, Iona M.;
Vander Jagt, Christy J.;
Chamberlain, Amanda J.;
Gredler-Grandl, Birgit;
Spengeler, Mirjam;
Lund, Mogens Sandø;
Boichard, Didier;
Kühn, Christa;
Pausch, Hubert;
Vilkki, Johanna;
Sahana, Goutam

Publication type:

Article

The RHCE gene encodes the chicken blood system I.

Published in:

Genetics Selection Evolution, 2024, v. 56, n. 1, p. 1, doi. 10.1186/s12711-024-00911-9

By:

Fulton, Janet E.;
McCarron, Amy M.;
Lund, Ashlee R.;
Drobik-Czwarno, Wioleta;
Mullen, Abigail;
Wolc, Anna;
Szadkowska, Joanna;
Schmidt, Carl J.;
Taylor Jr, Robert L.

Publication type:

Article