Works in Genetics Selection Evolution, 2020, Vol 52, Issue 1

Results: 70

A deterministic equation to predict the accuracy of multi-population genomic prediction with multiple genomic relationship matrices.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00540-y

By:

Raymond, Biaty;
Wientjes, Yvonne C. J.;
Bouwman, Aniek C.;
Schrooten, Chris;
Veerkamp, Roel F.

Publication type:

Article

Challenging the selection for consistency in the rank of endurance competitions.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00539-5

By:

Cervantes, Isabel;
Bodin, Loys;
Valera, Mercedes;
Molina, Antonio;
Gutiérrez, Juan Pablo

Publication type:

Article

Identification of the ABCC4, IER3, and CBFA2T2 candidate genes for resistance to paratuberculosis from sequence-based GWAS in Holstein and Normande dairy cattle.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00535-9

By:

Sanchez, Marie-Pierre;
Guatteo, Raphaël;
Davergne, Aurore;
Saout, Judikael;
Grohs, Cécile;
Deloche, Marie-Christine;
Taussat, Sébastien;
Fritz, Sébastien;
Boussaha, Mekki;
Blanquefort, Philippe;
Delafosse, Arnaud;
Joly, Alain;
Schibler, Laurent;
Fourichon, Christine;
Boichard, Didier

Publication type:

Article

Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00531-z

By:

Abdollahi-Arpanahi, Rostam;
Gianola, Daniel;
Peñagaricano, Francisco

Publication type:

Article

Distinguishing pleiotropy from linked QTL between milk production traits and mastitis resistance in Nordic Holstein cattle.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00538-6

By:

Cai, Zexi;
Dusza, Magdalena;
Guldbrandtsen, Bernt;
Lund, Mogens Sandø;
Sahana, Goutam

Publication type:

Article

Fast parallelized sampling of Bayesian regression models for whole-genome prediction.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00533-x

By:

Zhao, Tianjing;
Fernando, Rohan;
Garrick, Dorian;
Cheng, Hao

Publication type:

Article

Genotype calling of triploid offspring from diploid parents.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00534-w

By:

Grashei, Kim Erik;
Ødegård, Jørgen;
Meuwissen, Theo H. E.

Publication type:

Article

pCADD: SNV prioritisation in Sus scrofa.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0528-9

By:

Groß, Christian;
Derks, Martijn;
Megens, Hendrik-Jan;
Bosse, Mirte;
Groenen, Martien A. M.;
Reinders, Marcel;
de Ridder, Dick

Publication type:

Article

Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00537-7

By:

Ros-Freixedes, Roger;
Whalen, Andrew;
Gorjanc, Gregor;
Mileham, Alan J.;
Hickey, John M.

Publication type:

Article

Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00536-8

By:

Ros-Freixedes, Roger;
Whalen, Andrew;
Chen, Ching-Yi;
Gorjanc, Gregor;
Herring, William O.;
Mileham, Alan J.;
Hickey, John M.

Publication type:

Article

Beyond large-effect loci: large-scale GWAS reveals a mixed large-effect and polygenic architecture for age at maturity of Atlantic salmon.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0529-8

By:

Sinclair-Waters, Marion;
Ødegård, Jørgen;
Korsvoll, Sven Arild;
Moen, Thomas;
Lien, Sigbjørn;
Primmer, Craig R.;
Barson, Nicola J.

Publication type:

Article

SeqBreed: a python tool to evaluate genomic prediction in complex scenarios.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0530-2

By:

Pérez-Enciso, Miguel;
Ramírez-Ayala, Lino C.;
Zingaretti, Laura M.

Publication type:

Article

The predictive ability of indirect genetic models is reduced when culled animals are omitted from the data.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0527-x

By:

Ask, Birgitte;
Christensen, Ole F.;
Heidaritabar, Marzieh;
Madsen, Per;
Nielsen, Hanne M.

Publication type:

Article

An eQTL in the cystathionine beta synthase gene is linked to osteoporosis in laying hens.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00532-y

By:

De Koning, Dirk-Jan;
Dominguez-Gasca, Nazaret;
Fleming, Robert H.;
Gill, Andrew;
Kurian, Dominic;
Law, Andrew;
McCormack, Heather A.;
Morrice, David;
Sanchez-Rodriguez, Estefania;
Rodriguez-Navarro, Alejandro B.;
Preisinger, Rudolf;
Schmutz, Matthias;
Šmídová, Veronica;
Turner, Frances;
Wilson, Peter W.;
Zhou, Rongyan;
Dunn, Ian C.

Publication type:

Article

Are scurs in heterozygous polled (Pp) cattle a complex quantitative trait?

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0525-z

By:

Gehrke, Lilian Johanna;
Capitan, Aurélien;
Scheper, Carsten;
König, Sven;
Upadhyay, Maulik;
Heidrich, Kristin;
Russ, Ingolf;
Seichter, Doris;
Tetens, Jens;
Medugorac, Ivica;
Thaller, Georg

Publication type:

Article

The genetic correlation between feed conversion ratio and growth rate affects the design of a breeding program for more sustainable fish production.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0524-0

By:

Besson, Mathieu;
Komen, Hans;
Rose, Gus;
Vandeputte, Marc

Publication type:

Article

Genomic regions associated with muscularity in beef cattle differ in five contrasting cattle breeds.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0523-1

By:

Doyle, Jennifer L.;
Berry, Donagh P.;
Veerkamp, Roel F.;
Carthy, Tara R.;
Evans, Ross D.;
Walsh, Siobhán W.;
Purfield, Deirdre C.

Publication type:

Article

The economic value of R0 for selective breeding against microparasitic diseases.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-0526-y

By:

Janssen, Kasper;
Bijma, Piter

Publication type:

Article

Genomic dissection of maternal, additive and non-additive genetic effects for growth and carcass traits in Nile tilapia.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-019-0522-2

By:

Joshi, Rajesh;
Meuwissen, Theo H. E.;
Woolliams, John A.;
Gjøen, Hans M.

Publication type:

Article

Male recombination map of the autosomal genome in German Holstein.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00593-z

By:

Qanbari, Saber;
Wittenburg, Dörte

Publication type:

Article

A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00592-0

By:

Gòdia, Marta;
Reverter, Antonio;
González-Prendes, Rayner;
Ramayo-Caldas, Yuliaxis;
Castelló, Anna;
Rodríguez-Gil, Joan-Enric;
Sánchez, Armand;
Clop, Alex

Publication type:

Article

Advances and perspectives in selecting resistance traits against the parasitic mite Varroa destructor in honey bees.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00591-1

By:

Guichard, Matthieu;
Dietemann, Vincent;
Neuditschko, Markus;
Dainat, Benjamin

Publication type:

Article

Correction to: Genomic diversity and population structure of the Leonberger dog breed.

Published in:

2020

By:

Letko, Anna;
Minor, Katie M.;
Jagannathan, Vidhya;
Seefried, Franz R.;
Mickelson, James R.;
Oliehoek, Pieter;
Drögemüller, Cord

Publication type:

Correction Notice

Spatial modelling improves genetic evaluation in smallholder breeding programs.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00588-w

By:

Selle, Maria L.;
Steinsland, Ingelin;
Powell, Owen;
Hickey, John M.;
Gorjanc, Gregor

Publication type:

Article

A 50-kb deletion disrupting the RSPO2 gene is associated with tetradysmelia in Holstein Friesian cattle.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00586-y

By:

Becker, Doreen;
Weikard, Rosemarie;
Schulze, Christoph;
Wohlsein, Peter;
Kühn, Christa

Publication type:

Article

Gene networks for three feed efficiency criteria reveal shared and specific biological processes.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00585-z

By:

Taussat, Sébastien;
Boussaha, Mekki;
Ramayo-Caldas, Yuliaxis;
Martin, Pauline;
Venot, Eric;
Cantalapiedra-Hijar, Gonzalo;
Hozé, Chris;
Fritz, Sébastien;
Renand, Gilles

Publication type:

Article

Genomic regions and signaling pathways associated with indicator traits for feed efficiency in juvenile Atlantic salmon (Salmo salar).

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00587-x

By:

Dvergedal, Hanne;
Harvey, Thomas Nelson;
Jin, Yang;
Ødegård, Jørgen;
Grønvold, Lars;
Sandve, Simen Rød;
Våge, Dag Inge;
Moen, Thomas;
Klemetsdal, Gunnar

Publication type:

Article

Optimizing genomic reference populations to improve crossbred performance.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00573-3

By:

Wientjes, Yvonne C. J.;
Bijma, Piter;
Calus, Mario P. L.

Publication type:

Article

Inbreeding depression across the genome of Dutch Holstein Friesian dairy cattle.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00583-1

By:

Doekes, Harmen P.;
Bijma, Piter;
Veerkamp, Roel F.;
de Jong, Gerben;
Wientjes, Yvonne C. J.;
Windig, Jack J.

Publication type:

Article

Development of a genetic evaluation for hair shedding in American Angus cattle to improve thermotolerance.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00584-0

By:

Durbin, Harly J.;
Lu, Duc;
Yampara-Iquise, Helen;
Miller, Stephen P.;
Decker, Jared E.

Publication type:

Article

Genetic inbreeding depression load for morphological traits and defects in the Pura Raza Española horse.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00582-2

By:

Poyato-Bonilla, Julia;
Perdomo-González, Davinia I.;
Sánchez-Guerrero, María J.;
Varona, Luis;
Molina, Antonio;
Casellas, Joaquim;
Valera, Mercedes

Publication type:

Article

Genomic diversity and population structure of the Leonberger dog breed.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00581-3

By:

Letko, Anna;
Minor, Katie M.;
Jagannathan, Vidhya;
Seefried, Franz R.;
Mickelson, James R.;
Oliehoek, Pieter;
Drögemüller, Cord

Publication type:

Article

Why breed disease-resilient livestock, and how?

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00580-4

By:

Knap, Pieter W.;
Doeschl-Wilson, Andrea

Publication type:

Article

Genome-wide analysis of expression QTL (eQTL) and allele-specific expression (ASE) in pig muscle identifies candidate genes for meat quality traits.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00579-x

By:

Liu, Yan;
Liu, Xiaolei;
Zheng, Zhiwei;
Ma, Tingting;
Liu, Ying;
Long, Huan;
Cheng, Huijun;
Fang, Ming;
Gong, Jing;
Li, Xinyun;
Zhao, Shuhong;
Xu, Xuewen

Publication type:

Article

Prediction of genetic merit for growth rate in pigs using animal models with indirect genetic effects and genomic information.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00578-y

By:

Poulsen, Bjarke G.;
Ask, Birgitte;
Nielsen, Hanne M.;
Ostersen, Tage;
Christensen, Ole F.

Publication type:

Article

The impact of training on data from genetically-related lines on the accuracy of genomic predictions for feed efficiency traits in pigs.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00576-0

By:

Aliakbari, Amir;
Delpuech, Emilie;
Labrune, Yann;
Riquet, Juliette;
Gilbert, Hélène

Publication type:

Article

Direct and correlated responses to selection for autumn lambing in sheep.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00577-z

By:

Asadi-Fozi, Masood;
Bradford, Heather L.;
Notter, David R.

Publication type:

Article

Theoretical and empirical comparisons of expected and realized relationships for the X-chromosome.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00570-6

By:

Druet, Tom;
Legarra, Andres

Publication type:

Article

Use of gene expression and whole-genome sequence information to improve the accuracy of genomic prediction for carcass traits in Hanwoo cattle.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00574-2

By:

de las Heras-Saldana, Sara;
Lopez, Bryan Irvine;
Moghaddar, Nasir;
Park, Woncheoul;
Park, Jong-eun;
Chung, Ki Y.;
Lim, Dajeong;
Lee, Seung H.;
Shin, Donghyun;
van der Werf, Julius H. J.

Publication type:

Article

Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00572-4

By:

Herrera-Cáceres, William;
Sánchez, Juan Pablo

Publication type:

Article

Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00571-5

By:

Ghoreishifar, Seyed Mohammad;
Eriksson, Susanne;
Johansson, Anna M.;
Khansefid, Majid;
Moghaddaszadeh-Ahrabi, Sima;
Parna, Nahid;
Davoudi, Pourya;
Javanmard, Arash

Publication type:

Article

Genetic control of temperament traits across species: association of autism spectrum disorder risk genes with cattle temperament.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00569-z

By:

Costilla, Roy;
Kemper, Kathryn E.;
Byrne, Enda M.;
Porto-Neto, Laercio R.;
Carvalheiro, Roberto;
Purfield, Deirdre C.;
Doyle, Jennifer L.;
Berry, Donagh P.;
Moore, Stephen S.;
Wray, Naomi R.;
Hayes, Ben J.

Publication type:

Article

Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00575-1

By:

Tribout, Thierry;
Croiseau, Pascal;
Lefebvre, Rachel;
Barbat, Anne;
Boussaha, Mekki;
Fritz, Sébastien;
Boichard, Didier;
Hoze, Chris;
Sanchez, Marie-Pierre

Publication type:

Article

Prediction of genomic breeding values based on pre-selected SNPs using ssGBLUP, WssGBLUP and BayesB for Edwardsiellosis resistance in Japanese flounder.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. N.PAG, doi. 10.1186/s12711-020-00566-2

By:

Lu, Sheng;
Liu, Yang;
Yu, Xijiang;
Li, Yangzhen;
Yang, Yingming;
Wei, Min;
Zhou, Qian;
Wang, Jie;
Zhang, Yingping;
Zheng, Weiwei;
Chen, Songlin

Publication type:

Article

Modeling host-microbiome interactions for the prediction of meat quality and carcass composition traits in swine.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00561-7

By:

Khanal, Piush;
Maltecca, Christian;
Schwab, Clint;
Fix, Justin;
Bergamaschi, Matteo;
Tiezzi, Francesco

Publication type:

Article

X chromosome variants are associated with male fertility traits in two bovine populations.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00563-5

By:

Fortes, Marina R. S.;
Porto-Neto, Laercio R.;
Satake, Nana;
Nguyen, Loan T.;
Freitas, Ana Claudia;
Melo, Thaise P.;
Scalez, Daiane Cristina Becker;
Hayes, Ben;
Raidan, Fernanda S. S.;
Reverter, Antonio;
Boe-Hansen, Gry B.

Publication type:

Article

Feed competition reduces heritable variation for body weight in Litopenaeus vannamei.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00565-3

By:

Luan, Sheng;
Qiang, Guangfeng;
Cao, Baoxiang;
Luo, Kun;
Meng, Xianhong;
Chen, Baolong;
Kong, Jie

Publication type:

Article

A genome-wide analysis of copy number variation in Murciano-Granadina goats.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00564-4

By:

Guan, Dailu;
Martínez, Amparo;
Castelló, Anna;
Landi, Vincenzo;
Luigi-Sierra, María Gracia;
Fernández-Álvarez, Javier;
Cabrera, Betlem;
Delgado, Juan Vicente;
Such, Xavier;
Jordana, Jordi;
Amills, Marcel

Publication type:

Article

Investigating the impact of preselection on subsequent single-step genomic BLUP evaluation of preselected animals.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00562-6

By:

Jibrila, Ibrahim;
ten Napel, Jan;
Vandenplas, Jeremie;
Veerkamp, Roel F.;
Calus, Mario P. L.

Publication type:

Article

Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00567-1

By:

Macedo, Fernando L.;
Christensen, Ole F.;
Astruc, Jean-Michel;
Aguilar, Ignacio;
Masuda, Yutaka;
Legarra, Andrés

Publication type:

Article