Works matching IS 09618368 AND DT 2025 AND VI 34 AND IP 2

Results: 30

NumSimEX: A method using EXX hydrogen exchange mass spectrometry to map the energetics of protein folding landscapes.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70045
By:
- Flint, Jasper A. G.;
- Witten, Jacob;
- Han, Isabella;
- Strahan, John;
- Damjanovic, Jovan;
- Song, Nevon;
- Poterba, Tim;
- Cartagena, Alexis Jaramillo;
- Hirsch, Angelika;
- Ni, Tony;
- Sohl, Julie L.;
- Wagaman, Amy S.;
- Jaswal, Sheila S.
Publication type:
Article
Conformational dynamics in specialized C2H2 zinc finger domains enable zinc‐responsive gene repression in S. pombe.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70044
By:
- Wadhwa, Vibhuti;
- Jamshidi, Cameron;
- Stachowski, Kye;
- Bird, Amanda J.;
- Foster, Mark P.
Publication type:
Article
Combining computational modeling and experimental library screening to affinity‐mature VEEV‐neutralizing antibody F5.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70043
By:
- Sumner, Christopher A.;
- Schwedler, Jennifer L.;
- McCoy, Katherine Maia;
- Holland, Jack;
- Duva, Valerie;
- Gelperin, Daniel;
- Busygina, Valeria;
- Stefan, Maxwell A.;
- Martinez, Daniella V.;
- Juarros, Miranda A.;
- Phillips, Ashlee M.;
- Weilhammer, Dina R.;
- Grigoryan, Gevorg;
- Kent, Michael S.;
- Harmon, Brooke N.
Publication type:
Article
Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss‐of‐function and gain‐of‐function mutants.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70042
By:
- Xu, Liang;
- Jang, Hyunbum;
- Nussinov, Ruth
Publication type:
Article
GDFold2: A fast and parallelizable protein folding environment with freely defined objective functions.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70041
By:
- Mi, Tianyu;
- Xiao, Nan;
- Gong, Haipeng
Publication type:
Article
Loop engineering of enzymes to control their immobilization and ultimately fabricate more efficient heterogeneous biocatalysts.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70040
By:
- Zeballos, Nicoll;
- Ginés‐Alcober, Irene;
- Macías‐León, Javier;
- Andrés‐Sanz, Daniel;
- González‐Ramírez, Andrés Manuel;
- Sánchez‐Costa, Mercedes;
- Merino, Pedro;
- Hurtado‐Guerrero, Ramón;
- López‐Gallego, Fernando
Publication type:
Article
Computational and experimental mapping of the allosteric network of two manganese ABC transporters.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70039
By:
- Duman, Ozge;
- Kuznetsova, Anastasiya;
- Levanon, Nurit Livnat;
- Grupper, Moti;
- Ersoy, Akarun Ayca;
- Acar, Burcin;
- Kessel, Amit;
- Ben‐Tal, Nir;
- Lewinson, Oded;
- Haliloglu, Turkan
Publication type:
Article
Cryo‐EM SPR structures of Salmonella typhimuriumArnC; the key enzyme in lipid‐A modification conferring polymyxin resistance.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70037
By:
- Patel, Dhruvin H.;
- Karimullina, Elina;
- Guo, Yirui;
- Semper, Cameron;
- Patel, Deepak T.;
- Emde, Tabitha;
- Borek, Dominika;
- Savchenko, Alexei
Publication type:
Article
Translation of the downstream ORF from bicistronic mRNAs by human cells: Impact of codon usage and splicing in the upstream ORF.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70036
By:
- Paget‐Bailly, Philippe;
- Helpiquet, Alexandre;
- Decourcelle, Mathilde;
- Bories, Roxane;
- Bravo, Ignacio G.
Publication type:
Article
Hijacking of plasminogen by dengue virus: The kringle‐4 and ‐5 domains of plasminogen binds synergistically to the domain I of envelope protein.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70035
By:
- Yuen, Yee Jun;
- Sabitha, Thekkoot;
- Li, Lim Jian;
- Walvekar, Varsha Ashok;
- Ramesh, Karthik;
- Kini, R. Manjunatha;
- Sivaraman, J.;
- Mok, Yu Keung
Publication type:
Article
Cripto‐1 acts as a molecular bridge linking nodal to ALK4 via distinct structural domains.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70034
By:
- Chu, Kit‐Yee;
- Crawford, Amberly N.;
- Krah, Bradon S.;
- Thamilselvan, Vijayalakshmi;
- Malik, Anjali;
- Aitas, Nina A.;
- Martinez‐Hackert, Erik
Publication type:
Article
Citrullination at the N‐terminal region of MDM2 by the PADI4 enzyme.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70033
By:
- Neira, José L.;
- Rizzuti, Bruno;
- Palomino‐Schätzlein, Martina;
- Rejas, Virginia;
- Abian, Olga;
- Velazquez‐Campoy, Adrian
Publication type:
Article
The multifaceted role of XCL1 in health and disease.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70032
By:
- Syed, Muhammed;
- Dishman, Acacia F.;
- Volkman, Brian F.;
- Walker, Tara L.
Publication type:
Article
AggNet: Advancing protein aggregation analysis through deep learning and protein language model.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70031
By:
- He, Wenjia;
- Xu, Xiaopeng;
- Li, Haoyang;
- Zhou, Juexiao;
- Gao, Xin
Publication type:
Article
AFFIPred: AlphaFold2 structure‐based Functional Impact Prediction of missense variations.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70030
By:
- Pir, Mustafa S;
- Timucin, Emel
Publication type:
Article
Human recombinant tyrosinase destabilization caused by the double mutation R217Q/R402Q.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70029
By:
- Toay, Sarah;
- Sheri, Narin;
- MacDonald, Ian;
- Sergeev, Yuri V.
Publication type:
Article
LEA_4 motifs function alone and in conjunction with synergistic cosolutes to protect a labile enzyme during desiccation.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70028
By:
- Nicholson, Vincent;
- Nguyen, Kenny;
- Gollub, Edith;
- McCoy, Mary;
- Yu, Feng;
- Holehouse, Alex S.;
- Sukenik, Shahar;
- Boothby, Thomas C.
Publication type:
Article
Insights into the flexibility of the domain‐linking loop in actinobacterial coproheme decarboxylase through structures and molecular dynamics simulations.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70027
By:
- Patil, Gaurav;
- Alonso de Armiño, Diego Javier;
- Guo, Yirui;
- Furtmüller, Paul G.;
- Borek, Dominika;
- Estrin, Dario A.;
- Hofbauer, Stefan
Publication type:
Article
Methods for detecting, building, and improving tryptophan mannosylation in glycoprotein structures.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70025
By:
- Holland, Lou;
- Pham, Phuong Thao;
- Bagdonas, Haroldas;
- Dialpuri, Jordan S.;
- Schofield, Lucy C.;
- Agirre, Jon
Publication type:
Article
CaXML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70023
By:
- Zhang, Pengzhi;
- Nde, Jules;
- Eliaz, Yossi;
- Jennings, Nathaniel;
- Cieplak, Piotr;
- Cheung, Margaret S.
Publication type:
Article
α‐N‐Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70021
By:
- Crone, Kathryn K.;
- Labonte, Jason W.;
- Elias, Mikael H.;
- Freeman, Michael F.
Publication type:
Article
Engineered protein G variants for multifunctional antibody‐based assemblies.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70019
By:
- Slezak, Tomasz;
- O'Leary, Kelly M.;
- Li, Jinyang;
- Rohaim, Ahmed;
- Davydova, Elena K.;
- Kossiakoff, Anthony A.
Publication type:
Article
A novel method for expressing and purifying large quantities of functional and stable human voltage‐gated proton channel (hHv1).
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70017
By:
- Carmona, Emerson M.;
- Cortes, D. Marien;
- Cuello, Luis G.
Publication type:
Article
A functional helix shuffled variant of the B domain of Staphylococcus aureus.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70012
By:
- Bobolowski, Hanna;
- Fiedler, Erik;
- Haupts, Ulrich;
- Lilie, Hauke;
- Weininger, Ulrich
Publication type:
Article
Super‐resolution imaging of proteins inside live mammalian cells with mLIVE‐PAINT.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70008
By:
- Bhaskar, Haresh;
- Gidden, Zoe;
- Virdi, Gurvir;
- Kleinjan, Dirk‐Jan;
- Rosser, Susan J.;
- Gandhi, Sonia;
- Regan, Lynne;
- Horrocks, Mathew H.
Publication type:
Article
Chemical and temporal manipulation of early steps in protein assembly tunes the structure and intermolecular interactions of protein‐based materials.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70000
By:
- Italia, Valeria;
- Jons, Amanda;
- Kaparthi, Bhavika;
- Faulk, Britt;
- Maccarini, Marco;
- Bertoncello, Paolo;
- Meissner, Ken;
- Martin, Donald K.;
- Bondos, Sarah E.
Publication type:
Article
Investigation into the effect of phenylalanine gating on anaerobic haem breakdown using the energy landscape approach.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5243
By:
- Keith, Alasdair D.;
- Sawyer, Elizabeth B.;
- Choy, Desmond C. Y.;
- Cole, James L.;
- Shang, Cheng;
- Biggs, George S.;
- Klein, Oskar James;
- Brear, Paul D.;
- Wales, David J.;
- Barker, Paul D.
Publication type:
Article
Accelerated amyloid fibril formation at the interface of liquid–liquid phase‐separated droplets by depletion interactions.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5163
By:
- Yamaguchi, Keiichi;
- Mima, Joji;
- Nakajima, Kichitaro;
- Sakuta, Hiroki;
- Yoshikawa, Kenichi;
- Goto, Yuji
Publication type:
Article
Cover Image.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5042
Publication type:
Article
Issue information.
Published in:
Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5041
Publication type:
Article

Works matching IS 09618368 AND DT 2025 AND VI 34 AND IP 2

NumSimEX: A method using EXX hydrogen exchange mass spectrometry to map the energetics of protein folding landscapes.

Conformational dynamics in specialized C<sub>2</sub>H<sub>2</sub> zinc finger domains enable zinc‐responsive gene repression in S. pombe.

Combining computational modeling and experimental library screening to affinity‐mature VEEV‐neutralizing antibody F5.

Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss‐of‐function and gain‐of‐function mutants.

GDFold2: A fast and parallelizable protein folding environment with freely defined objective functions.

Loop engineering of enzymes to control their immobilization and ultimately fabricate more efficient heterogeneous biocatalysts.

Computational and experimental mapping of the allosteric network of two manganese ABC transporters.

Cryo‐EM SPR structures of Salmonella typhimuriumArnC; the key enzyme in lipid‐A modification conferring polymyxin resistance.

Translation of the downstream ORF from bicistronic mRNAs by human cells: Impact of codon usage and splicing in the upstream ORF.

Hijacking of plasminogen by dengue virus: The kringle‐4 and ‐5 domains of plasminogen binds synergistically to the domain I of envelope protein.

Cripto‐1 acts as a molecular bridge linking nodal to ALK4 via distinct structural domains.

Citrullination at the N‐terminal region of MDM2 by the PADI4 enzyme.

The multifaceted role of XCL1 in health and disease.

AggNet: Advancing protein aggregation analysis through deep learning and protein language model.

AFFIPred: AlphaFold2 structure‐based Functional Impact Prediction of missense variations.

Human recombinant tyrosinase destabilization caused by the double mutation R217Q/R402Q.

LEA_4 motifs function alone and in conjunction with synergistic cosolutes to protect a labile enzyme during desiccation.

Insights into the flexibility of the domain‐linking loop in actinobacterial coproheme decarboxylase through structures and molecular dynamics simulations.

Methods for detecting, building, and improving tryptophan mannosylation in glycoprotein structures.

Ca<sup>X</sup>ML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features.

α‐N‐Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions.

Engineered protein G variants for multifunctional antibody‐based assemblies.

A novel method for expressing and purifying large quantities of functional and stable human voltage‐gated proton channel (hH<sub>v</sub>1).

A functional helix shuffled variant of the B domain of Staphylococcus aureus.

Super‐resolution imaging of proteins inside live mammalian cells with mLIVE‐PAINT.

Chemical and temporal manipulation of early steps in protein assembly tunes the structure and intermolecular interactions of protein‐based materials.

Investigation into the effect of phenylalanine gating on anaerobic haem breakdown using the energy landscape approach.

Accelerated amyloid fibril formation at the interface of liquid–liquid phase‐separated droplets by depletion interactions.

Cover Image.

Issue information.