Works matching IS 09618368 AND DT 2025 AND VI 34 AND IP 2

Results: 30

NumSimEX: A method using EXX hydrogen exchange mass spectrometry to map the energetics of protein folding landscapes.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70045

By:

Flint, Jasper A. G.;
Witten, Jacob;
Han, Isabella;
Strahan, John;
Damjanovic, Jovan;
Song, Nevon;
Poterba, Tim;
Cartagena, Alexis Jaramillo;
Hirsch, Angelika;
Ni, Tony;
Sohl, Julie L.;
Wagaman, Amy S.;
Jaswal, Sheila S.

Publication type:

Article

Conformational dynamics in specialized C2H2 zinc finger domains enable zinc‐responsive gene repression in S. pombe.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70044

By:

Wadhwa, Vibhuti;
Jamshidi, Cameron;
Stachowski, Kye;
Bird, Amanda J.;
Foster, Mark P.

Publication type:

Article

Combining computational modeling and experimental library screening to affinity‐mature VEEV‐neutralizing antibody F5.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70043

By:

Sumner, Christopher A.;
Schwedler, Jennifer L.;
McCoy, Katherine Maia;
Holland, Jack;
Duva, Valerie;
Gelperin, Daniel;
Busygina, Valeria;
Stefan, Maxwell A.;
Martinez, Daniella V.;
Juarros, Miranda A.;
Phillips, Ashlee M.;
Weilhammer, Dina R.;
Grigoryan, Gevorg;
Kent, Michael S.;
Harmon, Brooke N.

Publication type:

Article

Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss‐of‐function and gain‐of‐function mutants.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70042

By:

Xu, Liang;
Jang, Hyunbum;
Nussinov, Ruth

Publication type:

Article

GDFold2: A fast and parallelizable protein folding environment with freely defined objective functions.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70041

By:

Mi, Tianyu;
Xiao, Nan;
Gong, Haipeng

Publication type:

Article

Loop engineering of enzymes to control their immobilization and ultimately fabricate more efficient heterogeneous biocatalysts.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70040

By:

Zeballos, Nicoll;
Ginés‐Alcober, Irene;
Macías‐León, Javier;
Andrés‐Sanz, Daniel;
González‐Ramírez, Andrés Manuel;
Sánchez‐Costa, Mercedes;
Merino, Pedro;
Hurtado‐Guerrero, Ramón;
López‐Gallego, Fernando

Publication type:

Article

Computational and experimental mapping of the allosteric network of two manganese ABC transporters.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70039

By:

Duman, Ozge;
Kuznetsova, Anastasiya;
Levanon, Nurit Livnat;
Grupper, Moti;
Ersoy, Akarun Ayca;
Acar, Burcin;
Kessel, Amit;
Ben‐Tal, Nir;
Lewinson, Oded;
Haliloglu, Turkan

Publication type:

Article

Cryo‐EM SPR structures of Salmonella typhimuriumArnC; the key enzyme in lipid‐A modification conferring polymyxin resistance.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70037

By:

Patel, Dhruvin H.;
Karimullina, Elina;
Guo, Yirui;
Semper, Cameron;
Patel, Deepak T.;
Emde, Tabitha;
Borek, Dominika;
Savchenko, Alexei

Publication type:

Article

Translation of the downstream ORF from bicistronic mRNAs by human cells: Impact of codon usage and splicing in the upstream ORF.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70036

By:

Paget‐Bailly, Philippe;
Helpiquet, Alexandre;
Decourcelle, Mathilde;
Bories, Roxane;
Bravo, Ignacio G.

Publication type:

Article

Hijacking of plasminogen by dengue virus: The kringle‐4 and ‐5 domains of plasminogen binds synergistically to the domain I of envelope protein.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70035

By:

Yuen, Yee Jun;
Sabitha, Thekkoot;
Li, Lim Jian;
Walvekar, Varsha Ashok;
Ramesh, Karthik;
Kini, R. Manjunatha;
Sivaraman, J.;
Mok, Yu Keung

Publication type:

Article

Cripto‐1 acts as a molecular bridge linking nodal to ALK4 via distinct structural domains.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70034

By:

Chu, Kit‐Yee;
Crawford, Amberly N.;
Krah, Bradon S.;
Thamilselvan, Vijayalakshmi;
Malik, Anjali;
Aitas, Nina A.;
Martinez‐Hackert, Erik

Publication type:

Article

Citrullination at the N‐terminal region of MDM2 by the PADI4 enzyme.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70033

By:

Neira, José L.;
Rizzuti, Bruno;
Palomino‐Schätzlein, Martina;
Rejas, Virginia;
Abian, Olga;
Velazquez‐Campoy, Adrian

Publication type:

Article

The multifaceted role of XCL1 in health and disease.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70032

By:

Syed, Muhammed;
Dishman, Acacia F.;
Volkman, Brian F.;
Walker, Tara L.

Publication type:

Article

AggNet: Advancing protein aggregation analysis through deep learning and protein language model.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70031

By:

He, Wenjia;
Xu, Xiaopeng;
Li, Haoyang;
Zhou, Juexiao;
Gao, Xin

Publication type:

Article

AFFIPred: AlphaFold2 structure‐based Functional Impact Prediction of missense variations.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70030

By:

Pir, Mustafa S;
Timucin, Emel

Publication type:

Article

Human recombinant tyrosinase destabilization caused by the double mutation R217Q/R402Q.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70029

By:

Toay, Sarah;
Sheri, Narin;
MacDonald, Ian;
Sergeev, Yuri V.

Publication type:

Article

LEA_4 motifs function alone and in conjunction with synergistic cosolutes to protect a labile enzyme during desiccation.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70028

By:

Nicholson, Vincent;
Nguyen, Kenny;
Gollub, Edith;
McCoy, Mary;
Yu, Feng;
Holehouse, Alex S.;
Sukenik, Shahar;
Boothby, Thomas C.

Publication type:

Article

Insights into the flexibility of the domain‐linking loop in actinobacterial coproheme decarboxylase through structures and molecular dynamics simulations.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70027

By:

Patil, Gaurav;
Alonso de Armiño, Diego Javier;
Guo, Yirui;
Furtmüller, Paul G.;
Borek, Dominika;
Estrin, Dario A.;
Hofbauer, Stefan

Publication type:

Article

Methods for detecting, building, and improving tryptophan mannosylation in glycoprotein structures.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70025

By:

Holland, Lou;
Pham, Phuong Thao;
Bagdonas, Haroldas;
Dialpuri, Jordan S.;
Schofield, Lucy C.;
Agirre, Jon

Publication type:

Article

CaXML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70023

By:

Zhang, Pengzhi;
Nde, Jules;
Eliaz, Yossi;
Jennings, Nathaniel;
Cieplak, Piotr;
Cheung, Margaret S.

Publication type:

Article

α‐N‐Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70021

By:

Crone, Kathryn K.;
Labonte, Jason W.;
Elias, Mikael H.;
Freeman, Michael F.

Publication type:

Article

Engineered protein G variants for multifunctional antibody‐based assemblies.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70019

By:

Slezak, Tomasz;
O'Leary, Kelly M.;
Li, Jinyang;
Rohaim, Ahmed;
Davydova, Elena K.;
Kossiakoff, Anthony A.

Publication type:

Article

A novel method for expressing and purifying large quantities of functional and stable human voltage‐gated proton channel (hHv1).

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70017

By:

Carmona, Emerson M.;
Cortes, D. Marien;
Cuello, Luis G.

Publication type:

Article

A functional helix shuffled variant of the B domain of Staphylococcus aureus.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70012

By:

Bobolowski, Hanna;
Fiedler, Erik;
Haupts, Ulrich;
Lilie, Hauke;
Weininger, Ulrich

Publication type:

Article

Super‐resolution imaging of proteins inside live mammalian cells with mLIVE‐PAINT.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70008

By:

Bhaskar, Haresh;
Gidden, Zoe;
Virdi, Gurvir;
Kleinjan, Dirk‐Jan;
Rosser, Susan J.;
Gandhi, Sonia;
Regan, Lynne;
Horrocks, Mathew H.

Publication type:

Article

Chemical and temporal manipulation of early steps in protein assembly tunes the structure and intermolecular interactions of protein‐based materials.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.70000

By:

Italia, Valeria;
Jons, Amanda;
Kaparthi, Bhavika;
Faulk, Britt;
Maccarini, Marco;
Bertoncello, Paolo;
Meissner, Ken;
Martin, Donald K.;
Bondos, Sarah E.

Publication type:

Article

Investigation into the effect of phenylalanine gating on anaerobic haem breakdown using the energy landscape approach.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5243

By:

Keith, Alasdair D.;
Sawyer, Elizabeth B.;
Choy, Desmond C. Y.;
Cole, James L.;
Shang, Cheng;
Biggs, George S.;
Klein, Oskar James;
Brear, Paul D.;
Wales, David J.;
Barker, Paul D.

Publication type:

Article

Accelerated amyloid fibril formation at the interface of liquid–liquid phase‐separated droplets by depletion interactions.

Published in:

Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5163

By:

Yamaguchi, Keiichi;
Mima, Joji;
Nakajima, Kichitaro;
Sakuta, Hiroki;
Yoshikawa, Kenichi;
Goto, Yuji

Publication type:

Article

Cover Image.

Published in:: Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5042
Publication type:: Article

Issue information.

Published in:: Protein Science: A Publication of the Protein Society, 2025, v. 34, n. 2, p. 1, doi. 10.1002/pro.5041
Publication type:: Article

Works matching IS 09618368 AND DT 2025 AND VI 34 AND IP 2

NumSimEX: A method using EXX hydrogen exchange mass spectrometry to map the energetics of protein folding landscapes.

Conformational dynamics in specialized C<sub>2</sub>H<sub>2</sub> zinc finger domains enable zinc‐responsive gene repression in S. pombe.

Combining computational modeling and experimental library screening to affinity‐mature VEEV‐neutralizing antibody F5.

Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss‐of‐function and gain‐of‐function mutants.

GDFold2: A fast and parallelizable protein folding environment with freely defined objective functions.

Loop engineering of enzymes to control their immobilization and ultimately fabricate more efficient heterogeneous biocatalysts.

Computational and experimental mapping of the allosteric network of two manganese ABC transporters.

Cryo‐EM SPR structures of Salmonella typhimuriumArnC; the key enzyme in lipid‐A modification conferring polymyxin resistance.

Translation of the downstream ORF from bicistronic mRNAs by human cells: Impact of codon usage and splicing in the upstream ORF.

Hijacking of plasminogen by dengue virus: The kringle‐4 and ‐5 domains of plasminogen binds synergistically to the domain I of envelope protein.

Cripto‐1 acts as a molecular bridge linking nodal to ALK4 via distinct structural domains.

Citrullination at the N‐terminal region of MDM2 by the PADI4 enzyme.

The multifaceted role of XCL1 in health and disease.

AggNet: Advancing protein aggregation analysis through deep learning and protein language model.

AFFIPred: AlphaFold2 structure‐based Functional Impact Prediction of missense variations.

Human recombinant tyrosinase destabilization caused by the double mutation R217Q/R402Q.

LEA_4 motifs function alone and in conjunction with synergistic cosolutes to protect a labile enzyme during desiccation.

Insights into the flexibility of the domain‐linking loop in actinobacterial coproheme decarboxylase through structures and molecular dynamics simulations.

Methods for detecting, building, and improving tryptophan mannosylation in glycoprotein structures.

Ca<sup>X</sup>ML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features.

α‐N‐Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions.

Engineered protein G variants for multifunctional antibody‐based assemblies.

A novel method for expressing and purifying large quantities of functional and stable human voltage‐gated proton channel (hH<sub>v</sub>1).

A functional helix shuffled variant of the B domain of Staphylococcus aureus.

Super‐resolution imaging of proteins inside live mammalian cells with mLIVE‐PAINT.

Chemical and temporal manipulation of early steps in protein assembly tunes the structure and intermolecular interactions of protein‐based materials.

Investigation into the effect of phenylalanine gating on anaerobic haem breakdown using the energy landscape approach.

Accelerated amyloid fibril formation at the interface of liquid–liquid phase‐separated droplets by depletion interactions.

Cover Image.

Issue information.