Works matching IS 09618368 AND DT 2022 AND VI 31 AND IP 12

Results: 38

Issue information.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4111
Publication type:: Article

Investigating the allosteric response of the PICK1 PDZ domain to different ligands with all‐atom simulations.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4474

By:

Stevens, Amy O.;
Kazan, I. Can;
Ozkan, Banu;
He, Yi

Publication type:

Article

Snapshots of urea‐induced early structural changes and unfolding of an ankyrin repeat protein at atomic resolution.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4515

By:

Medur Gurushankar, Mukund Sudharsan;
Dalvi, Somavally;
Venkatraman, Prasanna

Publication type:

Article

Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4513

By:

Bhattacharjee, Rupam;
Udgaonkar, Jayant B.

Publication type:

Article

Phage‐assisted, active site‐directed ligand evolution of a potent and selective histone deacetylase 8 inhibitor.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4512

By:

Morse, Jared S.;
Sheng, Yan J.;
Hampton, Joshua Trae;
Sylvain, Lauralee D.;
Das, Sukant;
Alugubelli, Yugendar R.;
Chen, Peng‐Hsun Chase;
Yang, Kai S.;
Xu, Shiqing;
Fierke, Carol A.;
Liu, Wenshe Ray

Publication type:

Article

Quantifying the effects of lossy compression on energies calculated from molecular dynamics trajectories.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4511

By:

Roe, Daniel R.;
Brooks, Bernard R.

Publication type:

Article

The role of oligomerization in the optimization of cyclohexadienyl dehydratase conformational dynamics and catalytic activity.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4510

By:

East, Nicholas J.;
Clifton, Ben E.;
Jackson, Colin J.;
Kaczmarski, Joe A.

Publication type:

Article

Biophysical characterization of full‐length TAR DNA‐binding protein (TDP‐43) phase separation.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4509

By:

Staderini, Tommaso;
Bigi, Alessandra;
Mongiello, Daniele;
Cecchi, Cristina;
Chiti, Fabrizio

Publication type:

Article

Development of charybdotoxin Q18F variant as a selective peptide blocker of neuronal BK(α + β4) channel for the treatment of epileptic seizures.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4506

By:

Liu, Xinlian;
Tao, Jie;
Zhang, Shuzhang;
Lan, Wenxian;
Yao, Yu;
Wang, Chunxi;
Xue, Hongjuan;
Ji, Yonghua;
Li, Guoyi;
Cao, Chunyang

Publication type:

Article

Stability profile of vimentin rod domain.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4505

By:

Lilina, Anastasia V.;
Leekens, Simon;
Hashim, Hani M.;
Vermeire, Pieter‐Jan;
Harvey, Jeremy N.;
Strelkov, Sergei V.

Publication type:

Article

Design of a H2O2‐generating P450SPα fusion protein for high yield fatty acid conversion.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4501

By:

Giuriato, Daniele;
Correddu, Danilo;
Catucci, Gianluca;
Di Nardo, Giovanna;
Bolchi, Cristiano;
Pallavicini, Marco;
Gilardi, Gianfranco

Publication type:

Article

Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4500

By:

Weigert, Sebastian;
Perez‐Garcia, Pablo;
Gisdon, Florian J.;
Gagsteiger, Andreas;
Schweinshaut, Kristine;
Ullmann, G. Matthias;
Chow, Jennifer;
Streit, Wolfgang R.;
Höcker, Birte

Publication type:

Article

Computational modeling studies reveal the origin of the binding preference of 3‐(3,4‐di hydroisoquinolin‐2(1H)‐ylsulfonyl)benzoic acids for AKR1C3 over its isoforms.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4499

By:

Kong, Xiaotian;
Xing, Enming;
Wu, Sijin;
Zhuang, Tony;
Li, Pui‐Kai;
Li, Chunhua;
Cheng, Xiaolin

Publication type:

Article

Application of biophysical methods for improved protein production and characterization: A case study on an high‐temperature requirement A‐family bacterial protease.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4498

By:

Ronzetti, Michael;
Baljinnyam, Bolormaa;
Jalal, Ishrat;
Pal, Utpal;
Simeonov, Anton

Publication type:

Article

BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4497

By:

Clifford, Joakim Nøddeskov;
Høie, Magnus Haraldson;
Deleuran, Sebastian;
Peters, Bjoern;
Nielsen, Morten;
Marcatili, Paolo

Publication type:

Article

Rapid prediction and analysis of protein intrinsic disorder.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4496

By:

Dayhoff, Guy W.;
Uversky, Vladimir N.

Publication type:

Article

Secondary structure and stability of a gel‐forming tardigrade desiccation‐tolerance protein.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4495

By:

Eicher, Jonathan E.;
Brom, Julia A.;
Wang, Shikun;
Sheiko, Sergei S.;
Atkin, Joanna M.;
Pielak, Gary J.

Publication type:

Article

Cover Image.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4493
Publication type:: Article

Issue information.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4111
Publication type:: Article

A backbone‐dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4491

By:

Mortensen, Jennifer C.;
Damjanovic, Jovan;
Miao, Jiayuan;
Hui, Tiffani;
Lin, Yu‐Shan

Publication type:

Article

Inline small‐angle X‐ray scattering‐coupled chromatography under extreme hydrostatic pressure.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4489

By:

Miller, Robert C.;
Cummings, Cody;
Huang, Qingqiu;
Ando, Nozomi;
Gillilan, Richard E.

Publication type:

Article

Selection of a PD‐1 blocking antibody from a novel fully human phage display library.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4486

By:

Peissert, Frederik;
Plüss, Louis;
Giudice, Anna Maria;
Ongaro, Tiziano;
Villa, Alessandra;
Elsayed, Abdullah;
Nadal, Lisa;
Dakhel Plaza, Sheila;
Scietti, Luigi;
Puca, Emanuele;
De Luca, Roberto;
Forneris, Federico;
Neri, Dario

Publication type:

Article

Signal peptide stabilizes folding and inhibits misfolding of serum amyloid A.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4485

By:

Wu, Jin‐Lin;
Chen, Yun‐Ru

Publication type:

Article

GeoPacker: A novel deep learning framework for protein side‐chain modeling.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4484

By:

Liu, Jiale;
Zhang, Changsheng;
Lai, Luhua

Publication type:

Article

Analysis of insertions and extensions in the functional evolution of the ribonucleotide reductase family.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4483

By:

Burnim, Audrey A.;
Xu, Da;
Spence, Matthew A.;
Jackson, Colin J.;
Ando, Nozomi

Publication type:

Article

Probing the origin of prion protein misfolding via reconstruction of ancestral proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4477

By:

Cortez, Leonardo M.;
Morrison, Anneliese J.;
Garen, Craig R.;
Patterson, Sawyer;
Uyesugi, Toshi;
Petrosyan, Rafayel;
Sekar, Rohith Vedhthaanth;
Harms, Michael J.;
Woodside, Michael T.;
Sim, Valerie L.

Publication type:

Article

Dockground resource for protein recognition studies.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4481

By:

Collins, Keeley W.;
Copeland, Matthew M.;
Kotthoff, Ian;
Singh, Amar;
Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

Learning deep representations of enzyme thermal adaptation.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4480

By:

Li, Gang;
Buric, Filip;
Zrimec, Jan;
Viknander, Sandra;
Nielsen, Jens;
Zelezniak, Aleksej;
Engqvist, Martin K. M.

Publication type:

Article

Computed cancer interactome explains the effects of somatic mutations in cancers.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4479

By:

Zhang, Jing;
Pei, Jimin;
Durham, Jesse;
Bos, Tasia;
Cong, Qian

Publication type:

Article

Fast peptide exchange on major histocompatibility complex class I molecules by acidic stabilization of a peptide‐empty intermediate.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4478

By:

Saikia, Ankur;
Hadeler, Andries;
Prasad, Pranathi;
Zacharias, Martin;
Springer, Sebastian

Publication type:

Article

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4482

By:

Burley, Stephen K.;
Bhikadiya, Charmi;
Bi, Chunxiao;
Bittrich, Sebastian;
Chao, Henry;
Chen, Li;
Craig, Paul A.;
Crichlow, Gregg V.;
Dalenberg, Kenneth;
Duarte, Jose M.;
Dutta, Shuchismita;
Fayazi, Maryam;
Feng, Zukang;
Flatt, Justin W.;
Ganesan, Sai J.;
Ghosh, Sutapa;
Goodsell, David S.;
Green, Rachel Kramer;
Guranovic, Vladimir;
Henry, Jeremy

Publication type:

Article

PDBsum1: A standalone program for generating PDBsum analyses.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4473

By:

Laskowski, Roman A.

Publication type:

Article

ArtiaX: An electron tomography toolbox for the interactive handling of sub‐tomograms in UCSF ChimeraX.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4472

By:

Ermel, Utz H.;
Arghittu, Serena M.;
Frangakis, Achilleas S.

Publication type:

Article

Copper coordination states affect the flexibility of copper Metallochaperone Atox1: Insights from molecular dynamics simulations.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4464

By:

Schwartz, Renana;
Ruthstein, Sharon;
Major, Dan Thomas

Publication type:

Article

An evolutionary history of the CoA‐binding protein Nat/Ivy.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4463

By:

Longo, Liam M.;
Hirai, Hayate;
McGlynn, Shawn Erin

Publication type:

Article

BindWeb: A web server for ligand binding residue and pocket prediction from protein structures.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4462

By:

Xia, Ying;
Xia, Chunqiu;
Pan, Xiaoyong;
Shen, Hong‐Bin

Publication type:

Article

Allosteric links between the hydrophilic N‐terminus and transmembrane core of human Na+/H+ antiporter NHA2.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4460

By:

Velázquez, Diego;
Průša, Vojtěch;
Masrati, Gal;
Yariv, Elon;
Sychrova, Hana;
Ben‐Tal, Nir;
Zimmermannova, Olga

Publication type:

Article

Approach to the specificity and selectivity between D2 and D3 receptors by mutagenesis and binding experiments part I: Expression and characterization of D2 and D3 receptor mutants.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4459

By:

Legros, Céline;
Rojas, Anne;
Dupré, Clémence;
Brasseur, Chantal;
Riest‐Fery, Isabelle;
Muller, Olivier;
Ortuno, Jean‐Claude;
Nosjean, Olivier;
Guenin, Sophie‐Pénélope;
Ferry, Gilles;
Boutin, Jean A.

Publication type:

Article

Works matching IS 09618368 AND DT 2022 AND VI 31 AND IP 12

Issue information.

Investigating the allosteric response of the PICK1 PDZ domain to different ligands with all‐atom simulations.

Snapshots of urea‐induced early structural changes and unfolding of an ankyrin repeat protein at atomic resolution.

Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein.

Phage‐assisted, active site‐directed ligand evolution of a potent and selective histone deacetylase 8 inhibitor.

Quantifying the effects of lossy compression on energies calculated from molecular dynamics trajectories.

The role of oligomerization in the optimization of cyclohexadienyl dehydratase conformational dynamics and catalytic activity.

Biophysical characterization of full‐length TAR DNA‐binding protein (TDP‐43) phase separation.

Development of charybdotoxin Q18F variant as a selective peptide blocker of neuronal BK(α + β4) channel for the treatment of epileptic seizures.

Stability profile of vimentin rod domain.

Design of a H<sub>2</sub>O<sub>2</sub>‐generating P450<sub>SPα</sub> fusion protein for high yield fatty acid conversion.

Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.

Computational modeling studies reveal the origin of the binding preference of 3‐(3,4‐di hydroisoquinolin‐2(1H)‐ylsulfonyl)benzoic acids for AKR1C3 over its isoforms.

Application of biophysical methods for improved protein production and characterization: A case study on an high‐temperature requirement A‐family bacterial protease.

BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models.

Rapid prediction and analysis of protein intrinsic disorder.

Secondary structure and stability of a gel‐forming tardigrade desiccation‐tolerance protein.

Cover Image.

Issue information.

A backbone‐dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations.

Inline small‐angle X‐ray scattering‐coupled chromatography under extreme hydrostatic pressure.

Selection of a PD‐1 blocking antibody from a novel fully human phage display library.

Signal peptide stabilizes folding and inhibits misfolding of serum amyloid A.

GeoPacker: A novel deep learning framework for protein side‐chain modeling.

Analysis of insertions and extensions in the functional evolution of the ribonucleotide reductase family.

Probing the origin of prion protein misfolding via reconstruction of ancestral proteins.

Dockground resource for protein recognition studies.

Learning deep representations of enzyme thermal adaptation.

Computed cancer interactome explains the effects of somatic mutations in cancers.

Fast peptide exchange on major histocompatibility complex class I molecules by acidic stabilization of a peptide‐empty intermediate.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.

PDBsum1: A standalone program for generating PDBsum analyses.

ArtiaX: An electron tomography toolbox for the interactive handling of sub‐tomograms in UCSF ChimeraX.

Copper coordination states affect the flexibility of copper Metallochaperone Atox1: Insights from molecular dynamics simulations.

An evolutionary history of the CoA‐binding protein Nat/Ivy.

BindWeb: A web server for ligand binding residue and pocket prediction from protein structures.

Allosteric links between the hydrophilic N‐terminus and transmembrane core of human Na<sup>+</sup>/H<sup>+</sup> antiporter NHA2.

Approach to the specificity and selectivity between D2 and D3 receptors by mutagenesis and binding experiments part I: Expression and characterization of D2 and D3 receptor mutants.