Works matching IS 09618368 AND DT 2022 AND VI 31 AND IP 1

Results: 28

Cover Image.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 1, doi. 10.1002/pro.4254
Publication type:: Article

Tools 2022: A compilation of tools for protein science.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 5, doi. 10.1002/pro.4243
Publication type:: Article

Analysis of protein–ligand interactions from titrations and nuclear magnetic resonance relaxation dispersions.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 301, doi. 10.1002/pro.4240

By:

Björklund, Emil;
du Rietz, Anna;
Lundström, Patrik

Publication type:

Article

The importance of residue‐level filtering and the Top2018 best‐parts dataset of high‐quality protein residues.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 290, doi. 10.1002/pro.4239

By:

Williams, Christopher J.;
Richardson, David C.;
Richardson, Jane S.

Publication type:

Article

PDBsum extras: SARS‐CoV‐2 and AlphaFold models.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 283, doi. 10.1002/pro.4238

By:

Laskowski, Roman A.;
Thornton, Janet M.

Publication type:

Article

EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 269, doi. 10.1002/pro.4237

By:

Konarev, Petr V.;
Graewert, Melissa A.;
Jeffries, Cy M.;
Fukuda, Masakazu;
Cheremnykh, Taisiia A.;
Volkov, Vladimir V.;
Svergun, Dmitri I.

Publication type:

Article

PANTHER: Making genome‐scale phylogenetics accessible to all.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 8, doi. 10.1002/pro.4218

By:

Thomas, Paul D.;
Ebert, Dustin;
Muruganujan, Anushya;
Mushayahama, Tremayne;
Albou, Laurent‐Philippe;
Mi, Huaiyu

Publication type:

Article

SAXSMoW 3.0: New advances in the determination of the molecular weight of proteins in dilute solutions from SAXS intensity data on a relative scale.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 251, doi. 10.1002/pro.4227

By:

de Oliveira Neto, Mario;
de Freitas Fernandes, Adriano;
Piiadov, Vassili;
Craievich, Aldo Felix;
de Araújo, Evandro Ares;
Polikarpov, Igor

Publication type:

Article

DIALS as a toolkit.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 232, doi. 10.1002/pro.4224

By:

Winter, Graeme;
Beilsten‐Edmands, James;
Devenish, Nicholas;
Gerstel, Markus;
Gildea, Richard J.;
McDonagh, David;
Pascal, Elena;
Waterman, David G.;
Williams, Benjamin H.;
Evans, Gwyndaf

Publication type:

Article

CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 221, doi. 10.1002/pro.4223

By:

Wright, Gabriel;
Rodriguez, Anabel;
Li, Jun;
Milenkovic, Tijana;
Emrich, Scott J.;
Clark, Patricia L.

Publication type:

Article

Spatial arrangement of proteins in planar and curved membranes by PPM 3.0.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 209, doi. 10.1002/pro.4219

By:

Lomize, Andrei L.;
Todd, Spencer C.;
Pogozheva, Irina D.

Publication type:

Article

Optimal structure determination from sub‐optimal diffraction data.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 259, doi. 10.1002/pro.4235

By:

Minor, Wladek;
Cymborowski, Marcin;
Borek, Dominika;
Cooper, David R.;
Chruszcz, Maksymilian;
Otwinowski, Zbyszek

Publication type:

Article

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 187, doi. 10.1002/pro.4213

By:

Burley, Stephen K.;
Bhikadiya, Charmi;
Bi, Chunxiao;
Bittrich, Sebastian;
Chen, Li;
Crichlow, Gregg V.;
Duarte, Jose M.;
Dutta, Shuchismita;
Fayazi, Maryam;
Feng, Zukang;
Flatt, Justin W.;
Ganesan, Sai J.;
Goodsell, David S.;
Ghosh, Sutapa;
Kramer Green, Rachel;
Guranovic, Vladimir;
Henry, Jeremy;
Hudson, Brian P.;
Lawson, Catherine L.;
Liang, Yuhe

Publication type:

Article

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 173, doi. 10.1002/pro.4211

By:

Bekker, Gert‐Jan;
Yokochi, Masashi;
Suzuki, Hirofumi;
Ikegawa, Yasuyo;
Iwata, Takeshi;
Kudou, Takahiro;
Yura, Kei;
Fujiwara, Toshimichi;
Kawabata, Takeshi;
Kurisu, Genji

Publication type:

Article

SMOG 2 and OpenSMOG: Extending the limits of structure‐based models.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 158, doi. 10.1002/pro.4209

By:

de Oliveira, Antonio B.;
Contessoto, Vinícius G.;
Hassan, Asem;
Byju, Sandra;
Wang, Ailun;
Wang, Yang;
Dodero‐Rojas, Esteban;
Mohanty, Udayan;
Noel, Jeffrey K.;
Onuchic, Jose N.;
Whitford, Paul C.

Publication type:

Article

Match_Motif: A rapid computational tool to assist in protein–protein interaction design.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 147, doi. 10.1002/pro.4208
Publication type:: Article

Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 141, doi. 10.1002/pro.4205

By:

Olsen, Tobias H.;
Boyles, Fergus;
Deane, Charlotte M.

Publication type:

Article

PDB‐101: Educational resources supporting molecular explorations through biology and medicine.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 129, doi. 10.1002/pro.4200

By:

Zardecki, Christine;
Dutta, Shuchismita;
Goodsell, David S.;
Lowe, Robert;
Voigt, Maria;
Burley, Stephen K.

Publication type:

Article

PANNZER—A practical tool for protein function prediction.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 118, doi. 10.1002/pro.4193

By:

Törönen, Petri;
Holm, Liisa

Publication type:

Article

Python‐based Helix Indexer: A graphical user interface program for finding symmetry of helical assembly through Fourier–Bessel indexing of electron microscopic data.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 107, doi. 10.1002/pro.4186
Publication type:: Article

The evolution of the antimicrobial peptide database over 18 years: Milestones and new features.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 92, doi. 10.1002/pro.4185

By:

Wang, Guangshun;
Zietz, C. Michael;
Mudgapalli, Ashok;
Wang, Shuona;
Wang, Zhe

Publication type:

Article

Compendium of causative genes and their encoded proteins for common monogenic disorders.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 75, doi. 10.1002/pro.4183

By:

Apgar, Tucker L.;
Sanders, Charles R.

Publication type:

Article

nightshift: A Python program for plotting simulated NMR spectra from assigned chemical shifts from the Biological Magnetic Resonance Data Bank.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 63, doi. 10.1002/pro.4181

By:

Fucci, Ian J.;
Byrd, R. Andrew

Publication type:

Article

SynWiki: Functional annotation of the first artificial organism Mycoplasma mycoidesJCVI‐syn3A.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 54, doi. 10.1002/pro.4179

By:

Pedreira, Tiago;
Elfmann, Christoph;
Singh, Neil;
Stülke, Jörg

Publication type:

Article

KEGG mapping tools for uncovering hidden features in biological data.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 47, doi. 10.1002/pro.4172

By:

Kanehisa, Minoru;
Sato, Yoko;
Kawashima, Masayuki

Publication type:

Article

DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 37, doi. 10.1002/pro.4153

By:

Miles, Andrew J.;
Ramalli, Sergio G.;
Wallace, B. A.

Publication type:

Article

Issue information.

Published in:: Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 1, doi. 10.1002/pro.4111
Publication type:: Article

DbStRiPs: Database of structural repeats in proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 23, doi. 10.1002/pro.4052

By:

Chakrabarty, Broto;
Parekh, Nita

Publication type:

Article