Works matching IS 09618368 AND DT 2020 AND VI 29 AND IP 1

Results: 31

Tools 2020: A compilation of tools for protein science.

Published in:: Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 5, doi. 10.1002/pro.3799
Publication type:: Article

Facilities that make the PDB data collection more powerful.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 330, doi. 10.1002/pro.3788

By:

Lange, Joanna;
Baakman, Coos;
Pistorius, Arthur;
Krieger, Elmar;
Hooft, Rob;
Joosten, Robbie P.;
Vriend, Gert

Publication type:

Article

New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink "waters," and NGL Viewer to recapture online 3D graphics.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 315, doi. 10.1002/pro.3786

By:

Prisant, Michael G.;
Williams, Christopher J.;
Chen, Vincent B.;
Richardson, Jane S.;
Richardson, David C.

Publication type:

Article

Temperature dependence of NMR chemical shifts: Tracking and statistical analysis.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 306, doi. 10.1002/pro.3785

By:

Trainor, Kyle;
Palumbo, Jeffrey A.;
MacKenzie, Duncan W. S.;
Meiering, Elizabeth M.

Publication type:

Article

Cross‐docking benchmark for automated pose and ranking prediction of ligand binding.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 298, doi. 10.1002/pro.3784

By:

Wierbowski, Shayne D.;
Wingert, Bentley M.;
Zheng, Jim;
Camacho, Carlos J.

Publication type:

Article

The Dundee Resource for Sequence Analysis and Structure Prediction.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 277, doi. 10.1002/pro.3783

By:

MacGowan, Stuart A.;
Madeira, Fábio;
Britto‐Borges, Thiago;
Warowny, Mateusz;
Drozdetskiy, Alexey;
Procter, James B.;
Barton, Geoffrey J.

Publication type:

Article

Shortcuts for faster image creation in PyMOL.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 268, doi. 10.1002/pro.3781

By:

Mooers, Blaine H. M.

Publication type:

Article

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 258, doi. 10.1002/pro.3779

By:

Ben Chorin, Adi;
Masrati, Gal;
Kessel, Amit;
Narunsky, Aya;
Sprinzak, Josef;
Lahav, Shlomtzion;
Ashkenazy, Haim;
Ben‐Tal, Nir

Publication type:

Article

Prediction of impacts of mutations on protein structure and interactions: SDM, a statistical approach, and mCSM, using machine learning.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 247, doi. 10.1002/pro.3774

By:

Pandurangan, Arun Prasad;
Blundell, Tom L.

Publication type:

Article

Visualizing biomolecular electrostatics in virtual reality with UnityMol‐APBS.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 237, doi. 10.1002/pro.3773

By:

Laureanti, Joseph;
Brandi, Juan;
Offor, Elvis;
Engel, David;
Rallo, Robert;
Ginovska, Bojana;
Martinez, Xavier;
Baaden, Marc;
Baker, Nathan A.

Publication type:

Article

Hybrid Electron Microscopy Normal Mode Analysis with Scipion.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 223, doi. 10.1002/pro.3772

By:

Harastani, Mohamad;
Sorzano, Carlos Oscar S.;
Jonić, Slavica

Publication type:

Article

An engineered ultra‐high affinity Fab‐Protein G pair enables a modular antibody platform with multifunctional capability.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 141, doi. 10.1002/pro.3751

By:

Slezak, Tomasz;
Bailey, Lucas J.;
Jaskolowski, Mateusz;
Nahotko, Dominik A.;
Filippova, Ekaterina V.;
Davydova, Elena K.;
Kossiakoff, Anthony A.

Publication type:

Article

NAGbinder: An approach for identifying N‐acetylglucosamine interacting residues of a protein from its primary sequence.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 201, doi. 10.1002/pro.3761

By:

Patiyal, Sumeet;
Agrawal, Piyush;
Kumar, Vinod;
Dhall, Anjali;
Kumar, Rajesh;
Mishra, Gaurav;
Raghava, Gajendra P.S.

Publication type:

Article

DISOselect: Disorder predictor selection at the protein level.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 184, doi. 10.1002/pro.3756

By:

Katuwawala, Akila;
Oldfield, Christopher J.;
Kurgan, Lukasz

Publication type:

Article

IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions—Insights from transcription factors.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 169, doi. 10.1002/pro.3754

By:

Millard, Peter S.;
Bugge, Katrine;
Marabini, Riccardo;
Boomsma, Wouter;
Burow, Meike;
Kragelund, Birthe B.

Publication type:

Article

Peppy: A virtual reality environment for exploring the principles of polypeptide structure.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 157, doi. 10.1002/pro.3752

By:

Doak, David G.;
Denyer, Gareth S.;
Gerrard, Juliet A.;
Mackay, Joel P.;
Allison, Jane R.

Publication type:

Article

Flexible docking of peptides to proteins using CABS‐dock.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 211, doi. 10.1002/pro.3771

By:

Kurcinski, Mateusz;
Badaczewska‐Dawid, Aleksandra;
Kolinski, Michal;
Kolinski, Andrzej;
Kmiecik, Sebastian

Publication type:

Article

DALI and the persistence of protein shape.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 128, doi. 10.1002/pro.3749

By:

Holm, Liisa

Publication type:

Article

Molstack: A platform for interactive presentations of electron density and cryo‐EM maps and their interpretations.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 120, doi. 10.1002/pro.3747

By:

Porebski, Przemyslaw J.;
Bokota, Grzegorz;
Venkataramany, Barat S.;
Minor, Wladek

Publication type:

Article

VarSite: Disease variants and protein structure.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 111, doi. 10.1002/pro.3746

By:

Laskowski, Roman A.;
Stephenson, James D.;
Sillitoe, Ian;
Orengo, Christine A.;
Thornton, Janet M.

Publication type:

Article

A three‐dimensional potential of mean force to improve backbone and sidechain hydrogen bond geometry in Xplor‐NIH protein structure determination.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 100, doi. 10.1002/pro.3745

By:

Schwieters, Charles D.;
Bermejo, Guillermo A.;
Clore, G. Marius

Publication type:

Article

Cryo‐EM map interpretation and protein model‐building using iterative map segmentation.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 87, doi. 10.1002/pro.3740

By:

Terwilliger, Thomas C.;
Adams, Paul D.;
Afonine, Pavel V.;
Sobolev, Oleg V.

Publication type:

Article

Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 76, doi. 10.1002/pro.3732

By:

Lee, Ji Young;
Krieger, James M.;
Li, Hongchun;
Bahar, Ivet

Publication type:

Article

SASBDB: Towards an automatically curated and validated repository for biological scattering data.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 66, doi. 10.1002/pro.3731

By:

Kikhney, Alexey G.;
Borges, Clemente R.;
Molodenskiy, Dmitry S.;
Jeffries, Cy M.;
Svergun, Dmitri I.

Publication type:

Article

RCSB Protein Data Bank: Enabling biomedical research and drug discovery.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 52, doi. 10.1002/pro.3730

By:

Goodsell, David S.;
Zardecki, Christine;
Di Costanzo, Luigi;
Duarte, Jose M.;
Hudson, Brian P.;
Persikova, Irina;
Segura, Joan;
Shao, Chenghua;
Voigt, Maria;
Westbrook, John D.;
Young, Jasmine Y.;
Burley, Stephen K.

Publication type:

Article

Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 43, doi. 10.1002/pro.3721

By:

Ford, Alexander S.;
Weitzner, Brian D.;
Bahl, Christopher D.

Publication type:

Article

Collection of antimicrobial peptides database and its derivatives: Applications and beyond.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 36, doi. 10.1002/pro.3714

By:

Waghu, Faiza Hanif;
Idicula‐Thomas, Susan

Publication type:

Article

KEGG Mapper for inferring cellular functions from protein sequences.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 28, doi. 10.1002/pro.3711

By:

Kanehisa, Minoru;
Sato, Yoko

Publication type:

Article

SimpleDSFviewer: A tool to analyze and view differential scanning fluorimetry data for characterizing protein thermal stability and interactions.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 19, doi. 10.1002/pro.3703

By:

Sun, Changye;
Li, Yong;
Yates, Edwin A.;
Fernig, David G.

Publication type:

Article

The antimicrobial peptide database provides a platform for decoding the design principles of naturally occurring antimicrobial peptides.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 8, doi. 10.1002/pro.3702

By:

Wang, Guangshun

Publication type:

Article

Issue information.

Published in:: Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 1, doi. 10.1002/pro.3649
Publication type:: Article