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Issue Information.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 1, doi. 10.1002/pro.3543
Publication type:
Article
Award Winners and Abstracts of the 32nd Annual Symposium of The Protein Society; Boston, MA, July 9–12, 2018.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 11, doi. 10.1002/pro.3513
Publication type:
Article
Clustal Omega for making accurate alignments of many protein sequences.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 135, doi. 10.1002/pro.3290
By:
- Sievers, Fabian;
- Higgins, Desmond G.
Publication type:
Article
Prediction of nearest neighbor effects on backbone torsion angles and NMR scalar coupling constants in disordered proteins.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 146, doi. 10.1002/pro.3292
By:
- Shen, Yang;
- Roche, Julien;
- Grishaev, Alexander;
- Bax, Ad
Publication type:
Article
Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 159, doi. 10.1002/pro.3293
By:
- Heymann, J. Bernard
Publication type:
Article
Xplor-NIH for molecular structure determination from NMR and other data sources.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 26, doi. 10.1002/pro.3248
By:
- Schwieters, Charles D.;
- Bermejo, Guillermo A.;
- Clore, G. Marius
Publication type:
Article
Dockground: A comprehensive data resource for modeling of protein complexes.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 172, doi. 10.1002/pro.3295
By:
- Kundrotas, Petras J.;
- Anishchenko, Ivan;
- Dauzhenka, Taras;
- Kotthoff, Ian;
- Mnevets, Daniil;
- Copeland, Matthew M.;
- Vakser, Ilya A.
Publication type:
Article
Automating tasks in protein structure determination with the clipper python module.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 207, doi. 10.1002/pro.3299
By:
- McNicholas, Stuart;
- Croll, Tristan;
- Burnley, Tom;
- Palmer, Colin M.;
- Hoh, Soon Wen;
- Jenkins, Huw T.;
- Dodson, Eleanor;
- Cowtan, Kevin;
- Agirre, Jon
Publication type:
Article
Interactive comparison and remediation of collections of macromolecular structures.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 182, doi. 10.1002/pro.3296
By:
- Moriarty, Nigel W.;
- Liebschner, Dorothee;
- Klei, Herbert E.;
- Echols, Nathaniel;
- Afonine, Pavel V.;
- Headd, Jeffrey J.;
- Poon, Billy K.;
- Adams, Paul D.
Publication type:
Article
The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 195, doi. 10.1002/pro.3297
By:
- Salvatore, M.;
- Shu, N.;
- Elofsson, A.
Publication type:
Article
Forty years of collaborative computational crystallography.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 202, doi. 10.1002/pro.3298
By:
- Agirre, Jon;
- Dodson, Eleanor
Publication type:
Article
Scipion web tools: Easy to use cryo-EM image processing over the web.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 269, doi. 10.1002/pro.3315
By:
- Conesa Mingo, Pablo;
- Gutierrez, José;
- Quintana, Adrián;
- de la Rosa Trevín, José Miguel;
- Zaldívar‐Peraza, Airén;
- Cuenca Alba, Jesús;
- Kazemi, Mohsen;
- Vargas, Javier;
- del Cano, Laura;
- Segura, Joan;
- Sorzano, Carlos Oscar S.;
- Carazo, Jose María
Publication type:
Article
MolProbity: More and better reference data for improved all-atom structure validation.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 293, doi. 10.1002/pro.3330
By:
- Williams, Christopher J.;
- Headd, Jeffrey J.;
- Moriarty, Nigel W.;
- Prisant, Michael G.;
- Videau, Lizbeth L.;
- Deis, Lindsay N.;
- Verma, Vishal;
- Keedy, Daniel A.;
- Hintze, Bradley J.;
- Chen, Vincent B.;
- Jain, Swati;
- Lewis, Steven M.;
- Arendall, III, W. Bryan;
- Snoeyink, Jack;
- Adams, Paul D.;
- Lovell, Simon C.;
- Richardson, Jane S.;
- Richardson, David C.
Publication type:
Article
Ensemblator v3: Robust atom-level comparative analyses and classification of protein structure ensembles.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 41, doi. 10.1002/pro.3249
By:
- Brereton, Andrew E.;
- Karplus, P. Andrew
Publication type:
Article
Integrative structure modeling with the Integrative Modeling Platform.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 245, doi. 10.1002/pro.3311
By:
- Webb, Benjamin;
- Viswanath, Shruthi;
- Bonomi, Massimiliano;
- Pellarin, Riccardo;
- Greenberg, Charles H.;
- Saltzberg, Daniel;
- Sali, Andrej
Publication type:
Article
Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE).
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 259, doi. 10.1002/pro.3313
By:
- Moretti, Rocco;
- Lyskov, Sergey;
- Das, Rhiju;
- Meiler, Jens;
- Gray, Jeffrey J.
Publication type:
Article
MMM: A toolbox for integrative structure modeling.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 76, doi. 10.1002/pro.3269
By:
- Jeschke, Gunnar
Publication type:
Article
Single-particle cryo-EM-Improved ab initio 3D reconstruction with SIMPLE/PRIME.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 51, doi. 10.1002/pro.3266
By:
- Reboul, Cyril F.;
- Eager, Michael;
- Elmlund, Dominika;
- Elmlund, Hans
Publication type:
Article
Visualizing correlated motion with HDBSCAN clustering.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 62, doi. 10.1002/pro.3268
By:
- Melvin, Ryan L.;
- Xiao, Jiajie;
- Godwin, Ryan C.;
- Berenhaut, Kenneth S.;
- Salsbury, Jr., Freddie R.
Publication type:
Article
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 316, doi. 10.1002/pro.3331
By:
- Burley, Stephen K.;
- Berman, Helen M.;
- Christie, Cole;
- Duarte, Jose M.;
- Feng, Zukang;
- Westbrook, John;
- Young, Jasmine;
- Zardecki, Christine
Publication type:
Article
%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 356, doi. 10.1002/pro.3336
By:
- Rodriguez, Anabel;
- Wright, Gabriel;
- Emrich, Scott;
- Clark, Patricia L.
Publication type:
Article
Prediction of protein disorder based on IUPred.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 331, doi. 10.1002/pro.3334
By:
- Dosztányi, Zsuzsanna
Publication type:
Article
Computational design of membrane proteins using RosettaMembrane.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 341, doi. 10.1002/pro.3335
By:
- Duran, Amanda M.;
- Meiler, Jens
Publication type:
Article
PDBsum: Structural summaries of PDB entries.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 129, doi. 10.1002/pro.3289
By:
- Laskowski, Roman A.;
- Jabłońska, Jagoda;
- Pravda, Lukáš;
- Vařeková, Radka Svobodová;
- Thornton, Janet M.
Publication type:
Article
Improvements to the APBS biomolecular solvation software suite.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 112, doi. 10.1002/pro.3280
By:
- Jurrus, Elizabeth;
- Engel, Dave;
- Star, Keith;
- Monson, Kyle;
- Brandi, Juan;
- Felberg, Lisa E.;
- Brookes, David H.;
- Wilson, Leighton;
- Chen, Jiahui;
- Liles, Karina;
- Chun, Minju;
- Li, Peter;
- Gohara, David W.;
- Dolinsky, Todd;
- Konecny, Robert;
- Koes, David R.;
- Nielsen, Jens Erik;
- Head‐Gordon, Teresa;
- Geng, Weihua;
- Krasny, Robert
Publication type:
Article
Tools for protein science.
Published in:
2018
By:
- Matthews, Brian
Publication type:
Editorial
Anchor Query: Rapid online virtual screening for small-molecule protein-protein interaction inhibitors.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 229, doi. 10.1002/pro.3303
By:
- Koes, David R.;
- Dömling, Alexander;
- Camacho, Carlos J.
Publication type:
Article
UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 14, doi. 10.1002/pro.3235
By:
- Goddard, Thomas D.;
- Huang, Conrad C.;
- Meng, Elaine C.;
- Pettersen, Eric F.;
- Couch, Gregory S.;
- Morris, John H.;
- Ferrin, Thomas E.
Publication type:
Article
Estimate your dose: RADDOSE-3D.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 217, doi. 10.1002/pro.3302
By:
- Bury, Charles S.;
- Brooks‐Bartlett, Jonathan C.;
- Walsh, Steven P.;
- Garman, Elspeth F.
Publication type:
Article
The human protein atlas: A spatial map of the human proteome.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 233, doi. 10.1002/pro.3307
By:
- Thul, Peter J.;
- Lindskog, Cecilia
Publication type:
Article
Issue information.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 1, doi. 10.1002/pro.3251
Publication type:
Article
PixelDB: Protein-peptide complexes annotated with structural conservation of the peptide binding mode.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 276, doi. 10.1002/pro.3320
By:
- Frappier, Vincent;
- Duran, Madeleine;
- Keating, Amy E.
Publication type:
Article
OPUS-CSF: A C-atom-based scoring function for ranking protein structural models.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 286, doi. 10.1002/pro.3327
By:
- Xu, Gang;
- Ma, Tianqi;
- Zang, Tianwu;
- Wang, Qinghua;
- Ma, Jianpeng
Publication type:
Article
DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web-based tool for identifying protein nearest neighbors using circular dichroism spectroscopy.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 10, doi. 10.1002/pro.3207
By:
- Whitmore, Lee;
- Mavridis, Lazaros;
- Wallace, B. A.;
- Janes, Robert W.
Publication type:
Article
Molstack-Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 86, doi. 10.1002/pro.3272
By:
- Porebski, Przemyslaw J.;
- Sroka, Piotr;
- Zheng, Heping;
- Cooper, David R.;
- Minor, Wladek
Publication type:
Article
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 95, doi. 10.1002/pro.3273
By:
- Kinjo, Akira R.;
- Bekker, Gert‐Jan;
- Wako, Hiroshi;
- Endo, Shigeru;
- Tsuchiya, Yuko;
- Sato, Hiromu;
- Nishi, Hafumi;
- Kinoshita, Kengo;
- Suzuki, Hirofumi;
- Kawabata, Takeshi;
- Yokochi, Masashi;
- Iwata, Takeshi;
- Kobayashi, Naohiro;
- Fujiwara, Toshimichi;
- Kurisu, Genji;
- Nakamura, Haruki
Publication type:
Article
C CBuilder 2.0: Powerful and accessible coiled-coil modeling.
Published in:
Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 103, doi. 10.1002/pro.3279
By:
- Wood, Christopher W.;
- Woolfson, Derek N.
Publication type:
Article

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