Works matching IS 08873585 AND DT 2021 AND VI 89 AND IP 12

Results: 33

Cover Image, Volume 89, Issue 12.

Published in:: Proteins, 2021, v. 89, n. 12, p. C4, doi. 10.1002/prot.25948
Publication type:: Article

Applying and improving AlphaFold at CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1711, doi. 10.1002/prot.26257

By:

Jumper, John;
Evans, Richard;
Pritzel, Alexander;
Green, Tim;
Figurnov, Michael;
Ronneberger, Olaf;
Tunyasuvunakool, Kathryn;
Bates, Russ;
Žídek, Augustin;
Potapenko, Anna;
Bridgland, Alex;
Meyer, Clemens;
Kohl, Simon A. A.;
Ballard, Andrew J.;
Cowie, Andrew;
Romera‐Paredes, Bernardino;
Nikolov, Stanislav;
Jain, Rishub;
Adler, Jonas;
Back, Trevor

Publication type:

Article

Assessing the accuracy of contact and distance predictions in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1888, doi. 10.1002/prot.26248

By:

Ruiz‐Serra, Victoria;
Pontes, Camila;
Milanetti, Edoardo;
Kryshtafovych, Andriy;
Lepore, Rosalba;
Valencia, Alfonso

Publication type:

Article

Target highlights in CASP14: Analysis of models by structure providers.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1647, doi. 10.1002/prot.26247

By:

Alexander, Leila T.;
Lepore, Rosalba;
Kryshtafovych, Andriy;
Adamopoulos, Athanassios;
Alahuhta, Markus;
Arvin, Ann M.;
Bomble, Yannick J.;
Böttcher, Bettina;
Breyton, Cécile;
Chiarini, Valerio;
Chinnam, Naga babu;
Chiu, Wah;
Fidelis, Krzysztof;
Grinter, Rhys;
Gupta, Gagan D.;
Hartmann, Marcus D.;
Hayes, Christopher S.;
Heidebrecht, Tatjana;
Ilari, Andrea;
Joachimiak, Andrzej

Publication type:

Article

Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1959, doi. 10.1002/prot.26246

By:

Huang, Yuanpeng Janet;
Zhang, Ning;
Bersch, Beate;
Fidelis, Krzysztof;
Inouye, Masayori;
Ishida, Yojiro;
Kryshtafovych, Andriy;
Kobayashi, Naohiro;
Kuroda, Yutaka;
Liu, Gaohua;
LiWang, Andy;
Swapna, G.V.T;
Wu, Nan;
Yamazaki, Toshio;
Montelione, Gaetano T.

Publication type:

Article

Critical assessment of methods of protein structure prediction (CASP)—Round XIV.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1607, doi. 10.1002/prot.26237

By:

Kryshtafovych, Andriy;
Schwede, Torsten;
Topf, Maya;
Fidelis, Krzysztof;
Moult, John

Publication type:

Article

Protein sequence‐to‐structure learning: Is this the end(‐to‐end revolution)?

Published in:

Proteins, 2021, v. 89, n. 12, p. 1770, doi. 10.1002/prot.26235

By:

Laine, Elodie;
Eismann, Stephan;
Elofsson, Arne;
Grudinin, Sergei

Publication type:

Article

When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14—(tFold for CASP14 contact prediction).

Published in:

Proteins, 2021, v. 89, n. 12, p. 1901, doi. 10.1002/prot.26232

By:

Shen, Tao;
Wu, Jiaxiang;
Lan, Haidong;
Zheng, Liangzhen;
Pei, Jianguo;
Wang, Sheng;
Liu, Wei;
Huang, Junzhou

Publication type:

Article

Assessing the utility of CASP14 models for molecular replacement.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1752, doi. 10.1002/prot.26214

By:

Millán, Claudia;
Keegan, Ronan M.;
Pereira, Joana;
Sammito, Massimo D.;
Simpkin, Adam J.;
McCoy, Airlie J.;
Lupas, Andrei N.;
Hartmann, Marcus D.;
Rigden, Daniel J.;
Read, Randy J.

Publication type:

Article

Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14).

Published in:

Proteins, 2021, v. 89, n. 12, p. 1700, doi. 10.1002/prot.26225

By:

Schaeffer, R. Dustin;
Kinch, Lisa;
Kryshtafovych, Andriy;
Grishin, Nick V.

Publication type:

Article

Computational models in the service of X‐ray and cryo‐electron microscopy structure determination.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1633, doi. 10.1002/prot.26223

By:

Kryshtafovych, Andriy;
Moult, John;
Albrecht, Reinhard;
Chang, Geoffrey A.;
Chao, Kinlin;
Fraser, Alec;
Greenfield, Julia;
Hartmann, Marcus D.;
Herzberg, Osnat;
Josts, Inokentijs;
Leiman, Petr G.;
Linden, Sara B.;
Lupas, Andrei N.;
Nelson, Daniel C.;
Rees, Steven D.;
Shang, Xiaoran;
Sokolova, Maria L.;
Tidow, Henning

Publication type:

Article

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1800, doi. 10.1002/prot.26222

By:

Lensink, Marc F.;
Brysbaert, Guillaume;
Mauri, Théo;
Nadzirin, Nurul;
Velankar, Sameer;
Chaleil, Raphael A. G.;
Clarence, Tereza;
Bates, Paul A.;
Kong, Ren;
Liu, Bin;
Yang, Guangbo;
Liu, Ming;
Shi, Hang;
Lu, Xufeng;
Chang, Shan;
Roy, Raj S.;
Quadir, Farhan;
Liu, Jian;
Cheng, Jianlin;
Antoniak, Anna

Publication type:

Article

Cryo‐EM targets in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1949, doi. 10.1002/prot.26216

By:

Cragnolini, Tristan;
Kryshtafovych, Andriy;
Topf, Maya

Publication type:

Article

Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1987, doi. 10.1002/prot.26231

By:

Kryshtafovych, Andriy;
Moult, John;
Billings, Wendy M.;
Della Corte, Dennis;
Fidelis, Krzysztof;
Kwon, Sohee;
Olechnovič, Kliment;
Seok, Chaok;
Venclovas, Česlovas;
Won, Jonghun

Publication type:

Article

Continuous Automated Model EvaluatiOn (CAMEO)—Perspectives on the future of fully automated evaluation of structure prediction methods.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1977, doi. 10.1002/prot.26213

By:

Robin, Xavier;
Haas, Juergen;
Gumienny, Rafal;
Smolinski, Anna;
Tauriello, Gerardo;
Schwede, Torsten

Publication type:

Article

Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1911, doi. 10.1002/prot.26211

By:

Li, Yang;
Zhang, Chengxin;
Zheng, Wei;
Zhou, Xiaogen;
Bell, Eric W.;
Yu, Dong‐Jun;
Zhang, Yang

Publication type:

Article

Assessing the binding properties of CASP14 targets and models.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1922, doi. 10.1002/prot.26209

By:

Egbert, Megan;
Ghani, Usman;
Ashizawa, Ryota;
Kotelnikov, Sergei;
Nguyen, Thu;
Desta, Israel;
Hashemi, Nasser;
Padhorny, Dzmitry;
Kozakov, Dima;
Vajda, Sandor

Publication type:

Article

Protein oligomer structure prediction using GALAXY in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1844, doi. 10.1002/prot.26203

By:

Park, Taeyong;
Woo, Hyeonuk;
Yang, Jinsol;
Kwon, Sohee;
Won, Jonghun;
Seok, Chaok

Publication type:

Article

Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14).

Published in:

Proteins, 2021, v. 89, n. 12, p. 1618, doi. 10.1002/prot.26202

By:

Kinch, Lisa N.;
Schaeffer, R. Dustin;
Kryshtafovych, Andriy;
Grishin, Nick V.

Publication type:

Article

Assessment of the CASP14 assembly predictions.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1787, doi. 10.1002/prot.26199

By:

Ozden, Burcu;
Kryshtafovych, Andriy;
Karaca, Ezgi

Publication type:

Article

Protein oligomer modeling guided by predicted interchain contacts in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1824, doi. 10.1002/prot.26197

By:

Baek, Minkyung;
Anishchenko, Ivan;
Park, Hahnbeom;
Humphreys, Ian R.;
Baker, David

Publication type:

Article

Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1722, doi. 10.1002/prot.26194

By:

Anishchenko, Ivan;
Baek, Minkyung;
Park, Hahnbeom;
Hiranuma, Naozumi;
Kim, David E.;
Dauparas, Justas;
Mansoor, Sanaa;
Humphreys, Ian R.;
Baker, David

Publication type:

Article

Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1734, doi. 10.1002/prot.26193

By:

Zheng, Wei;
Li, Yang;
Zhang, Chengxin;
Zhou, Xiaogen;
Pearce, Robin;
Bell, Eric W.;
Huang, Xiaoqiang;
Zhang, Yang

Publication type:

Article

Assessment of protein model structure accuracy estimation in CASP14: Old and new challenges.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1940, doi. 10.1002/prot.26192

By:

Kwon, Sohee;
Won, Jonghun;
Kryshtafovych, Andriy;
Seok, Chaok

Publication type:

Article

Evaluation of model refinement in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1852, doi. 10.1002/prot.26185

By:

Simpkin, Adam J.;
Sánchez Rodríguez, Filomeno;
Mesdaghi, Shahram;
Kryshtafovych, Andriy;
Rigden, Daniel J.

Publication type:

Article

Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14).

Published in:

Proteins, 2021, v. 89, n. 12, p. 1673, doi. 10.1002/prot.26172

By:

Kinch, Lisa N.;
Pei, Jimin;
Kryshtafovych, Andriy;
Schaeffer, R. Dustin;
Grishin, Nick V.

Publication type:

Article

High‐accuracy protein structure prediction in CASP14.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1687, doi. 10.1002/prot.26171

By:

Pereira, Joana;
Simpkin, Adam J.;
Hartmann, Marcus D.;
Rigden, Daniel J.;
Keegan, Ronan M.;
Lupas, Andrei N.

Publication type:

Article

Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1834, doi. 10.1002/prot.26167

By:

Dapkūnas, Justas;
Olechnovič, Kliment;
Venclovas, Česlovas

Publication type:

Article

Physics‐based protein structure refinement in the era of artificial intelligence.

Published in:

Proteins, 2021, v. 89, n. 12, p. 1870, doi. 10.1002/prot.26161

By:

Heo, Lim;
Janson, Giacomo;
Feig, Michael

Publication type:

Article

Cover Image, Volume 89, Issue 12.

Published in:: Proteins, 2021, v. 89, n. 12, p. C4, doi. 10.1002/prot.25948
Publication type:: Article

Cover Image, Volume 89, Issue 12.

Published in:: Proteins, 2021, v. 89, n. 12, p. C1, doi. 10.1002/prot.25948
Publication type:: Article

Issue Information ‐ Forthcoming.

Published in:: Proteins, 2021, v. 89, n. 12, p. 1997, doi. 10.1002/prot.25947
Publication type:: Article

Issue Information ‐ Table of Content.

Published in:: Proteins, 2021, v. 89, n. 12, p. 1603, doi. 10.1002/prot.25946
Publication type:: Article