Works matching IS 08873585 AND DT 2020 AND VI 88 AND IP 8

Results: 24

Cover Image, Volume 88, Issue 8.

Published in:: Proteins, 2020, v. 88, n. 8, p. C4, doi. 10.1002/prot.25976
Publication type:: Article

Cover Image, Volume 88, Issue 8.

Published in:

Proteins, 2020, v. 88, n. 8, p. C1, doi. 10.1002/prot.25975

By:

Lensink, Marc F.;
Nadzirin, Nurul;
Velankar, Sameer;
Wodak, Shoshana J.

Publication type:

Article

Using restraints in EROS‐DOCK improves model quality in pairwise and multicomponent protein docking.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1121, doi. 10.1002/prot.25959

By:

Ruiz Echartea, Maria Elisa;
Ritchie, David W.;
Chauvot de Beauchêne, Isaure

Publication type:

Article

Performance of human and server prediction in CAPRI rounds 38‐45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1110, doi. 10.1002/prot.25956

By:

Duan, Rui;
Qiu, Liming;
Xu, Xianjin;
Ma, Zhiwei;
Merideth, Benjamin Ryan;
Shyu, Chi‐Ren;
Zou, Xiaoqin

Publication type:

Article

Template‐based modeling and ab‐initio docking using CoDock in CAPRI.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1100, doi. 10.1002/prot.25892

By:

Kong, Ren;
Liu, Ran‐Ran;
Xu, Xi‐Ming;
Zhang, Da‐Wei;
Xu, Xiao‐Shuang;
Shi, Hang;
Chang, Shan

Publication type:

Article

Energy‐based graph convolutional networks for scoring protein docking models.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1091, doi. 10.1002/prot.25888

By:

Cao, Yue;
Shen, Yang

Publication type:

Article

Performance of ZDOCK and IRAD in CAPRI rounds 39‐45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1050, doi. 10.1002/prot.25873

By:

Vreven, Thom;
Vangaveti, Sweta;
Borrman, Tyler M.;
Gaines, Jennifer C.;
Weng, Zhiping

Publication type:

Article

Modeling protein interactions and complexes in CAPRI: Seventh CAPRI evaluation meeting, April 3‐5 EMBL‐EBI, Hinxton, UK.

Published in:

Proteins, 2020, v. 88, n. 8, p. 913, doi. 10.1002/prot.25883

By:

Wodak, Shoshana J.;
Velankar, Sameer;
Sternberg, Michael J. E.

Publication type:

Article

How to choose templates for modeling of protein complexes: Insights from benchmarking template‐based docking.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1070, doi. 10.1002/prot.25875

By:

Chakravarty, Devlina;
McElfresh, GW;
Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

Challenges and opportunities of automated protein‐protein docking: HDOCK server vs human predictions in CAPRI Rounds 38‐46.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1055, doi. 10.1002/prot.25874

By:

Yan, Yumeng;
He, Jiahua;
Feng, Yuyu;
Lin, Peicong;
Tao, Huanyu;
Huang, Sheng‐You

Publication type:

Article

Integrative modeling of protein‐protein interactions with pyDock for the new docking challenges.

Published in:

Proteins, 2020, v. 88, n. 8, p. 999, doi. 10.1002/prot.25858

By:

Rosell, Mireia;
Rodríguez‐Lumbreras, Luis A.;
Romero‐Durana, Miguel;
Jiménez‐García, Brian;
Díaz, Lucía;
Fernández‐Recio, Juan

Publication type:

Article

ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1082, doi. 10.1002/prot.25887

By:

Padhorny, Dzmitry;
Porter, Kathryn A.;
Ignatov, Mikhail;
Alekseenko, Andrey;
Beglov, Dmitri;
Kotelnikov, Sergei;
Ashizawa, Ryota;
Desta, Israel;
Alam, Nawsad;
Sun, Zhuyezi;
Brini, Emiliano;
Dill, Ken;
Schueler‐Furman, Ora;
Vajda, Sandor;
Kozakov, Dima

Publication type:

Article

Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition.

Published in:

Proteins, 2020, v. 88, n. 8, p. 916, doi. 10.1002/prot.25870

By:

Lensink, Marc F.;
Nadzirin, Nurul;
Velankar, Sameer;
Wodak, Shoshana J.

Publication type:

Article

An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1029, doi. 10.1002/prot.25869

By:

Koukos, Panagiotis I.;
Roel‐Touris, Jorge;
Ambrosetti, Francesco;
Geng, Cunliang;
Schaarschmidt, Jörg;
Trellet, Mikael E.;
Melquiond, Adrien S. J.;
Xue, Li C.;
Honorato, Rodrigo V.;
Moreira, Irina;
Kurkcuoglu, Zeynep;
Vangone, Anna;
Bonvin, Alexandre M. J. J.

Publication type:

Article

Coarse‐grained and atomic resolution biomolecular docking with the ATTRACT approach.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1018, doi. 10.1002/prot.25860

By:

Glashagen, Glenn;
Vries, Sjoerd;
Uciechowska‐Kaczmarzyk, Urszula;
Samsonov, Sergey A.;
Murail, Samuel;
Tuffery, Pierre;
Zacharias, Martin

Publication type:

Article

Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38‐45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1009, doi. 10.1002/prot.25859

By:

Park, Taeyong;
Woo, Hyeonuk;
Baek, Minkyung;
Yang, Jinsol;
Seok, Chaok

Publication type:

Article

Modeling beta‐sheet peptide‐protein interactions: Rosetta FlexPepDock in CAPRI rounds 38‐45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 1037, doi. 10.1002/prot.25871

By:

Khramushin, Alisa;
Marcu, Orly;
Alam, Nawsad;
Shimony, Orly;
Padhorny, Dzmitry;
Brini, Emiliano;
Dill, Ken A.;
Vajda, Sandor;
Kozakov, Dima;
Schueler‐Furman, Ora

Publication type:

Article

Docking proteins and peptides under evolutionary constraints in Critical Assessment of PRediction of Interactions rounds 38 to 45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 986, doi. 10.1002/prot.25857

By:

Nadaradjane, Aravindan Arun;
Quignot, Chloé;
Traoré, Seydou;
Andreani, Jessica;
Guerois, Raphaël

Publication type:

Article

Novel sampling strategies and a coarse‐grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37–45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 973, doi. 10.1002/prot.25855

By:

Roy Burman, Shourya S.;
Nance, Morgan L.;
Jeliazkov, Jeliazko R.;
Labonte, Jason W.;
Lubin, Joseph H.;
Biswas, Naireeta;
Gray, Jeffrey J.

Publication type:

Article

Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock.

Published in:

Proteins, 2020, v. 88, n. 8, p. 962, doi. 10.1002/prot.25851

By:

Torchala, Mieczyslaw;
Gerguri, Tereza;
Chaleil, Raphael A. G.;
Gordon, Patrick;
Russell, Francis;
Keshani, Miriam;
Bates, Paul A.

Publication type:

Article

Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46.

Published in:

Proteins, 2020, v. 88, n. 8, p. 948, doi. 10.1002/prot.25850

By:

Christoffer, Charles;
Terashi, Genki;
Shin, Woong‐Hee;
Aderinwale, Tunde;
Maddhuri Venkata Subramaniya, Sai Raghavendra;
Peterson, Lenna;
Verburgt, Jacob;
Kihara, Daisuke

Publication type:

Article

Template‐based modeling of diverse protein interactions in CAPRI rounds 38‐45.

Published in:

Proteins, 2020, v. 88, n. 8, p. 939, doi. 10.1002/prot.25845

By:

Dapkūnas, Justas;
Kairys, Visvaldas;
Olechnovič, Kliment;
Venclovas, Česlovas

Publication type:

Article

Issue Information ‐ Forthcoming.

Published in:: Proteins, 2020, v. 88, n. 8, p. 1129, doi. 10.1002/prot.25731
Publication type:: Article

Issue Information ‐ Table of Content.

Published in:: Proteins, 2020, v. 88, n. 8, p. 911, doi. 10.1002/prot.25729
Publication type:: Article