Works matching IS 08873585 AND DT 2019 AND VI 87 AND IP 12

Results: 34

Critical assessment of methods of protein structure prediction (CASP)—Round XIII.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1011, doi. 10.1002/prot.25823

By:

Kryshtafovych, Andriy;
Schwede, Torsten;
Topf, Maya;
Fidelis, Krzysztof;
Moult, John

Publication type:

Article

Assessment of protein assembly prediction in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1190, doi. 10.1002/prot.25795

By:

Guzenko, Dmytro;
Lafita, Aleix;
Monastyrskyy, Bohdan;
Kryshtafovych, Andriy;
Duarte, Jose M.

Publication type:

Article

Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13).

Published in:

Proteins, 2019, v. 87, n. 12, p. 1141, doi. 10.1002/prot.25834

By:

Senior, Andrew W.;
Evans, Richard;
Jumper, John;
Kirkpatrick, James;
Sifre, Laurent;
Green, Tim;
Qin, Chongli;
Žídek, Augustin;
Nelson, Alexander W. R.;
Bridgland, Alex;
Penedones, Hugo;
Petersen, Stig;
Simonyan, Karen;
Crossan, Steve;
Kohli, Pushmeet;
Jones, David T.;
Silver, David;
Kavukcuoglu, Koray;
Hassabis, Demis

Publication type:

Article

Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differences.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1298, doi. 10.1002/prot.25827

By:

Hura, Greg L.;
Hodge, Curtis D.;
Rosenberg, Daniel;
Guzenko, Dmytro;
Duarte, Jose M.;
Monastyrskyy, Bohdan;
Grudinin, Sergei;
Kryshtafovych, Andriy;
Tainer, John A.;
Fidelis, Krzysztof;
Tsutakawa, Susan E.

Publication type:

Article

Recent developments in deep learning applied to protein structure prediction.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1179, doi. 10.1002/prot.25824

By:

Kandathil, Shaun M.;
Greener, Joe G.;
Jones, David T.

Publication type:

Article

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1200, doi. 10.1002/prot.25838

By:

Lensink, Marc F.;
Brysbaert, Guillaume;
Nadzirin, Nurul;
Velankar, Sameer;
Chaleil, Raphaël A. G.;
Gerguri, Tereza;
Bates, Paul A.;
Laine, Elodie;
Carbone, Alessandra;
Grudinin, Sergei;
Kong, Ren;
Liu, Ran‐Ran;
Xu, Xi‐Ming;
Shi, Hang;
Chang, Shan;
Eisenstein, Miriam;
Karczynska, Agnieszka;
Czaplewski, Cezary;
Lubecka, Emilia;
Lipska, Agnieszka

Publication type:

Article

Protein structure prediction assisted with sparse NMR data in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1315, doi. 10.1002/prot.25837

By:

Sala, Davide;
Huang, Yuanpeng Janet;
Cole, Casey A.;
Snyder, David A.;
Liu, Gaohua;
Ishida, Yojiro;
Swapna, G.V.T.;
Brock, Kelly P.;
Sander, Chris;
Fidelis, Krzysztof;
Kryshtafovych, Andriy;
Inouye, Masayori;
Tejero, Roberto;
Valafar, Homayoun;
Rosato, Antonio;
Montelione, Gaetano T.

Publication type:

Article

Assessing the accuracy of contact predictions in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1058, doi. 10.1002/prot.25819

By:

Shrestha, Rojan;
Fajardo, Eduardo;
Gil, Nelson;
Fidelis, Krzysztof;
Kryshtafovych, Andriy;
Monastyrskyy, Bohdan;
Fiser, Andras

Publication type:

Article

Target highlights in CASP13: Experimental target structures through the eyes of their authors.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1037, doi. 10.1002/prot.25805

By:

Lepore, Rosalba;
Kryshtafovych, Andriy;
Alahuhta, Markus;
Veraszto, Harshul A.;
Bomble, Yannick J.;
Bufton, Joshua C.;
Bullock, Alex N.;
Caba, Cody;
Cao, Hongnan;
Davies, Owen R.;
Desfosses, Ambroise;
Dunne, Matthew;
Fidelis, Krzysztof;
Goulding, Celia W.;
Gurusaran, Manickam;
Gutsche, Irina;
Harding, Christopher J.;
Hartmann, Marcus D.;
Hayes, Christopher S.;
Joachimiak, Andrzej

Publication type:

Article

Introducing "best single template" models as reference baseline for the Continuous Automated Model Evaluation (CAMEO).

Published in:

Proteins, 2019, v. 87, n. 12, p. 1378, doi. 10.1002/prot.25815

By:

Haas, Juergen;
Gumienny, Rafal;
Barbato, Alessandro;
Ackermann, Flavio;
Tauriello, Gerardo;
Bertoni, Martino;
Studer, Gabriel;
Smolinski, Anna;
Schwede, Torsten

Publication type:

Article

Prediction of protein oligomer structures using GALAXY in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1233, doi. 10.1002/prot.25814

By:

Baek, Minkyung;
Park, Taeyong;
Woo, Hyeonuk;
Seok, Chaok

Publication type:

Article

Analysis of distance‐based protein structure prediction by deep learning in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1069, doi. 10.1002/prot.25810

By:

Xu, Jinbo;
Wang, Sheng

Publication type:

Article

Cryo‐electron microscopy targets in CASP13: Overview and evaluation of results.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1128, doi. 10.1002/prot.25817

By:

Kryshtafovych, Andriy;
Malhotra, Sony;
Monastyrskyy, Bohdan;
Cragnolini, Tristan;
Joseph, Agnel‐Praveen;
Chiu, Wah;
Topf, Maya

Publication type:

Article

Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1283, doi. 10.1002/prot.25816

By:

Fajardo, J. Eduardo;
Shrestha, Rojan;
Gil, Nelson;
Belsom, Adam;
Crivelli, Silvia N.;
Czaplewski, Cezary;
Fidelis, Krzysztof;
Grudinin, Sergei;
Karasikov, Mikhail;
Karczyńska, Agnieszka S.;
Kryshtafovych, Andriy;
Leitner, Alexander;
Liwo, Adam;
Lubecka, Emilia A.;
Monastyrskyy, Bohdan;
Pagès, Guillaume;
Rappsilber, Juri;
Sieradzan, Adam K.;
Sikorska, Celina;
Trabjerg, Esben

Publication type:

Article

Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1351, doi. 10.1002/prot.25804

By:

Won, Jonghun;
Baek, Minkyung;
Monastyrskyy, Bohdan;
Kryshtafovych, Andriy;
Seok, Chaok

Publication type:

Article

Evaluation of template‐based modeling in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1113, doi. 10.1002/prot.25800

By:

Croll, Tristan I.;
Sammito, Massimo D.;
Kryshtafovych, Andriy;
Read, Randy J.

Publication type:

Article

Ensembling multiple raw coevolutionary features with deep residual neural networks for contact‐map prediction in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1082, doi. 10.1002/prot.25798

By:

Li, Yang;
Zhang, Chengxin;
Bell, Eric W.;
Yu, Dong‐Jun;
Zhang, Yang

Publication type:

Article

Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1241, doi. 10.1002/prot.25808

By:

Porter, Kathryn A.;
Padhorny, Dzmitry;
Desta, Israel;
Ignatov, Mikhail;
Beglov, Dmitri;
Kotelnikov, Sergei;
Sun, Zhuyezi;
Alekseenko, Andrey;
Anishchenko, Ivan;
Cong, Qian;
Ovchinnikov, Sergey;
Baker, David;
Vajda, Sandor;
Kozakov, Dima

Publication type:

Article

Evaluation of model refinement in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1249, doi. 10.1002/prot.25794

By:

Read, Randy J.;
Sammito, Massimo D.;
Kryshtafovych, Andriy;
Croll, Tristan I.

Publication type:

Article

Deep‐learning contact‐map guided protein structure prediction in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1149, doi. 10.1002/prot.25792

By:

Zheng, Wei;
Li, Yang;
Zhang, Chengxin;
Pearce, Robin;
Mortuza, S. M.;
Zhang, Yang

Publication type:

Article

NMR‐assisted protein structure prediction with MELDxMD.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1333, doi. 10.1002/prot.25788

By:

Robertson, James C.;
Nassar, Roy;
Liu, Cong;
Brini, Emiliano;
Dill, Ken A.;
Perez, Alberto

Publication type:

Article

A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1100, doi. 10.1002/prot.25787

By:

Abriata, Luciano A.;
Tamò, Giorgio E.;
Dal Peraro, Matteo

Publication type:

Article

High‐accuracy refinement using Rosetta in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1276, doi. 10.1002/prot.25784

By:

Park, Hahnbeom;
Lee, Gyu Rie;
Kim, David E.;
Anishchenko, Ivan;
Cong, Qian;
Baker, David

Publication type:

Article

Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1092, doi. 10.1002/prot.25779

By:

Kandathil, Shaun M.;
Greener, Joe G.;
Jones, David T.

Publication type:

Article

CASP13 target classification into tertiary structure prediction categories.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1021, doi. 10.1002/prot.25775

By:

Kinch, Lisa N.;
Kryshtafovych, Andriy;
Monastyrskyy, Bohdan;
Grishin, Nick V.

Publication type:

Article

Structural modeling of protein complexes: Current capabilities and challenges.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1222, doi. 10.1002/prot.25774

By:

Dapkūnas, Justas;
Olechnovič, Kliment;
Venclovas, Česlovas

Publication type:

Article

Protein structure prediction using sparse NOE and RDC restraints with Rosetta in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1341, doi. 10.1002/prot.25769

By:

Kuenze, Georg;
Meiler, Jens

Publication type:

Article

Issue Information ‐ Table of Content.

Published in:: Proteins, 2019, v. 87, n. 12, p. 1007, doi. 10.1002/prot.25567
Publication type:: Article

Driven to near‐experimental accuracy by refinement via molecular dynamics simulations.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1263, doi. 10.1002/prot.25759

By:

Heo, Lim;
Arbour, Collin F.;
Feig, Michael

Publication type:

Article

Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1165, doi. 10.1002/prot.25697

By:

Hou, Jie;
Wu, Tianqi;
Cao, Renzhi;
Cheng, Jianlin

Publication type:

Article

Issue Information ‐ Forthcoming.

Published in:: Proteins, 2019, v. 87, n. 12, p. 1388, doi. 10.1002/prot.25569
Publication type:: Article

Cover Image, Volume 87, Issue 12.

Published in:: Proteins, 2019, v. 87, n. 12, p. C1, doi. 10.1002/prot.25633
Publication type:: Article

Estimation of model accuracy in CASP13.

Published in:

Proteins, 2019, v. 87, n. 12, p. 1361, doi. 10.1002/prot.25767

By:

Cheng, Jianlin;
Choe, Myong‐Ho;
Elofsson, Arne;
Han, Kun‐Sop;
Hou, Jie;
Maghrabi, Ali H. A.;
McGuffin, Liam J.;
Menéndez‐Hurtado, David;
Olechnovič, Kliment;
Schwede, Torsten;
Studer, Gabriel;
Uziela, Karolis;
Venclovas, Česlovas;
Wallner, Björn

Publication type:

Article

Cover Image, Volume 87, Issue 12.

Published in:

Proteins, 2019, v. 87, n. 12, p. C4, doi. 10.1002/prot.25565

By:

Kryshtafovych, Andriy;
Schwede, Torsten;
Topf, Maya;
Fidelis, Krzysztof;
Moult, John

Publication type:

Article