Works matching IS 08873585 AND DT 2017 AND VI 85 AND IP 3

Results: 22

Cover Image, Volume 85, Issue 3.

Published in:

Proteins, 2017, v. 85, n. 3, p. C4, doi. 10.1002/prot.25117

By:

Lee, Hasup;
Baek, Minkyung;
Lee, Gyu Rie;
Park, Sangwoo;
Seok, Chaok

Publication type:

Article

Issue Information - Table of Content.

Published in:: Proteins, 2017, v. 85, n. 3, p. 355, doi. 10.1002/prot.25119
Publication type:: Article

Cover Image, Volume 85, Issue 3.

Published in:

Proteins, 2017, v. 85, n. 3, p. C1, doi. 10.1002/prot.25120

By:

Lensink, Marc F.;
Velankar, Sameer;
Wodak, Shoshana J.

Publication type:

Article

Issue Information - Forthcoming.

Published in:: Proteins, 2017, v. 85, n. 3, p. 557, doi. 10.1002/prot.25121
Publication type:: Article

Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.

Published in:

Proteins, 2017, v. 85, n. 3, p. 513, doi. 10.1002/prot.25165

By:

Peterson, Lenna X.;
Kim, Hyungrae;
Esquivel‐Rodriguez, Juan;
Roy, Amitava;
Han, Xusi;
Shin, Woong‐Hee;
Zhang, Jian;
Terashi, Genki;
Lee, Matt;
Kihara, Daisuke

Publication type:

Article

Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35.

Published in:

Proteins, 2017, v. 85, n. 3, p. 479, doi. 10.1002/prot.25168

By:

Marze, Nicholas A.;
Jeliazkov, Jeliazko R.;
Roy Burman, Shourya S.;
Boyken, Scott E.;
DiMaio, Frank;
Gray, Jeffrey J.

Publication type:

Article

Lessons from (co-)evolution in the docking of proteins and peptides for CAPRI Rounds 28-35.

Published in:

Proteins, 2017, v. 85, n. 3, p. 378, doi. 10.1002/prot.25180

By:

Yu, Jinchao;
Andreani, Jessica;
Ochsenbein, Françoise;
Guerois, Raphaël

Publication type:

Article

Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.

Published in:

Proteins, 2017, v. 85, n. 3, p. 463, doi. 10.1002/prot.25182

By:

El Houasli, Marwa;
Maigret, Bernard;
Devignes, Marie‐Dominique;
Ghoorah, Anisah W.;
Grudinin, Sergei;
Ritchie, David W.

Publication type:

Article

Modeling complexes of modeled proteins.

Published in:

Proteins, 2017, v. 85, n. 3, p. 470, doi. 10.1002/prot.25183

By:

Anishchenko, Ivan;
Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.

Published in:

Proteins, 2017, v. 85, n. 3, p. 487, doi. 10.1002/prot.25184

By:

Pallara, Chiara;
Jiménez‐García, Brian;
Romero, Miguel;
Moal, Iain H.;
Fernández‐Recio, Juan

Publication type:

Article

Performance of ZDOCK and IRAD in CAPRI rounds 28-34.

Published in:

Proteins, 2017, v. 85, n. 3, p. 408, doi. 10.1002/prot.25186

By:

Vreven, Thom;
Pierce, Brian G.;
Borrman, Tyler M.;
Weng, Zhiping

Publication type:

Article

Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.

Published in:

Proteins, 2017, v. 85, n. 3, p. 399, doi. 10.1002/prot.25192

By:

Lee, Hasup;
Baek, Minkyung;
Lee, Gyu Rie;
Park, Sangwoo;
Seok, Chaok

Publication type:

Article

Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.

Published in:

Proteins, 2017, v. 85, n. 3, p. 391, doi. 10.1002/prot.25196

By:

Schindler, Christina E. M.;
Chauvot de Beauchêne, Isaure;
de Vries, Sjoerd J.;
Zacharias, Martin

Publication type:

Article

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

Published in:

Proteins, 2017, v. 85, n. 3, p. 417, doi. 10.1002/prot.25198

By:

Vangone, A.;
Rodrigues, J. P. G. L. M.;
Xue, L. C.;
van Zundert, G. C. P.;
Geng, C.;
Kurkcuoglu, Z.;
Nellen, M.;
Narasimhan, S.;
Karaca, E.;
van Dijk, M.;
Melquiond, A. S. J.;
Visscher, K. M.;
Trellet, M.;
Kastritis, P. L.;
Bonvin, A. M. J. J.

Publication type:

Article

Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.

Published in:

Proteins, 2017, v. 85, n. 3, p. 424, doi. 10.1002/prot.25203

By:

Xu, Xianjin;
Qiu, Liming;
Yan, Chengfei;
Ma, Zhiwei;
Grinter, Sam Z.;
Zou, Xiaoqin

Publication type:

Article

Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility.

Published in:

Proteins, 2017, v. 85, n. 3, p. 544, doi. 10.1002/prot.25212

By:

Chen, Haoran;
Sun, Yuanfei;
Shen, Yang

Publication type:

Article

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition.

Published in:

Proteins, 2017, v. 85, n. 3, p. 359, doi. 10.1002/prot.25215

By:

Lensink, Marc F.;
Velankar, Sameer;
Wodak, Shoshana J.

Publication type:

Article

A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.

Published in:

Proteins, 2017, v. 85, n. 3, p. 528, doi. 10.1002/prot.25218

By:

Pfeiffenberger, Erik;
Chaleil, Raphael A.G.;
Moal, Iain H.;
Bates, Paul A.

Publication type:

Article

New additions to the Clus Pro server motivated by CAPRI.

Published in:

Proteins, 2017, v. 85, n. 3, p. 435, doi. 10.1002/prot.25219

By:

Vajda, Sandor;
Yueh, Christine;
Beglov, Dmitri;
Bohnuud, Tanggis;
Mottarella, Scott E.;
Xia, Bing;
Hall, David R.;
Kozakov, Dima

Publication type:

Article

FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility.

Published in:

Proteins, 2017, v. 85, n. 3, p. 445, doi. 10.1002/prot.25230

By:

Marcu, Orly;
Dodson, Emma‐Joy;
Alam, Nawsad;
Sperber, Michal;
Kozakov, Dima;
Lensink, Marc F.;
Schueler‐Furman, Ora

Publication type:

Article

Modeling protein assemblies: Critical Assessment of Predicted Interactions (CAPRI) 15 years hence.

Published in:

2017

By:

Wodak, Shoshana J.;
Janin, Joel

Publication type:

Editorial

Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.

Published in:

Proteins, 2017, v. 85, n. 3, p. 497, doi. 10.1002/prot.25234

By:

Yan, Yumeng;
Wen, Zeyu;
Wang, Xinxiang;
Huang, Sheng‐You

Publication type:

Article