Works matching IS 08873585 AND DT 2016 AND VI 84

Results: 218

Issue Information - Table of Content.

Published in:: Proteins, 2016, v. 84, n. 12, p. 1759, doi. 10.1002/prot.24910
Publication type:: Article

Issue Information - Forthcoming.

Published in:: Proteins, 2016, v. 84, n. 12, p. 1950, doi. 10.1002/prot.24912
Publication type:: Article

Temperature-induced unfolding behavior of proteins studied by tensorial elastic network model.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1767, doi. 10.1002/prot.25157

By:

Srivastava, Amit;
Granek, Rony

Publication type:

Article

The flexibility and dynamics of protein disulfide isomerase.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1776, doi. 10.1002/prot.25159

By:

Römer, Rudolf A.;
Wells, Stephen A.;
Emilio Jimenez‐Roldan, J.;
Bhattacharyya, Moitrayee;
Vishweshwara, Saraswathi;
Freedman, Robert B.

Publication type:

Article

Unique coenzyme binding mode of hyperthermophilic archaeal sn-glycerol-1-phosphate dehydrogenase from Pyrobaculum calidifontis.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1786, doi. 10.1002/prot.25161

By:

Hayashi, Junji;
Yamamoto, Kaori;
Yoneda, Kazunari;
Ohshima, Toshihisa;
Sakuraba, Haruhiko

Publication type:

Article

Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1797, doi. 10.1002/prot.25162

By:

Peng, Yunhui;
Alexov, Emil

Publication type:

Article

Substrate specificity characterization for eight putative nudix hydrolases. Evaluation of criteria for substrate identification within the Nudix family.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1810, doi. 10.1002/prot.25163

By:

Nguyen, Vi N.;
Park, Annsea;
Xu, Anting;
Srouji, John R.;
Brenner, Steven E.;
Kirsch, Jack F.

Publication type:

Article

Predicting the functional motions of p97 using symmetric normal modes.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1823, doi. 10.1002/prot.25164

By:

Na, Hyuntae;
Song, Guang

Publication type:

Article

The role of electrostatics in TrxR electron transfer mechanism: A computational approach.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1836, doi. 10.1002/prot.25166

By:

Teixeira, Vitor H.;
Capacho, Ana Sofia C.;
Machuqueiro, Miguel

Publication type:

Article

Comparative electrostatic analysis of adenylyl cyclase for isoform dependent regulation properties.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1844, doi. 10.1002/prot.25167

By:

Tong, Rudi;
Wade, Rebecca C.;
Bruce, Neil J.

Publication type:

Article

Development of a motif-based topology-independent structure comparison method to identify evolutionarily related folds.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1859, doi. 10.1002/prot.25169

By:

Dybas, Joseph M.;
Fiser, Andras

Publication type:

Article

Molecular modeling and redesign of alginate lyase from Pseudomonas aeruginosa for accelerating CRPA biofilm degradation.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1875, doi. 10.1002/prot.25171

By:

Cho, Hoon;
Huang, Xiaoqin;
Lan Piao, Yu;
Eun Kim, Da;
Yeon Lee, So;
Jeong Yoon, Eun;
Hee Park, So;
Lee, Kyoung;
Ho Jang, Chul;
Zhan, Chang‐Guo

Publication type:

Article

Detecting the native ligand orientation by interfacial rigidity: SiteInterlock.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1888, doi. 10.1002/prot.25172

By:

Raschka, Sebastian;
Bemister‐Buffington, Joseph;
Kuhn, Leslie A.

Publication type:

Article

A multi-resolution model to capture both global fluctuations of an enzyme and molecular recognition in the ligand-binding site.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1902, doi. 10.1002/prot.25173

By:

Fogarty, Aoife C.;
Potestio, Raffaello;
Kremer, Kurt

Publication type:

Article

Structural basis of reversine selectivity in inhibiting Mps1 more potently than aurora B kinase.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1761, doi. 10.1002/prot.25174

By:

Hiruma, Yoshitaka;
Koch, Andre;
Dharadhar, Shreya;
Joosten, Robbie P.;
Perrakis, Anastassis

Publication type:

Article

Determination of binding affinity upon mutation for type I dockerin-cohesin complexes from C lostridium thermocellum and C lostridium cellulolyticum using deep sequencing.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1914, doi. 10.1002/prot.25175

By:

Kowalsky, Caitlin A.;
Whitehead, Timothy A.

Publication type:

Article

Three pairs of weak interactions precisely regulate the G-loop gate of Kir2.1 channel.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1929, doi. 10.1002/prot.25176

By:

Li, Junwei;
Xiao, Shaoying;
Xie, Xiaoxiao;
Zhou, Hui;
Pang, Chunli;
Li, Shanshan;
Zhang, Hailin;
Logothetis, Diomedes E.;
Zhan, Yong;
An, Hailong

Publication type:

Article

Toward elucidating the heat activation mechanism of the TRPV1 channel gating by molecular dynamics simulation.

Published in:

Proteins, 2016, v. 84, n. 12, p. 1938, doi. 10.1002/prot.25177

By:

Wen, Han;
Qin, Feng;
Zheng, Wenjun

Publication type:

Article

Cover Image, Volume 84, Issue 12.

Published in:

Proteins, 2016, v. 84, n. 12, p. C1, doi. 10.1002/prot.25194

By:

Hayashi, Junji;
Yamamoto, Kaori;
Yoneda, Kazunari;
Ohshima, Toshihisa;
Sakuraba, Haruhiko

Publication type:

Article

Cover Image, Volume 84, Issue 12.

Published in:

Proteins, 2016, v. 84, n. 12, p. C4, doi. 10.1002/prot.25195

By:

Na, Hyuntae;
Song, Guang

Publication type:

Article

Issue Information - Table of Content.

Published in:: Proteins, 2016, v. 84, n. 11, p. 1565, doi. 10.1002/prot.24907
Publication type:: Article

Issue Information - Forthcoming.

Published in:: Proteins, 2016, v. 84, n. 11, p. 1757, doi. 10.1002/prot.24909
Publication type:: Article

Conformational flexibility of the complete catalytic domain of Cdc25B phosphatases.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1567, doi. 10.1002/prot.25100

By:

Sayegh, Raphael S. R.;
Tamaki, Fabio K.;
Marana, Sandro R.;
Salinas, Roberto K.;
Arantes, Guilherme M.

Publication type:

Article

Amino acid function relates to its embedded protein microenvironment: A study on disulfide-bridged cystine.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1576, doi. 10.1002/prot.25101

By:

Bhatnagar, Akshay;
Apostol, Marcin I.;
Bandyopadhyay, Debashree

Publication type:

Article

Processivity of nucleic acid unwinding and translocation by helicases.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1590, doi. 10.1002/prot.25102

By:

Xie, Ping

Publication type:

Article

QM/MM studies on the calcium-assisted β-elimination mechanism of pectate lyase from bacillus subtilis.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1606, doi. 10.1002/prot.25103

By:

Ma, Guangcai;
Zhu, Wenyou;
Liu, Yongjun

Publication type:

Article

The control of the discrimination between dNTP and rNTP in DNA and RNA polymerase.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1616, doi. 10.1002/prot.25104

By:

Yoon, Hanwool;
Warshel, Arieh

Publication type:

Article

Structural mutation analysis of PTEN and its genotype-phenotype correlations in endometriosis and cancer.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1625, doi. 10.1002/prot.25105

By:

Smith, Iris N.;
Briggs, James M.

Publication type:

Article

Exploring the mechanism of DNA polymerases by analyzing the effect of mutations of active site acidic groups in Polymerase β.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1644, doi. 10.1002/prot.25106

By:

Matute, Ricardo A.;
Yoon, Hanwool;
Warshel, Arieh

Publication type:

Article

Role of W181 in modulating kinetic properties of Plasmodium falciparum hypoxanthine guanine xanthine phosphoribosyltransferase.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1658, doi. 10.1002/prot.25107

By:

Roy, Sourav;
Karmakar, Tarak;
Nagappa, Lakshmeesha K.;
Prahlada Rao, Vasudeva S.;
Balasubramanian, Sundaram;
Balaram, Hemalatha

Publication type:

Article

Analysis of proton wires in the enzyme active site suggests a mechanism of c-di-GMP hydrolysis by the EAL domain phosphodiesterases.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1670, doi. 10.1002/prot.25108

By:

Grigorenko, Bella L.;
Knyazeva, Marina A;
Nemukhin, Alexander V.

Publication type:

Article

Solution NMR structures of the C-domain of Tetrahymena cytoskeletal protein Tcb2 reveal distinct calcium-induced structural rearrangements.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1748, doi. 10.1002/prot.25111

By:

Kilpatrick, Adina M.;
Honts, Jerry E.;
Sleister, Heidi M.;
Fowler, C. Andrew

Publication type:

Article

The crystal structure of Clostridium perfringens SleM, a muramidase involved in cortical hydrolysis during spore germination.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1681, doi. 10.1002/prot.25112

By:

Al‐Riyami, Bahja;
Üstok, Fatma Işık;
Stott, Katherine;
Chirgadze, Dimitri Y.;
Christie, Graham

Publication type:

Article

Mechanisms for allosteric activation of protease DegS by ligand binding and oligomerization as revealed from molecular dynamics simulations.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1690, doi. 10.1002/prot.25154

By:

Lu, Cheng;
Stock, Gerhard;
Knecht, Volker

Publication type:

Article

TMSEG: Novel prediction of transmembrane helices.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1706, doi. 10.1002/prot.25155

By:

Bernhofer, Michael;
Kloppmann, Edda;
Reeb, Jonas;
Rost, Burkhard

Publication type:

Article

Molecular aspects of the interaction between Mason- Pfizer monkey virus matrix protein and artificial phospholipid membrane.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1717, doi. 10.1002/prot.25156

By:

Junková, P.;
Prchal, J.;
Spiwok, V.;
Pleskot, R.;
Kadlec, J.;
Krásný, L.;
Hynek, R.;
Hrabal, R.;
Ruml, T.

Publication type:

Article

Structure-based classification of FAD binding sites: A comparative study of structural alignment tools.

Published in:

Proteins, 2016, v. 84, n. 11, p. 1728, doi. 10.1002/prot.25158

By:

Garma, Leonardo D.;
Medina, Milagros;
Juffer, André H.

Publication type:

Article

Cover Image, Volume 84, Issue 11.

Published in:

Proteins, 2016, v. 84, n. 11, p. C1, doi. 10.1002/prot.25170

By:

Lu, Cheng;
Stock, Gerhard;
Knecht, Volker

Publication type:

Article

Cover Image, Volume 84, Issue 11.

Published in:

Proteins, 2016, v. 84, n. 11, p. C4, doi. 10.1002/prot.25187

By:

Matute, Ricardo A.;
Yoon, Hanwool;
Warshel, Arieh

Publication type:

Article

Issue Information - Table of Content.

Published in:: Proteins, 2016, v. 84, n. 10, p. 1337, doi. 10.1002/prot.24904
Publication type:: Article

Issue Information - Forthcoming.

Published in:: Proteins, 2016, v. 84, n. 10, p. 1564, doi. 10.1002/prot.24906
Publication type:: Article

Mutation design of a thermophilic Rubisco based on three-dimensional structure enhances its activity at ambient temperature.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1339, doi. 10.1002/prot.25080

By:

Fujihashi, Masahiro;
Nishitani, Yuichi;
Kiriyama, Tomohiro;
Aono, Riku;
Sato, Takaaki;
Takai, Tomoyuki;
Tagashira, Kenta;
Fukuda, Wakao;
Atomi, Haruyuki;
Imanaka, Tadayuki;
Miki, Kunio

Publication type:

Article

Dowser++, a new method of hydrating protein structures.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1347, doi. 10.1002/prot.25081

By:

Morozenko, A.;
Stuchebrukhov, A. A.

Publication type:

Article

Artificial proteins as allosteric modulators of PDZ3 and SH3 in two-domain constructs: A computational characterization of novel chimeric proteins.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1358, doi. 10.1002/prot.25082

By:

Kirubakaran, Palani;
Pfeiferová, Lucie;
Boušová, Kristýna;
Bednarova, Lucie;
Obšilová, Veronika;
Vondrášek, Jiří

Publication type:

Article

Structural characterization of the heme-based oxygen sensor, AfGcHK, its interactions with the cognate response regulator, and their combined mechanism of action in a bacterial two-component signaling system.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1375, doi. 10.1002/prot.25083

By:

Stranava, Martin;
Martínek, Václav;
Man, Petr;
Fojtikova, Veronika;
Kavan, Daniel;
Vaněk, Ondřej;
Shimizu, Toru;
Martinkova, Marketa

Publication type:

Article

BiPPred: Combined sequence- and structure-based prediction of peptide binding to the Hsp70 chaperone BiP.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1390, doi. 10.1002/prot.25084

By:

Schneider, Markus;
Rosam, Mathias;
Glaser, Manuel;
Patronov, Atanas;
Shah, Harpreet;
Back, Katrin Christiane;
Daake, Marina Angelika;
Buchner, Johannes;
Antes, Iris

Publication type:

Article

Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1558, doi. 10.1002/prot.25085

By:

Priyanka, Anu;
Solanki, Vipul;
Parkesh, Raman;
Thakur, Krishan Gopal

Publication type:

Article

Great interactions: How binding incorrect partners can teach us about protein recognition and function.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1408, doi. 10.1002/prot.25086

By:

Vamparys, Lydie;
Laurent, Benoist;
Carbone, Alessandra;
Sacquin‐Mora, Sophie

Publication type:

Article

Characterization of the structure and catalytic activity of Legionella pneumophila VipF.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1422, doi. 10.1002/prot.25087

By:

Young, Byron H.;
Caldwell, Tracy A.;
McKenzie, Aidan M.;
Kokhan, Oleksandr;
Berndsen, Christopher E.

Publication type:

Article

Potential DNA binding and nuclease functions of ComEC domains characterized in silico.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1431, doi. 10.1002/prot.25088

By:

Baker, James A.;
Simkovic, Felix;
Taylor, Helen M.C.;
Rigden, Daniel J.

Publication type:

Article