Works matching IS 08873585 AND DT 2014 AND VI 82 AND IP 9

Results: 50

Bridging between normal mode analysis and elastic network models.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2157, doi. 10.1002/prot.24571

By:

Na, Hyuntae;
Song, Guang

Publication type:

Article

Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1884, doi. 10.1002/prot.24542

By:

Kalyoncu, Sibel;
Hyun, Jeongmin;
Pai, Jennifer C.;
Johnson, Jennifer L.;
Entzminger, Kevin;
Jain, Avni;
Heaner, David P.;
Morales, Ivan A.;
Truskett, Thomas M.;
Maynard, Jennifer A.;
Lieberman, Raquel L.

Publication type:

Article

Why is the biological hydrophobicity scale more accurate than earlier experimental hydrophobicity scales?

Published in:

Proteins, 2014, v. 82, n. 9, p. 2190, doi. 10.1002/prot.24582

By:

Peters, Christoph;
Elofsson, Arne

Publication type:

Article

Essential function of the N-termini tails of the proteasome for the gating mechanism revealed by molecular dynamics simulations.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1985, doi. 10.1002/prot.24553

By:

Ishida, Hisashi

Publication type:

Article

Feature selection and classification of protein-protein complexes based on their binding affinities using machine learning approaches.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2088, doi. 10.1002/prot.24564

By:

Yugandhar, K.;
Gromiha, M. Michael

Publication type:

Article

Structural conservation of the B subunit in the ammonia monooxygenase/particulate methane monooxygenase superfamily.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2263, doi. 10.1002/prot.24535

By:

Lawton, Thomas J.;
Ham, Jungwha;
Sun, Tianlin;
Rosenzweig, Amy C.

Publication type:

Article

Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1924, doi. 10.1002/prot.24546

By:

Kishimoto, Asako;
Kita, Akiko;
Ishibashi, Takuya;
Tomita, Hiroya;
Yokooji, Yuusuke;
Imanaka, Tadayuki;
Atomi, Haruyuki;
Miki, Kunio

Publication type:

Article

Kinetics of protein fibrillation controlled by fibril elongation.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2229, doi. 10.1002/prot.24586

By:

Kashchiev, Dimo

Publication type:

Article

High resolution crystal structure of Clostridium propionicum β-alanyl-CoA:ammonia lyase, a new member of the 'hot dog fold' protein superfamily.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2041, doi. 10.1002/prot.24557

By:

Heine, Andreas;
Herrmann, Gloria;
Selmer, Thorsten;
Terwesten, Felix;
Buckel, Wolfgang;
Reuter, Klaus

Publication type:

Article

Crystal structure of a Chlamydomonas reinhardtii flagellar RabGAP TBC-domain at 1.8 Å resolution.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2282, doi. 10.1002/prot.24597

By:

Bhogaraju, Sagar;
Lorentzen, Esben

Publication type:

Article

A critical survey of average distances between catalytic carboxyl groups in glycoside hydrolases.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1747, doi. 10.1002/prot.24528

By:

Mhlongo, Ndumiso N.;
Skelton, Adam A.;
Kruger, Gert;
Soliman, Mahmoud E.S.;
Williams, Ian H.

Publication type:

Article

The influenza fusion peptide promotes lipid polar head intrusion through hydrogen bonding with phosphates and N-terminal membrane insertion depth.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2118, doi. 10.1002/prot.24568

By:

Légaré, Sébastien;
Lagüe, Patrick

Publication type:

Article

Identification of the bona fide DHDPS from a common plant pathogen.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1869, doi. 10.1002/prot.24539

By:

Atkinson, Sarah C.;
Hor, Lilian;
Dogovski, Con;
Dobson, Renwick C. J.;
Perugini, Matthew A.

Publication type:

Article

Functional and structural studies of pullulanase from Anoxybacillus sp. LM18-11.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1685, doi. 10.1002/prot.24498

By:

Xu, Jianyong;
Ren, Feifei;
Huang, Chun-Hsiang;
Zheng, Yingying;
Zhen, Jie;
Sun, Hong;
Ko, Tzu-Ping;
He, Miao;
Chen, Chun-Chi;
Chan, Hsiu-Chien;
Guo, Rey-Ting;
Song, Hui;
Ma, Yanhe

Publication type:

Article

Incorporating replacement free energy of binding-site waters in molecular docking.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1765, doi. 10.1002/prot.24530

By:

Sun, Hanzi;
Zhao, Lifeng;
Peng, Shiming;
Huang, Niu

Publication type:

Article

Comparative analysis of sequence covariation methods to mine evolutionary hubs: Examples from selected GPCR families.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2141, doi. 10.1002/prot.24570

By:

Pelé, Julien;
Moreau, Matthieu;
Abdi, Hervé;
Rodien, Patrice;
Castel, Hélène;
Chabbert, Marie

Publication type:

Article

Assessment of protein side-chain conformation prediction methods in different residue environments.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1971, doi. 10.1002/prot.24552

By:

Peterson, Lenna X.;
Kang, Xuejiao;
Kihara, Daisuke

Publication type:

Article

A simple contact mapping algorithm for identifying potential peptide mimetics in protein-protein interaction partners.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2253, doi. 10.1002/prot.24592

By:

Krall, Alex;
Brunn, Jonathan;
Kankanala, Spandana;
Peters, Michael H.

Publication type:

Article

Homologous steroid receptors assemble at identical promoter architectures with unique energetics of cooperativity.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2078, doi. 10.1002/prot.24563

By:

Connaghan, Keith D.;
Yang, Qin;
Miura, Michael T.;
Moody, Amie D.;
Bain, David L.

Publication type:

Article

Detecting protein atom correlations using correlation of probability of recurrence.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2180, doi. 10.1002/prot.24574

By:

Fataftah, Hiba;
Karain, Wael

Publication type:

Article

Influence of a heptad repeat stutter on the pH-dependent conformational behavior of the central coiled-coil from influenza hemagglutinin HA2.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2220, doi. 10.1002/prot.24585

By:

Higgins, Chelsea D.;
Malashkevich, Vladimir N.;
Almo, Steven C.;
Lai, Jonathan R.

Publication type:

Article

Exploring the multiscale signaling behavior of phototropin1 from Chlamydomonas reinhardtii using a full-residue space kinetic Monte Carlo molecular dynamics technique.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2018, doi. 10.1002/prot.24556

By:

Peter, Emanuel;
Dick, Bernhard;
Stambolic, Ivan;
Baeurle, Stephan A.

Publication type:

Article

Cation-π, amino-π, π-π, and H-bond interactions stabilize antigen-antibody interfaces.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1734, doi. 10.1002/prot.24527

By:

Dalkas, Georgios A.;
Teheux, Fabian;
Kwasigroch, Jean Marc;
Rooman, Marianne

Publication type:

Article

WeFold: A coopetition for protein structure prediction.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1850, doi. 10.1002/prot.24538

By:

Khoury, George A.;
Liwo, Adam;
Khatib, Firas;
Zhou, Hongyi;
Chopra, Gaurav;
Bacardit, Jaume;
Bortot, Leandro O.;
Faccioli, Rodrigo A.;
Deng, Xin;
He, Yi;
Krupa, Pawel;
Li, Jilong;
Mozolewska, Magdalena A.;
Sieradzan, Adam K.;
Smadbeck, James;
Wirecki, Tomasz;
Cooper, Seth;
Flatten, Jeff;
Xu, Kefan;
Baker, David

Publication type:

Article

An integrated approach for thermal stabilization of a mesophilic adenylate kinase.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1947, doi. 10.1002/prot.24549

By:

Moon, Sojin;
Jung, Du-kyo;
Phillips, George N.;
Bae, Euiyoung

Publication type:

Article

Unbinding free energy of acetylcholinesterase bound oxime drugs along the gorge pathway from metadynamics-umbrella sampling investigation.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1799, doi. 10.1002/prot.24533

By:

Pathak, Arup K.;
Bandyopadhyay, Tusar

Publication type:

Article

Multiple conformational states and gate opening of outer membrane protein TolC revealed by molecular dynamics simulations.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2169, doi. 10.1002/prot.24573

By:

Wang, Beibei;
Weng, Jingwei;
Wang, Wenning

Publication type:

Article

Molecular dynamics simulation of the phosphorylation-induced conformational changes of a tau peptide fragment.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1907, doi. 10.1002/prot.24544

By:

Lyons, Albert J.;
Gandhi, Neha S.;
Mancera, Ricardo L.

Publication type:

Article

Importance of polarization effect in the study of metalloproteins: Application of polarized protein specific charge scheme in predicting the reduction potential of azurin.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2209, doi. 10.1002/prot.24584

By:

Wei, Caiyi;
Lazim, Raudah;
Zhang, Dawei

Publication type:

Article

Protein side-chain modeling with a protein-dependent optimized rotamer library.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2000, doi. 10.1002/prot.24555

By:

Francis-Lyon, Patricia;
Koehl, Patrice

Publication type:

Article

Structural and sequence features of two residue turns in beta-hairpins.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1721, doi. 10.1002/prot.24526

By:

Madan, Bharat;
Seo, Sung Yong;
Lee, Sun-Gu

Publication type:

Article

Banding 2of NMR-derived methyl order parameters: Implications for protein dynamics.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2106, doi. 10.1002/prot.24566

By:

Sharp, Kim A.;
Kasinath, Vignesh;
Wand, A. Joshua

Publication type:

Article

BetaVoid: Molecular voids via beta-complexes and Voronoi diagrams.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1829, doi. 10.1002/prot.24537

By:

Kim, Jae-Kwan;
Cho, Youngsong;
Laskowski, Roman A;
Ryu, Seong Eon;
Sugihara, Kokichi;
Kim, Deok-Soo

Publication type:

Article

Crystal structure of the Mycobacterium tuberculosis phosphate binding protein PstS3.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2268, doi. 10.1002/prot.24548

By:

Ferraris, Davide M.;
Spallek, Ralf;
Oehlmann, Wulf;
Singh, Mahavir;
Rizzi, Menico

Publication type:

Article

Helix kinks are equally prevalent in soluble and membrane proteins.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1960, doi. 10.1002/prot.24550

By:

Wilman, Henry R.;
Shi, Jiye;
Deane, Charlotte M.

Publication type:

Article

Rebuilding a macromolecular membrane complex at the atomic scale: Case of the Kir6.2 potassium channel coupled to the muscarinic acetylcholine receptor M2.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1694, doi. 10.1002/prot.24521

By:

Sapay, Nicolas;
Estrada-Mondragon, Argel;
Moreau, Christophe;
Vivaudou, Michel;
Crouzy, Serge

Publication type:

Article

Structural and functional studies of a trans-acyltransferase polyketide assembly line enzyme that catalyzes stereoselective α- and β-ketoreduction.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2067, doi. 10.1002/prot.24561

By:

Piasecki, Shawn K.;
Zheng, Jianting;
Axelrod, Abram J.;
E. Detelich, Madeline;
Keatinge-Clay, Adrian T.

Publication type:

Article

Temperature and pressure effects on C112S azurin: Volume, expansivity, and flexibility changes.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1787, doi. 10.1002/prot.24532

By:

Cioni, Patrizia;
Gabellieri, Edi;
Marchal, Stéphane;
Lange, Reinhard

Publication type:

Article

Crystal structure of JHP933 from Helicobacter pylori J99 shows two-domain architecture with a DUF1814 family nucleotidyltransferase domain and a helical bundle domain.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2275, doi. 10.1002/prot.24572

By:

Yoon, Ji Young;
Lee, Sang Jae;
Kim, Do Jin;
Lee, Bong-Jin;
Yang, Jin Kuk;
Suh, Se Won

Publication type:

Article

Structure-guided approach for detecting large domain inserts in protein sequences as illustrated using the haloacid dehalogenase superfamily.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1896, doi. 10.1002/prot.24543

By:

Pandya, Chetanya;
Dunaway-Mariano, Debra;
Xia, Yu;
Allen, Karen N.

Publication type:

Article

Structural studies of bovine, equine, and leporine serum albumin complexes with naproxen.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2199, doi. 10.1002/prot.24583

By:

Bujacz, Anna;
Zielinski, Kamil;
Sekula, Bartosz

Publication type:

Article

Crystal structure of DszC from Rhodococcus sp. XP at 1.79 Å.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1708, doi. 10.1002/prot.24525

By:

Liu, Shiheng;
Zhang, Conggang;
Su, Tiantian;
Wei, Tiandi;
Zhu, Deyu;
Wang, Kang;
Huang, Yan;
Dong, Yuhui;
Yin, Kun;
Xu, Sujuan;
Xu, Ping;
Gu, Lichuan

Publication type:

Article

Multiple Gaussian network modes alignment reveals dynamically variable regions: The hemoglobin case.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2097, doi. 10.1002/prot.24565

By:

Davis, Meir;
Tobi, Dror

Publication type:

Article

Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1819, doi. 10.1002/prot.24536

By:

Geertz-Hansen, Henrik Marcus;
Blom, Nikolaj;
Feist, Adam M.;
Brunak, Søren;
Petersen, Thomas Nordahl

Publication type:

Article

ProDomAs, protein domain assignment algorithm using center-based clustering and independent dominating set.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1937, doi. 10.1002/prot.24547

By:

Ansari, Elnaz Saberi;
Eslahchi, Changiz;
Pezeshk, Hamid;
Sadeghi, Mehdi

Publication type:

Article

Improving fragment quality for de novo structure prediction.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2240, doi. 10.1002/prot.24587

By:

Shrestha, Rojan;
Zhang, Kam Y. J.

Publication type:

Article

Substrate-mediated control of the conformation of an ancillary domain delivers a competent catalytic site for N-acetylneuraminic acid synthase.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2054, doi. 10.1002/prot.24558

By:

Joseph, Dmitri D. A.;
Jiao, Wanting;
Kessans, Sarah A.;
Parker, Emily J.

Publication type:

Article

A novel TctA citrate transporter from an activated sludge metagenome: Structural and mechanistic predictions for the TTT family.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1756, doi. 10.1002/prot.24529

By:

Batista-García, Ramón Alberto;
Sánchez-Reyes, Ayixon;
Millán-Pacheco, César;
González-Zuñiga, Víctor Manuel;
Juárez, Soledad;
Folch-Mallol, Jorge Luis;
Pastor, Nina

Publication type:

Article

An amino acid code for β-sheet packing structure.

Published in:

Proteins, 2014, v. 82, n. 9, p. 2128, doi. 10.1002/prot.24569

By:

Joo, Hyun;
Tsai, Jerry

Publication type:

Article

Mode coupling points to functionally important residues in myosin II.

Published in:

Proteins, 2014, v. 82, n. 9, p. 1777, doi. 10.1002/prot.24531

By:

Varol, Onur;
Yuret, Deniz;
Erman, Burak;
Kabakçıoğlu, Alkan

Publication type:

Article