Works matching IS 08873585 AND DT 2014 AND VI 82 AND IP 8

Results: 12

Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1611, doi. 10.1002/prot.24534

By:

Weitzner, Brian D.;
Kuroda, Daisuke;
Marze, Nicholas;
Xu, Jianqing;
Gray, Jeffrey J.

Publication type:

Article

Structure and specificity of an antibody targeting a proteolytically cleaved IgG hinge.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1656, doi. 10.1002/prot.24545

By:

Malia, Thomas J.;
Teplyakov, Alexey;
Brezski, Randall J.;
Luo, Jinquan;
Kinder, Michelle;
Sweet, Raymond W.;
Almagro, Juan C.;
Jordan, Robert E.;
Gilliland, Gary L.

Publication type:

Article

Second antibody modeling assessment (AMA-II).

Published in:

Proteins, 2014, v. 82, n. 8, p. 1553, doi. 10.1002/prot.24567

By:

Almagro, Juan C.;
Teplyakov, Alexey;
Luo, Jinquan;
Sweet, Raymond W.;
Kodangattil, Sreekumar;
Hernandez‐Guzman, Francisco;
Gilliland, Gary L.

Publication type:

Article

Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1646, doi. 10.1002/prot.24551

By:

Zhu, Kai;
Day, Tyler;
Warshaviak, Dora;
Murrett, Colleen;
Friesner, Richard;
Pearlman, David

Publication type:

Article

High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1624, doi. 10.1002/prot.24591

By:

Shirai, Hiroki;
Ikeda, Kazuyoshi;
Yamashita, Kazuo;
Tsuchiya, Yuko;
Sarmiento, Jamica;
Liang, Shide;
Morokata, Tatsuaki;
Mizuguchi, Kenji;
Higo, Junichi;
Standley, Daron M.;
Nakamura, Haruki

Publication type:

Article

Structural evidence for a constrained conformation of short CDR-L3 in antibodies.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1679, doi. 10.1002/prot.24522

By:

Teplyakov, Alexey;
Obmolova, Galina;
Malia, Thomas J.;
Luo, Jinquan;
Gilliland, Gary L.

Publication type:

Article

Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1636, doi. 10.1002/prot.24595

By:

Berrondo, Monica;
Kaufmann, Susana;
Berrondo, Manuel

Publication type:

Article

Canonical structures of short CDR-L3 in antibodies.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1668, doi. 10.1002/prot.24559

By:

Teplyakov, Alexey;
Gilliland, Gary L.

Publication type:

Article

Crystal structure determination of anti-DNA Fab A52.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1674, doi. 10.1002/prot.24514

By:

Stanfield, Robyn L.;
Eilat, Dan

Publication type:

Article

Antibody modeling assessment II. Structures and models.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1563, doi. 10.1002/prot.24554

By:

Teplyakov, Alexey;
Luo, Jinquan;
Obmolova, Galina;
Malia, Thomas J.;
Sweet, Raymond;
Stanfield, Robyn L.;
Kodangattil, Sreekumar;
Almagro, Juan Carlos;
Gilliland, Gary L.

Publication type:

Article

Assessment of fully automated antibody homology modeling protocols in molecular operating environment.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1599, doi. 10.1002/prot.24576

By:

Maier, Johannes K. X.;
Labute, Paul

Publication type:

Article

Automated antibody structure prediction using Accelrys tools: Results and best practices.

Published in:

Proteins, 2014, v. 82, n. 8, p. 1583, doi. 10.1002/prot.24604

By:

Fasnacht, Marc;
Butenhof, Ken;
Goupil‐Lamy, Anne;
Hernandez‐Guzman, Francisco;
Huang, Hongwei;
Yan, Lisa

Publication type:

Article