Works matching IS 08873585 AND DT 2014 AND VI 82 AND IP 7

Results: 41

Crystal structures of the archaeal UDP-GlcNAc 2-epimerase from Methanocaldococcus jannaschii reveal a conformational change induced by UDP-GlcNAc.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1519, doi. 10.1002/prot.24516

By:

Chen, Sheng‐Chia;
Huang, Chi‐Hung;
Shin Yang, Chia;
Liu, Jai‐Shin;
Kuan, Shu‐Min;
Chen, Yeh

Publication type:

Article

An effective Coarse-grained model for biological simulations: Recent refinements and validations.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1168, doi. 10.1002/prot.24482

By:

Vicatos, Spyridon;
Rychkova, Anna;
Mukherjee, Shayantani;
Warshel, Arieh

Publication type:

Article

Unfolding of beta-lactoglobulin on the surface of polystyrene nanoparticles: Experimental and computational approaches.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1272, doi. 10.1002/prot.24493

By:

Miriani, Matteo;
Eberini, Ivano;
Iametti, Stefania;
Ferranti, Pasquale;
Sensi, Cristina;
Bonomi, Francesco

Publication type:

Article

Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1549, doi. 10.1002/prot.24578

By:

Pawel, Gniewek;
Leelananda, Sumudu P.;
Andrzej, Kolinski;
Jernigan, Robert L.;
Andrzej, Kloczkowski

Publication type:

Article

Atomistic mechanisms of huntingtin N-terminal fragment insertion on a phospholipid bilayer revealed by molecular dynamics simulations.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1409, doi. 10.1002/prot.24509

By:

Côté, Sébastien;
Wei, Guanghong;
Mousseau, Normand

Publication type:

Article

Accurate prediction of interfacial residues in two-domain proteins using evolutionary information: Implications for three-dimensional modeling.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1219, doi. 10.1002/prot.24486

By:

Bhaskara, Ramachandra M.;
Padhi, Amrita;
Srinivasan, Narayanaswamy

Publication type:

Article

Characterization of the divalent metal binding site of bacterial polysaccharide deacetylase using crystallography and quantum chemical calculations.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1311, doi. 10.1002/prot.24497

By:

Munan Shaik, Md;
Bhattacharjee, Nicholus;
Bhattacharjee, Anirban;
Field, Martin J.;
Zanotti, Giuseppe

Publication type:

Article

PAIRpred: Partner-specific prediction of interacting residues from sequence and structure.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1142, doi. 10.1002/prot.24479

By:

Afsar Minhas, Fayyaz ul Amir;
Geiss, Brian J.;
Ben‐Hur, Asa

Publication type:

Article

Structural basis of conformational variance in phosphorylated and non-phosphorylated states of PKCβII.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1332, doi. 10.1002/prot.24500

By:

Grewal, Baljinder K.;
Krishnan, R. Venkata;
Sobhia, M. Elizabeth

Publication type:

Article

Small-angle X-ray scattering of BAMLET at pH 12: A complex of α-lactalbumin and oleic acid.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1400, doi. 10.1002/prot.24508

By:

Rath, Emma M.;
Duff, Anthony P.;
Håkansson, Anders P.;
Knott, Robert B.;
Church, W. Bret

Publication type:

Article

Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1428, doi. 10.1002/prot.24511

By:

Kaushik, Swati;
Etchebest, Catherine;
Sowdhamini, Ramanathan

Publication type:

Article

Crystal structures of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) reveal a common domain-swapped dimer.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1512, doi. 10.1002/prot.24504

By:

Nagae, Masamichi;
Ikeda, Akemi;
Kitago, Yu;
Matsumoto, Naoki;
Yamamoto, Kazuo;
Yamaguchi, Yoshiki

Publication type:

Article

Impact of sequence on the molecular assembly of short amyloid peptides.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1469, doi. 10.1002/prot.24515

By:

Wagoner, Victoria A.;
Cheon, Mookyung;
Chang, Iksoo;
Hall, Carol K.

Publication type:

Article

Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1258, doi. 10.1002/prot.24492

By:

Sato, Nozomi;
Ishii, Shoko;
Sugimoto, Hiroshi;
Hino, Tomoya;
Fukumori, Yoshihiro;
Sako, Yoshihiko;
Shiro, Yoshitsugu;
Tosha, Takehiko

Publication type:

Article

Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1551, doi. 10.1002/prot.24580

By:

Hirofumi, Nakagawa;
Mitsuo, Kuratani;
Sakurako, Goto‐Ito;
Takuhiro, Ito;
Kazushige, Katsura;
Takaho, Terada;
Mikako, Shirouzu;
Shun‐ichi, Sekine;
Naoki, Shigi;
Shigeyuki, Yokoyama

Publication type:

Article

Cation-π interactions of methylated ammonium ions: A quantum mechanical study.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1494, doi. 10.1002/prot.24519

By:

Rapp, Chaya;
Goldberger, Elizabeth;
Tishbi, Nasim;
Kirshenbaum, Rachel

Publication type:

Article

Structure-guided analysis of catalytic specificity of the abundantly secreted chitosanase SACTE_5457 from Streptomyces sp. SirexAA-E.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1245, doi. 10.1002/prot.24491

By:

Takasuka, Taichi E.;
Bianchetti, Christopher M.;
Tobimatsu, Yuki;
Bergeman, Lai F.;
Ralph, John;
Fox, Brian G.

Publication type:

Article

Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1301, doi. 10.1002/prot.24496

By:

Fujihashi, Masahiro;
Nakatani, Taiga;
Hirooka, Kazutake;
Matsuoka, Hiroshi;
Fujita, Yasutaro;
Miki, Kunio

Publication type:

Article

Packing interface energetics in different crystal forms of the λ Cro dimer.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1128, doi. 10.1002/prot.24478

By:

Ahlstrom, Logan S.;
Miyashita, Osamu

Publication type:

Article

Engineering a soluble parathyroid hormone GPCR mimetic.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1370, doi. 10.1002/prot.24503

By:

Audu, Christopher O.;
Plati, Jessica J.;
Pellegrini, Maria;
Mierke, Dale F.

Publication type:

Article

The minimal α-crystallin domain of Mj Hsp16.5 is functional at non-heat-shock conditions.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1156, doi. 10.1002/prot.24480

By:

Xi, Dong;
Wei, Ping;
Zhang, Changsheng;
Lai, Luhua

Publication type:

Article

The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1210, doi. 10.1002/prot.24485

By:

Lohman, Jeremy R.;
Ma, Ming;
Cuff, Marianne E.;
Bigelow, Lance;
Bearden, Jessica;
Babnigg, Gyorgy;
Joachimiak, Andrzej;
Phillips, George N.;
Shen, Ben

Publication type:

Article

Local sequence of protein β-strands influences twist and bend angles.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1484, doi. 10.1002/prot.24518

By:

Fujiwara, Kazuo;
Ebisawa, Shinichi;
Watanabe, Yuka;
Toda, Hiromi;
Ikeguchi, Masamichi

Publication type:

Article

Murine norovirus protein NS1/2 aspartate to glutamate mutation, sufficient for persistence, reorients side chain of surface exposed tryptophan within a novel structured domain.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1200, doi. 10.1002/prot.24484

By:

Borin, Brendan N.;
Tang, Wei;
Nice, Timothy J.;
McCune, Broc T.;
Virgin, Herbert W.;
Krezel, Andrzej M.

Publication type:

Article

Constant pH molecular dynamics of proteins in explicit solvent with proton tautomerism.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1319, doi. 10.1002/prot.24499

By:

Goh, Garrett B.;
Hulbert, Benjamin S.;
Zhou, Huiqing;
Brooks, Charles L.

Publication type:

Article

PRIMSIPLR: Prediction of inner-membrane situated pore-lining residues for alpha-helical transmembrane proteins.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1503, doi. 10.1002/prot.24520

By:

Nguyen, Duy;
Helms, Volkhard;
Lee, Po‐Hsien

Publication type:

Article

Molecular physiology of the tensin brotherhood of integrin adaptor proteins.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1113, doi. 10.1002/prot.24560

By:

Haynie, Donald T.

Publication type:

Article

C-terminal β-strand swapping in a consensus-derived fibronectin Type III scaffold.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1359, doi. 10.1002/prot.24502

By:

Teplyakov, Alexey;
Obmolova, Galina;
Malia, Thomas J.;
Luo, Jinquan;
Jacobs, Steven A.;
Chan, Winnie;
Domingo, Derrick;
Baker, Audrey;
O'Neil, Karyn T.;
Gilliland, Gary L.

Publication type:

Article

Free energetics of rigid body association of ubiquitin binding domains: A biochemical model for binding mediated by hydrophobic interaction.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1453, doi. 10.1002/prot.24513

By:

Cui, Di;
Ou, Shuching;
Patel, Sandeep

Publication type:

Article

Structural characterization of a new N-substituted pantothenamide bound to pantothenate kinases from Klebsiella pneumoniae and Staphylococcus aureus.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1542, doi. 10.1002/prot.24524

By:

Hughes, Scott J.;
Antoshchenko, Tetyana;
Kim, Kyung Phil;
Smil, David;
Park, Hee‐Won

Publication type:

Article

Validating computer simulations of enantioselective catalysis; reproducing the large steric and entropic contributions in Candida Antarctica lipase B.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1387, doi. 10.1002/prot.24506

By:

Schopf, Patrick;
Warshel, Arieh

Publication type:

Article

N-terminal β-strand swapping in a consensus-derived alternative scaffold driven by stabilizing hydrophobic interactions.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1527, doi. 10.1002/prot.24517

By:

Luo, Jinquan;
Teplyakov, Alexey;
Obmolova, Galina;
Malia, Thomas J.;
Chan, Winnie;
Jacobs, Steven A.;
O'Neil, Karyn T.;
Gilliland, Gary L.

Publication type:

Article

Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1186, doi. 10.1002/prot.24483

By:

Linden, Marx Gomes;
Ferreira, Diogo César;
Oliveira, Leandro Cristante;
Onuchic, José N.;
Pereira de Araújo, Antônio F.

Publication type:

Article

Discovery of multiple interacting partners of gankyrin, a proteasomal chaperone and an oncoprotein-Evidence for a common hot spot site at the interface and its functional relevance.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1283, doi. 10.1002/prot.24494

By:

Nanaware, Padma P.;
Ramteke, Manoj P.;
Somavarapu, Arun K.;
Venkatraman, Prasanna

Publication type:

Article

Detection of peptide-binding sites on protein surfaces: The first step toward the modeling and targeting of peptide-mediated interactions.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1550, doi. 10.1002/prot.24579

By:

Assaf, Lavi;
Chi Ho, Ngan;
Dana, Movshovitz‐Attias;
Tanggis, Bohnuud;
Christine, Yueh;
Dmitri, Beglov;
Ora, Schueler‐Furman;
Dima, Kozakov

Publication type:

Article

Crystal structure of Plasmodium vivax FK506-binding protein 25 reveals conformational changes responsible for its noncanonical activity.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1235, doi. 10.1002/prot.24487

By:

Rajan, Sreekanth;
Austin, David;
Harikishore, Amaravadhi;
Nguyen, Quoc Toan;
Baek, Kwanghee;
Yoon, Ho Sup

Publication type:

Article

Sparsely populated residue conformations in protein structures: Revisiting 'experimental' Ramachandran maps.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1101, doi. 10.1002/prot.24384

By:

Kalmankar, Neha V.;
Ramakrishnan, C.;
Balaram, P.

Publication type:

Article

Protonation states of active-site lysines of penicillin-binding protein 6 from Escherichia coli and the mechanistic implications.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1348, doi. 10.1002/prot.24501

By:

Kumarasiri, Malika;
Zhang, Weilie;
Shi, Qicun;
Fisher, Jed F.;
Mobashery, Shahriar

Publication type:

Article

Benchmarking protein-protein interface predictions: Why you should care about protein size.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1444, doi. 10.1002/prot.24512

By:

Martin, Juliette

Publication type:

Article

Structural insights into FRS2α PTB domain recognition by neurotrophin receptor TrkB.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1534, doi. 10.1002/prot.24523

By:

Zeng, Lei;
Kuti, Miklos;
Mujtaba, Shiraz;
Zhou, Ming‐Ming

Publication type:

Article

All-atom and coarse-grained simulations of the forced unfolding pathways of the SNARE complex.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1376, doi. 10.1002/prot.24505

By:

Zheng, Wenjun

Publication type:

Article