Works matching IS 08873585 AND DT 2014 AND VI 82 AND IP 10

Results: 51

Insights into a highly conserved network of hydrogen bonds in the agonist binding site of nicotinic acetylcholine receptors: A structural and theoretical study.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2303, doi. 10.1002/prot.24589

By:

Atkinson, Alexandre;
Graton, Jérôme;
Questel, Jean‐Yves

Publication type:

Article

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2879, doi. 10.1002/prot.24651

By:

Tsuda, Kengo;
Kuwasako, Kanako;
Nagata, Takashi;
Takahashi, Mari;
Kigawa, Takanori;
Kobayashi, Naohiro;
Güntert, Peter;
Shirouzu, Mikako;
Yokoyama, Shigeyuki;
Muto, Yutaka

Publication type:

Article

Improving the orientation-dependent statistical potential using a reference state.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2383, doi. 10.1002/prot.24600

By:

Liu, Yufeng;
Zeng, Jianyang;
Gong, Haipeng

Publication type:

Article

Exploring the free energy landscape of a model β-hairpin peptide and its isoform.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2394, doi. 10.1002/prot.24601

By:

Narayanan, Chitra;
Dias, Cristiano L.

Publication type:

Article

Network mapping among the functional domains of Chikungunya virus nonstructural proteins.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2403, doi. 10.1002/prot.24602

By:

Rana, Jyoti;
Rajasekharan, Sreejith;
Gulati, Sahil;
Dudha, Namrata;
Gupta, Amita;
Chaudhary, Vijay Kumar;
Gupta, Sanjay

Publication type:

Article

Exploring the early stages of the pH-induced conformational change of influenza hemagglutinin.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2412, doi. 10.1002/prot.24606

By:

Zhou, Yu;
Wu, Chao;
Zhao, Lifeng;
Huang, Niu

Publication type:

Article

Binding site multiplicity with fatty acid ligands: Implications for the regulation of PKR kinase autophosphorylation with palmitate.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2429, doi. 10.1002/prot.24607

By:

Fang, Liang;
Cho, Hyun Ju;
Chan, Christina;
Feig, Michael

Publication type:

Article

Crystal structure of the secreted protein HP1454 from the human pathogen Helicobacter pylori.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2868, doi. 10.1002/prot.24608

By:

Quarantini, Sandra;
Cendron, Laura;
Zanotti, Giuseppe

Publication type:

Article

De novo inference of protein function from coarse-grained dynamics.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2443, doi. 10.1002/prot.24609

By:

Bhadra, Pratiti;
Pal, Debnath

Publication type:

Article

Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2565, doi. 10.1002/prot.24620

By:

Li, Zhixiu;
Yang, Yuedong;
Faraggi, Eshel;
Zhan, Jian;
Zhou, Yaoqi

Publication type:

Article

Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2574, doi. 10.1002/prot.24621

By:

Zhou, Alice Qinhua;
O'Hern, Corey S.;
Regan, Lynne

Publication type:

Article

Euclidean sections of protein conformation space and their implications in dimensionality reduction.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2585, doi. 10.1002/prot.24622

By:

Duan, Mojie;
Li, Minghai;
Han, Li;
Huo, Shuanghong

Publication type:

Article

Functional evolution of PLP-dependent enzymes based on active-site structural similarities.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2597, doi. 10.1002/prot.24624

By:

Catazaro, Jonathan;
Caprez, Adam;
Guru, Ashu;
Swanson, David;
Powers, Robert

Publication type:

Article

Molecular simulations of β-lactoglobulin complexed with fatty acids reveal the structural basis of ligand affinity to internal and possible external binding sites.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2609, doi. 10.1002/prot.24625

By:

Evoli, Stefania;
Guzzi, Rita;
Rizzuti, Bruno

Publication type:

Article

Increasing stability of antibody via antibody engineering: Stability engineering on an anti-hVEGF.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2620, doi. 10.1002/prot.24626

By:

Wang, Shuang;
Liu, Ming;
Zeng, Dadi;
Qiu, Weiyi;
Ma, Pingping;
Yu, Yunzhou;
Chang, Hongyan;
Sun, Zhiwei

Publication type:

Article

Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2631, doi. 10.1002/prot.24627

By:

Moon, Sojin;
Bannen, Ryan M.;
Rutkoski, Thomas J.;
Phillips, George N.;
Bae, Euiyoung

Publication type:

Article

Cytotoxicity of the V ibrio vulnificus MARTX toxin Effector DUF5 is linked to the C2A Subdomain.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2643, doi. 10.1002/prot.24628

By:

Antic, Irena;
Biancucci, Marco;
Satchell, Karla J. F.

Publication type:

Article

Geometrical comparison of two protein structures using Wigner-D functions.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2756, doi. 10.1002/prot.24640

By:

Saberi Fathi, S. M.;
White, Diana T.;
Tuszynski, Jack A.

Publication type:

Article

Computational design of protein antigens that interact with the CDR H3 loop of HIV broadly neutralizing antibody 2F5.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2770, doi. 10.1002/prot.24641

By:

Azoitei, M. L.;
Ban, Y. A.;
Kalyuzhny, O.;
Guenaga, J.;
Schroeter, A.;
Porter, J.;
Wyatt, R.;
Schief, William R.

Publication type:

Article

Computational identification of post-translational modification-based nuclear import regulations by characterizing nuclear localization signal-import receptor interaction.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2783, doi. 10.1002/prot.24642

By:

Lin, Jhih‐Rong;
Liu, Zhonghao;
Hu, Jianjun

Publication type:

Article

Expansion of the APC superfamily of secondary carriers.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2797, doi. 10.1002/prot.24643

By:

Vastermark, Ake;
Wollwage, Simon;
Houle, Michael E.;
Rio, Rita;
Saier, Milton H.

Publication type:

Article

Redesigning the type II' β-turn in green fluorescent protein to type I': Implications for folding kinetics and stability.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2812, doi. 10.1002/prot.24644

By:

Madan, Bharat;
Sokalingam, Sriram;
Raghunathan, Govindan;
Lee, Sun‐Gu

Publication type:

Article

Multiple polymer architectures of human polyhomeotic homolog 3 sterile alpha motif.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2823, doi. 10.1002/prot.24645

By:

Nanyes, David R.;
Junco, Sarah E.;
Taylor, Alexander B.;
Robinson, Angela K.;
Patterson, Nicolle L.;
Shivarajpur, Ambika;
Halloran, Jonathan;
Hale, Seth M.;
Kaur, Yogeet;
Hart, P. John;
Kim, Chongwoo A.

Publication type:

Article

The p66 immature precursor of HIV-1 reverse transcriptase.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2343, doi. 10.1002/prot.24594

By:

Sharaf, Naima G.;
Poliner, Eric;
Slack, Ryan L.;
Christen, Martin T.;
Byeon, In‐Ja L.;
Parniak, Michael A.;
Gronenborn, Angela M.;
Ishima, Rieko

Publication type:

Article

Multivariate sequence analysis reveals additional function impacting residues in the SDR superfamily.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2842, doi. 10.1002/prot.24647

By:

Tiwari, Pratibha;
Singh, Noopur;
Dixit, Aparna;
Choudhury, Devapriya

Publication type:

Article

Crystal structure of a feruloyl esterase belonging to the tannase family: A disulfide bond near a catalytic triad.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2857, doi. 10.1002/prot.24649

By:

Suzuki, Kentaro;
Hori, Akane;
Kawamoto, Kazusa;
Thangudu, Ratna Rajesh;
Ishida, Takuya;
Igarashi, Kiyohiko;
Samejima, Masahiro;
Yamada, Chihaya;
Arakawa, Takatoshi;
Wakagi, Takayoshi;
Koseki, Takuya;
Fushinobu, Shinya

Publication type:

Article

Burial of nonpolar surface area and thermodynamic stabilization of globins as a function of chain elongation.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2318, doi. 10.1002/prot.24590

By:

Jennaro, Theodore S.;
Beaty, Matthew R.;
Kurt‐Yilmaz, Neşe;
Luskin, Benjamin L.;
Cavagnero, Silvia

Publication type:

Article

The recognition of membrane-bound PtdIns3 P by PX domains.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2332, doi. 10.1002/prot.24593

By:

Jia, ZhiGuang;
Ghai, Rajesh;
Collins, Brett M.;
Mark, Alan E.

Publication type:

Article

Conformational transitions driven by pyridoxal-5′-phosphate uptake in the psychrophilic serine hydroxymethyltransferase from P sychromonas ingrahamii.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2831, doi. 10.1002/prot.24646

By:

Angelaccio, Sebastiana;
Dworkowski, Florian;
Bello, Angela;
Milano, Teresa;
Capitani, Guido;
Pascarella, Stefano

Publication type:

Article

Glucose oxidase from Penicillium amagasakiense: Characterization of the transition state of its denaturation from molecular dynamics simulations.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2353, doi. 10.1002/prot.24596

By:

Todde, Guido;
Hovmöller, Sven;
Laaksonen, Aatto;
Mocci, Francesca

Publication type:

Article

The solution structure of full-length dodecameric MCM by SANS and molecular modeling.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2364, doi. 10.1002/prot.24598

By:

Krueger, Susan;
Shin, Jae‐Ho;
Curtis, Joseph E.;
Rubinson, Kenneth A.;
Kelman, Zvi

Publication type:

Article

How the folding rates of two- and multistate proteins depend on the amino acid properties.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2375, doi. 10.1002/prot.24599

By:

Huang, Jitao T.;
Huang, Wei;
Huang, Shanran R.;
Li, Xin

Publication type:

Article

Specificity of a protein-protein interface: Local dynamics direct substrate recognition of effector caspases.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2887, doi. 10.1002/prot.24660

By:

Fuchs, Julian E.;
Grafenstein, Susanne;
Huber, Roland G.;
Wallnoefer, Hannes G.;
Liedl, Klaus R.

Publication type:

Article

RBRDetector: Improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2455, doi. 10.1002/prot.24610

By:

Yang, Xiao‐Xia;
Deng, Zhi‐Luo;
Liu, Rong

Publication type:

Article

Discovery of binding proteins for a protein target using protein-protein docking-based virtual screening.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2472, doi. 10.1002/prot.24611

By:

Zhang, Changsheng;
Tang, Bo;
Wang, Qian;
Lai, Luhua

Publication type:

Article

Temperature-accelerated molecular dynamics gives insights into globular conformations sampled in the free state of the AC catalytic domain.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2483, doi. 10.1002/prot.24612

By:

Selwa, Edithe;
Huynh, Tru;
Ciccotti, Giovanni;
Maragliano, Luca;
Malliavin, Thérèse E.

Publication type:

Article

A detailed representation of electrostatic energy in prediction of sequence and pH dependence of protein stability.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2497, doi. 10.1002/prot.24613

By:

Dudek, Michael J.

Publication type:

Article

A multiscale model for simulating binding kinetics of proteins with flexible linkers.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2512, doi. 10.1002/prot.24614

By:

Chen, Jiawen;
Xie, Zhong‐Ru;
Wu, Yinghao

Publication type:

Article

The modular structure of ThDP-dependent enzymes.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2523, doi. 10.1002/prot.24615

By:

Vogel, Constantin;
Pleiss, Jürgen

Publication type:

Article

Crystal structure of the C-terminal domain of mouse TLR9.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2874, doi. 10.1002/prot.24616

By:

Collins, Bernard;
Wilson, Ian A.

Publication type:

Article

Structure-based simulations reveal concerted dynamics of GPCR activation.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2538, doi. 10.1002/prot.24617

By:

Leioatts, Nicholas;
Suresh, Pooja;
Romo, Tod D.;
Grossfield, Alan

Publication type:

Article

Specific potassium ion interactions facilitate homocysteine binding to betaine-homocysteine S-methyltransferase.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2552, doi. 10.1002/prot.24619

By:

Mládková, Jana;
Hladílková, Jana;
Diamond, Carrie E.;
Tryon, Katherine;
Yamada, Kazuhiro;
Garrow, Timothy A.;
Jungwirth, Pavel;
Koutmos, Markos;
Jiráček, Jiří

Publication type:

Article

Structures of mesophilic and extremophilic citrate synthases reveal rigidity and flexibility for function.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2657, doi. 10.1002/prot.24630

By:

Wells, Stephen A.;
Crennell, Susan J.;
Danson, Michael J.

Publication type:

Article

Extracting representative structures from protein conformational ensembles.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2671, doi. 10.1002/prot.24633

By:

Perez, Alberto;
Roy, Arijit;
Kasavajhala, Koushik;
Wagaman, Amy;
Dill, Ken A.;
MacCallum, Justin L.

Publication type:

Article

A multiscale approach to predicting affinity changes in protein-protein interfaces.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2681, doi. 10.1002/prot.24634

By:

Dourado, Daniel F. A. R.;
Flores, Samuel Coulbourn

Publication type:

Article

Analysis of the linker region joining the adenylation and carrier protein domains of the modular nonribosomal peptide synthetases.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2691, doi. 10.1002/prot.24635

By:

Miller, Bradley R.;
Sundlov, Jesse A.;
Drake, Eric J.;
Makin, Thomas A.;
Gulick, Andrew M.

Publication type:

Article

Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2703, doi. 10.1002/prot.24636

By:

Srisucharitpanit, Kanokporn;
Yao, Min;
Promdonkoy, Boonhiang;
Chimnaronk, Sarin;
Tanaka, Isao;
Boonserm, Panadda

Publication type:

Article

Hot-spot analysis to dissect the functional protein-protein interface of a tRNA-modifying enzyme.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2713, doi. 10.1002/prot.24637

By:

Jakobi, Stephan;
Nguyen, Tran Xuan Phong;
Debaene, François;
Metz, Alexander;
Sanglier‐Cianférani, Sarah;
Reuter, Klaus;
Klebe, Gerhard

Publication type:

Article

Structural insights into the stabilization of active, tetrameric DszC by its C-terminus.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2733, doi. 10.1002/prot.24638

By:

Zhang, Liang;
Duan, Xiaolu;
Zhou, Daming;
Dong, Zhe;
Ji, Kaihua;
Meng, Wuyi;
Li, Guoqiang;
Li, Xin;
Yang, Haitao;
Ma, Ting;
Rao, Zihe

Publication type:

Article

Molecular dynamics simulations of the auxin-binding protein 1 in complex with indole-3-acetic acid and naphthalen-1-acetic acid.

Published in:

Proteins, 2014, v. 82, n. 10, p. 2744, doi. 10.1002/prot.24639

By:

Grandits, Melanie;
Oostenbrink, Chris

Publication type:

Article