Works matching IS 08873585 AND DT 2013 AND VI 81 AND IP 12

Results: 19

Data-driven models for protein interaction and design.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2221, doi. 10.1002/prot.24405

By:

Zhu, Xiaolei;
Ericksen, Spencer S.;
Demerdash, Omar N. A.;
Mitchell, Julie C.

Publication type:

Article

Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2210, doi. 10.1002/prot.24423

By:

Vangone, Anna;
Cavallo, Luigi;
Oliva, Romina

Publication type:

Article

Defining the limits of homology modeling in information-driven protein docking.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2119, doi. 10.1002/prot.24382

By:

Rodrigues, J. P. G. L. M.;
Melquiond, A. S. J.;
Karaca, E.;
Trellet, M.;
Dijk, M.;
Zundert, G. C. P.;
Schmitz, C.;
Vries, S. J.;
Bordogna, A.;
Bonati, L.;
Kastritis, P. L.;
Bonvin, Alexandre M. J. J.

Publication type:

Article

The targets of CAPRI rounds 20-27.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2075, doi. 10.1002/prot.24375

By:

Janin, Joël

Publication type:

Article

Flexible docking and refinement with a coarse-grained protein model using ATTRACT.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2167, doi. 10.1002/prot.24400

By:

Vries, Sjoerd;
Zacharias, Martin

Publication type:

Article

Detection of peptide-binding sites on protein surfaces: The first step toward the modeling and targeting of peptide-mediated interactions.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2096, doi. 10.1002/prot.24422

By:

Lavi, Assaf;
Ngan, Chi Ho;
Movshovitz‐Attias, Dana;
Bohnuud, Tanggis;
Yueh, Christine;
Beglov, Dmitri;
Schueler‐Furman, Ora;
Kozakov, Dima

Publication type:

Article

Protein docking using case-based reasoning.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2150, doi. 10.1002/prot.24433

By:

Ghoorah, Anisah W.;
Devignes, Marie‐Dominique;
Smaïl‐Tabbone, Malika;
Ritchie, David W.

Publication type:

Article

Improved flexible refinement of protein docking in CAPRI rounds 22-27.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2129, doi. 10.1002/prot.24404

By:

Shen, Yang

Publication type:

Article

Global and local structural similarity in protein-protein complexes: Implications for template-based docking.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2137, doi. 10.1002/prot.24392

By:

Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

Performance of ZDOCK in CAPRI rounds 20-26.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2175, doi. 10.1002/prot.24432

By:

Vreven, Thom;
Pierce, Brian G.;
Hwang, Howook;
Weng, Zhiping

Publication type:

Article

How good is automated protein docking?

Published in:

Proteins, 2013, v. 81, n. 12, p. 2159, doi. 10.1002/prot.24403

By:

Kozakov, Dima;
Beglov, Dmitri;
Bohnuud, Tanggis;
Mottarella, Scott E.;
Xia, Bing;
Hall, David R.;
Vajda, Sandor

Publication type:

Article

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2201, doi. 10.1002/prot.24425

By:

Kilambi, Krishna Praneeth;
Pacella, Michael S.;
Xu, Jianqing;
Labonte, Jason W.;
Porter, Justin R.;
Muthu, Pravin;
Drew, Kevin;
Kuroda, Daisuke;
Schueler‐Furman, Ora;
Bonneau, Richard;
Gray, Jeffrey J.

Publication type:

Article

Predicting protein-DNA interactions by full search computational docking.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2106, doi. 10.1002/prot.24395

By:

Roberts, Victoria A.;
Pique, Michael E.;
Ten Eyck, Lynn F.;
Li, Sheng

Publication type:

Article

Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2229, doi. 10.1002/prot.24366

By:

Qin, Sanbo;
Zhou, Huan‐Xiang

Publication type:

Article

Coming to peace with protein complexes? 5<sup>th</sup> CAPRI evaluation meeting, April 17-19<sup>th</sup> 2013 - Utrecht.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2073, doi. 10.1002/prot.24431

By:

Bonvin, Alexandre

Publication type:

Article

Docking, scoring, and affinity prediction in CAPRI.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2082, doi. 10.1002/prot.24428

By:

Lensink, Marc F.;
Wodak, Shoshana J.

Publication type:

Article

Expanding the frontiers of protein-protein modeling: From docking and scoring to binding affinity predictions and other challenges.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2192, doi. 10.1002/prot.24387

By:

Pallara, Chiara;
Jiménez‐García, Brian;
Pérez‐Cano, Laura;
Romero‐Durana, Miguel;
Solernou, Albert;
Grosdidier, Solène;
Pons, Carles;
Moal, Iain H.;
Fernandez‐Recio, Juan

Publication type:

Article

A Markov-chain model description of binding funnels to enhance the ranking of docked solutions.

Published in:

Proteins, 2013, v. 81, n. 12, p. 2143, doi. 10.1002/prot.24369

By:

Torchala, Mieczyslaw;
Moal, Iain H.;
Chaleil, Raphael A. G.;
Agius, Rudi;
Bates, Paul A.

Publication type:

Article

Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI).

Published in:

Proteins, 2013, v. 81, n. 12, p. 2183, doi. 10.1002/prot.24435

By:

Huang, Sheng‐You;
Yan, Chengfei;
Grinter, Sam Z.;
Chang, Shan;
Jiang, Lin;
Zou, Xiaoqin

Publication type:

Article