How noise in force fields can affect the structural refinement of protein models?
- Published in:
- Proteins, 2012, v. 80, n. 2, p. 335, doi. 10.1002/prot.23240
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- Publication type:
- Article
Works matching IS 08873585 AND DT 2012 AND VI 80 AND IP 2
Results: 30
1
2
Minimal ensembles of side chain conformers for modeling protein-protein interactions.
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- Proteins, 2012, v. 80, n. 2, p. 591, doi. 10.1002/prot.23222
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- Publication type:
- Article
3
Identifying continuous pores in protein structures with PROPORES by computational repositioning of gating residues.
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- Proteins, 2012, v. 80, n. 2, p. 421, doi. 10.1002/prot.23204
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- Article
4
The dual role of fragments in fragment-assembly methods for de novo protein structure prediction.
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- Proteins, 2012, v. 80, n. 2, p. 490, doi. 10.1002/prot.23215
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- Publication type:
- Article
5
Cofactor-binding sites in proteins of deviating sequence: Comparative analysis and clustering in torsion angle, cavity, and fold space.
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- Proteins, 2012, v. 80, n. 2, p. 626, doi. 10.1002/prot.23226
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- Publication type:
- Article
6
Structure of the DNA-bound T-box domain of human TBX1, a transcription factor associated with the DiGeorge syndrome.
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- Proteins, 2012, v. 80, n. 2, p. 655, doi. 10.1002/prot.23208
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- Publication type:
- Article
7
A temperature-dependent conformational change of NADH oxidase from Thermus thermophilus HB8.
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- Proteins, 2012, v. 80, n. 2, p. 546, doi. 10.1002/prot.23219
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- Publication type:
- Article
8
Structural characterization by nuclear magnetic resonance of the impact of phosphorylation in the proline-rich region of the disordered Tau protein.
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- Proteins, 2012, v. 80, n. 2, p. 454, doi. 10.1002/prot.23210
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- Article
9
Multiple drugs and multiple targets: An analysis of the electrostatic determinants of binding between non-nucleoside HIV-1 reverse transcriptase inhibitors and variants of HIV-1 RT.
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- Proteins, 2012, v. 80, n. 2, p. 573, doi. 10.1002/prot.23221
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- Publication type:
- Article
10
STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions.
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- Proteins, 2012, v. 80, n. 2, p. 410, doi. 10.1002/prot.23203
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- Article
11
Predicting nucleic acid binding interfaces from structural models of proteins.
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- Proteins, 2012, v. 80, n. 2, p. 482, doi. 10.1002/prot.23214
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- Publication type:
- Article
12
Longer simulations sample larger subspaces of conformations while maintaining robust mechanisms of motion.
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- Proteins, 2012, v. 80, n. 2, p. 616, doi. 10.1002/prot.23225
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- Publication type:
- Article
13
Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold.
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- Proteins, 2012, v. 80, n. 2, p. 671, doi. 10.1002/prot.23236
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- Article
14
Protein loop closure using orientational restraints from NMR data.
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- Proteins, 2012, v. 80, n. 2, p. 433, doi. 10.1002/prot.23207
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- Publication type:
- Article
15
Representing and comparing protein folds and fold families using three-dimensional shape-density representations.
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- Proteins, 2012, v. 80, n. 2, p. 530, doi. 10.1002/prot.23218
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- Publication type:
- Article
16
Prediction of protein secondary structure from circular dichroism using theoretically derived spectra.
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- Proteins, 2012, v. 80, n. 2, p. 374, doi. 10.1002/prot.23188
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- Publication type:
- Article
17
Ensemble modeling of protein disordered states: Experimental restraint contributions and validation.
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- Proteins, 2012, v. 80, n. 2, p. 556, doi. 10.1002/prot.23220
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- Publication type:
- Article
18
Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe.
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- Proteins, 2012, v. 80, n. 2, p. 661, doi. 10.1002/prot.23231
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- Publication type:
- Article
19
Illuminating the early signaling pathway of a fungal light-oxygen-voltage photoreceptor.
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- Proteins, 2012, v. 80, n. 2, p. 471, doi. 10.1002/prot.23213
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- Publication type:
- Article
20
Temperature-dependent study reveals that dynamics of hydrophobic residues plays an important functional role in the mitochondrial Tim9-Tim10 complex.
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- Proteins, 2012, v. 80, n. 2, p. 602, doi. 10.1002/prot.23224
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- Publication type:
- Article
21
Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron.
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- Proteins, 2012, v. 80, n. 2, p. 667, doi. 10.1002/prot.23235
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- Publication type:
- Article
22
Structural and binding studies of the C-terminal domains of yeast TFIIF subunits Tfg1 and Tfg2.
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- Proteins, 2012, v. 80, n. 2, p. 519, doi. 10.1002/prot.23217
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- Publication type:
- Article
23
Template-based protein structure modeling using TASSER<sup>VMT</sup>.
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- Proteins, 2012, v. 80, n. 2, p. 352, doi. 10.1002/prot.23183
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- Article
24
Structural characterization of human Uch37.
- Published in:
- Proteins, 2012, v. 80, n. 2, p. 649, doi. 10.1002/prot.23147
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- Publication type:
- Article
25
The role of atomic level steric effects and attractive forces in protein folding.
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- Proteins, 2012, v. 80, n. 2, p. 362, doi. 10.1002/prot.23187
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- Publication type:
- Article
26
A structural and functional dissection of the cardiac stress response factor MS1.
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- Proteins, 2012, v. 80, n. 2, p. 398, doi. 10.1002/prot.23201
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- Publication type:
- Article
27
Super folds, networks, and barriers.
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- Proteins, 2012, v. 80, n. 2, p. 463, doi. 10.1002/prot.23212
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- Publication type:
- Article
28
Calculation of rate spectra from noisy time series data.
- Published in:
- Proteins, 2012, v. 80, n. 2, p. 342, doi. 10.1002/prot.23171
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- Publication type:
- Article
29
Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations.
- Published in:
- Proteins, 2012, v. 80, n. 2, p. 505, doi. 10.1002/prot.23216
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- Publication type:
- Article
30
Molecular dynamics simulation of conformational heterogeneity in transportin 1.
- Published in:
- Proteins, 2012, v. 80, n. 2, p. 382, doi. 10.1002/prot.23193
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- Publication type:
- Article