Works matching IS 08873585 AND DT 2011 AND VI 79 AND IP 7

Results: 35

Conformational dynamics of.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2097, doi. 10.1002/prot.23030

By:

Silva, Daniel-Adriano;
Domínguez-Ramírez, Lenin;
Rojo-Domínguez, Arturo;
Sosa-Peinado, Alejandro

Publication type:

Article

Toward the quantum chemical calculation of nuclear magnetic resonance chemical shifts of proteins.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2189, doi. 10.1002/prot.23041

By:

Frank, Andrea;
Onila, Ionut;
Möller, Heiko M.;
Exner, Thomas E.

Publication type:

Article

Crystal structure of Bacteroides thetaiotaomicron TetX2: A tetracycline degrading monooxygenase at 2.8 Å resolution.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2335, doi. 10.1002/prot.23052

By:

Walkiewicz, Katarzyna;
Davlieva, Milya;
Wu, Gang;
Shamoo, Yousif

Publication type:

Article

Computer simulation study of amyloid fibril formation by palindromic sequences in prion peptides.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2132, doi. 10.1002/prot.23034

By:

Wagoner, Victoria A.;
Cheon, Mookyung;
Chang, Iksoo;
Hall, Carol K.

Publication type:

Article

Observing the osmophobic effect in action at the single molecule level.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2214, doi. 10.1002/prot.23045

By:

Aioanei, Daniel;
Tessari, Isabella;
Bubacco, Luigi;
Samorì, Bruno;
Brucale, Marco

Publication type:

Article

In silico predictions of LH2 ring sizes from the crystal structure of a single subunit using molecular dynamics simulations.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2306, doi. 10.1002/prot.23056

By:

Janosi, Lorant;
Keer, Harindar;
Cogdell, Richard J.;
Ritz, Thorsten;
Kosztin, Ioan

Publication type:

Article

Distinguishing two groups of flavin reductases by analyzing the protonation state of an active site carboxylic acid.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2076, doi. 10.1002/prot.23027

By:

Dumit, Verónica I.;
Cortez, Néstor;
Matthias Ullmann, G.

Publication type:

Article

Statistical analysis of protein structures suggests that buried ionizable residues in proteins are hydrogen bonded or form salt bridges.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2027, doi. 10.1002/prot.23067

By:

Bush, Jeffrey;
Makhatadze, George I.

Publication type:

Article

Crystal structure of the catalytic domain of cholesterol-α-glucosyltransferase from Helicobacter pylori.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2321, doi. 10.1002/prot.23038

By:

Lee, Sang Jae;
Lee, Byung Il;
Suh, Se Won

Publication type:

Article

Structural characterization of the mitomycin 7- O-methyltransferase.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2181, doi. 10.1002/prot.23040

By:

Singh, Shanteri;
Chang, Aram;
Goff, Randal D.;
Bingman, Craig A.;
Grüschow, Sabine;
Sherman, David H.;
Phillips, George N.;
Thorson, Jon S.

Publication type:

Article

Protein loop selection using orientation-dependent force fields derived by parameter optimization.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2260, doi. 10.1002/prot.23051

By:

Liang, Shide;
Zhang, Chi;
Standley, Daron M.

Publication type:

Article

Structural memory of natively unfolded tau protein detected by small-angle X-ray scattering.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2122, doi. 10.1002/prot.23033

By:

Shkumatov, Alexander V.;
Chinnathambi, Subashchandrabose;
Mandelkow, Eckhard;
Svergun, Dmitri I.

Publication type:

Article

Leukocyte integrin αLβ2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2203, doi. 10.1002/prot.23044

By:

Chng, Choon-Peng;
Tan, Suet-Mien

Publication type:

Article

Coarse-grained modeling of conformational transitions underlying the processive stepping of myosin V dimer along filamentous actin.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2291, doi. 10.1002/prot.23055

By:

Zheng, Wenjun

Publication type:

Article

Crystal structure of sulfolobus tokodaii sua5 complexed with.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2065, doi. 10.1002/prot.23026

By:

Kuratani, Mitsuo;
Kasai, Takuma;
Akasaka, Ryogo;
Higashijima, Kyoko;
Terada, Takaho;
Kigawa, Takanori;
Shinkai, Akeo;
Bessho, Yoshitaka;
Yokoyama, Shigeyuki

Publication type:

Article

Structural insights into the metal binding properties of hypothetical protein MJ0754 from Methanococcus jannaschii.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2358, doi. 10.1002/prot.23066

By:

Lee, Eun Hye;
Kim, Hyun Sook;
Kim, Hye-Yeon;
Jeon, Young Ho;
Hwang, Kwang Yeon

Publication type:

Article

Quaternion-based definition of protein secondary structure straightness and its relationship to Ramachandran angles.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2172, doi. 10.1002/prot.23037

By:

Hanson, Robert M.;
Kohler, Daniel;
Braun, Steven G.

Publication type:

Article

Tat peptide-calmodulin binding studies and bioinformatics of HIV-1 protein-calmodulin interactions.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2233, doi. 10.1002/prot.23048

By:

McQueen, Peter;
Donald, Lynda J.;
Vo, Thach N.;
Nguyen, Dung H.;
Griffiths, Heather;
Shojania, Shaheen;
Standing, Kenneth G.;
O'Neil, Joe D.

Publication type:

Article

A parameterized, continuum electrostatic model for predicting protein p K.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2044, doi. 10.1002/prot.23019

By:

Burger, Steven K.;
Ayers, Paul W.

Publication type:

Article

The role of tyrosine 71 in modulating the flap conformations of BACE1.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2247, doi. 10.1002/prot.23050

By:

Spronk, Steven A.;
Carlson, Heather A.

Publication type:

Article

Analysis of water patterns in protein kinase binding sites.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2109, doi. 10.1002/prot.23032

By:

Barillari, Caterina;
Duncan, Anna L.;
Westwood, Isaac M.;
Blagg, Julian;
van Montfort, Rob L. M.

Publication type:

Article

The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2327, doi. 10.1002/prot.23043

By:

Li, Yongdong;
Jin, Zhongmin;
Yu, Xiaolin;
Allewell, Norma M.;
Tuchman, Mendel;
Shi, Dashuang

Publication type:

Article

Binding to the open conformation of HIV-1 protease.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2282, doi. 10.1002/prot.23054

By:

Lexa, Katrina W.;
Carlson, Heather A.

Publication type:

Article

Improving taxonomy-based protein fold recognition by using global and local features.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2053, doi. 10.1002/prot.23025

By:

Yang, Jian-Yi;
Chen, Xin

Publication type:

Article

Free-energy function for discriminating the native fold of a protein from misfolded decoys.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2161, doi. 10.1002/prot.23036

By:

Yasuda, Satoshi;
Yoshidome, Takashi;
Harano, Yuichi;
Roth, Roland;
Oshima, Hiraku;
Oda, Koji;
Sugita, Yuji;
Ikeguchi, Mitsunori;
Kinoshita, Masahiro

Publication type:

Article

Glucose interactions with a model peptide.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2224, doi. 10.1002/prot.23047

By:

Mason, Phillip E.;
Lerbret, Adrien;
Saboungi, Marie-Louise;
Neilson, George W.;
Dempsey, Christopher E.;
Brady, John W.

Publication type:

Article

Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2146, doi. 10.1002/prot.23035

By:

Han, Gye Won;
Ko, Jaeju;
Farr, Carol L.;
Deller, Marc C.;
Xu, Qingping;
Chiu, Hsiu-Ju;
Miller, Mitchell D.;
Sefcikova, Jana;
Somarowthu, Srinivas;
Beuning, Penny J.;
Elsliger, Marc-André;
Deacon, Ashley M.;
Godzik, Adam;
Lesley, Scott A.;
Wilson, Ian A.;
Ondrechen, Mary Jo

Publication type:

Article

Analysis of protein function and its prediction from amino acid sequence.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2086, doi. 10.1002/prot.23029

By:

Clark, Wyatt T.;
Radivojac, Predrag

Publication type:

Article

The PR/SET domain in PRDM4 is preceded by a zinc knuckle.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2341, doi. 10.1002/prot.23057

By:

Briknarová, Klára;
Atwater, Daniel Z.;
Glicken, Jessica M.;
Maynard, Stacy J.;
Ness, Tara E.

Publication type:

Article

Solution structure of the protein lipocalin 12 from rat epididymis.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2316, doi. 10.1002/prot.23031

By:

Peng, Yu;
Zhang, Xu;
Liu, Jiafu;
Liu, Qiang;
Guo, Chenyun;
Zhang, Yonglian;
Lin, Donghai

Publication type:

Article

Fast approximations of the rotational diffusion tensor and their application to structural assembly of molecular complexes.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2268, doi. 10.1002/prot.23053

By:

Berlin, Konstantin;
O'Leary, Dianne P.;
Fushman, David

Publication type:

Article

Crystal structure of a novel dimer form of FlgD from P. aeruginosa PAO1.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2346, doi. 10.1002/prot.23058

By:

Zhou, Hua;
Luo, Miao;
Cai, Xuefei;
Tang, Jian;
Niu, Siqiang;
Zhang, Wenlu;
Hu, Yuan;
Yin, Yibing;
Huang, Ailong;
Wang, Dacheng;
Wang, Deqiang

Publication type:

Article

Structural modeling and molecular dynamics simulation of the actin filament.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2033, doi. 10.1002/prot.23017

By:

Splettstoesser, Thomas;
Holmes, Kenneth C.;
Noé, Frank;
Smith, Jeremy C.

Publication type:

Article

Crystallographic and microcalorimetric analyses reveal the structural basis for high arginine specificity in the Salmonella enterica serovar Typhimurium periplasmic binding protein STM4351.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2352, doi. 10.1002/prot.23060

By:

Stamp, Anna L.;
Owen, Paul;
El Omari, Kamel;
Lockyer, Michael;
Lamb, Heather K.;
Charles, Ian G.;
Hawkins, Alastair R.;
Stammers, David K.

Publication type:

Article

Early days of protein hydrogen exchange: 1954-1972.

Published in:

Proteins, 2011, v. 79, n. 7, p. 2021, doi. 10.1002/prot.23039

By:

Baldwin, Robert L.

Publication type:

Article