Works matching IS 08873585 AND DT 2011 AND VI 79 AND IP 1

Results: 27

Exploring coumarin egress channels in human cytochrome p450 2a6 by random acceleration and steered molecular dynamics simulations.

Published in:

Proteins, 2011, v. 79, n. 1, p. 271, doi. 10.1002/prot.22880

By:

Li, Weihua;
Shen, Jie;
Liu, Guixia;
Tang, Yun;
Hoshino, Tyuji

Publication type:

Article

Conformational regulation of the EGFR kinase core by the juxtamembrane and C-terminal tail: A molecular dynamics study.

Published in:

Proteins, 2011, v. 79, n. 1, p. 99, doi. 10.1002/prot.22862

By:

Mustafa, Morad;
Mirza, Amar;
Kannan, Natarajan

Publication type:

Article

The reaction mechanism of type I phosphomannose isomerases: New information from inhibition and polarizable molecular mechanics studies.

Published in:

Proteins, 2011, v. 79, n. 1, p. 203, doi. 10.1002/prot.22873

By:

Roux, Céline;
Bhatt, Forum;
Foret, Johanna;
de Courcy, Benoit;
Gresh, Nohad;
Piquemal, Jean-Philip;
Jeffery, Constance J.;
Salmon, Laurent

Publication type:

Article

Validating and improving elastic network models with molecular dynamics simulations.

Published in:

Proteins, 2011, v. 79, n. 1, p. 23, doi. 10.1002/prot.22855

By:

Romo, Tod D.;
Grossfield, Alan

Publication type:

Article

Computational studies of colicin insertion into membranes: The closed state.

Published in:

Proteins, 2011, v. 79, n. 1, p. 126, doi. 10.1002/prot.22866

By:

Prieto, Lidia;
Lazaridis, Themis

Publication type:

Article

Why are polar residues within the membrane core evolutionary conserved?

Published in:

Proteins, 2011, v. 79, n. 1, p. 79, doi. 10.1002/prot.22859

By:

Illergård, Kristoffer;
Kauko, Anni;
Elofsson, Arne

Publication type:

Article

Asymmetric amyloid fibril elongation: A new perspective on a symmetric world.

Published in:

Proteins, 2011, v. 79, n. 1, p. 92, doi. 10.1002/prot.22861

By:

Heldt, Caryn L.;
Zhang, Shuqi;
Belfort, Georges

Publication type:

Article

Distal mutation modulates the heme sliding in mouse neuroglobin investigated by molecular dynamics simulation.

Published in:

Proteins, 2011, v. 79, n. 1, p. 191, doi. 10.1002/prot.22872

By:

Xu, Jia;
Yin, Guowei;
Du, Weihong

Publication type:

Article

Estimating binding affinities by docking/scoring methods using variable protonation states.

Published in:

Proteins, 2011, v. 79, n. 1, p. 304, doi. 10.1002/prot.22883

By:

Park, Min-Sun;
Gao, Cen;
Stern, Harry A.

Publication type:

Article

Molecular mechanism of β-sheet self-organization at water-hydrophobic interfaces.

Published in:

Proteins, 2011, v. 79, n. 1, p. 1, doi. 10.1002/prot.22854

By:

Nikolic, Ana;
Baud, Stéphanie;
Rauscher, Sarah;
Pomès, Régis

Publication type:

Article

Solution NMR structure of photosystem II reaction center protein Psb28 from Synechocystis sp. Strain PCC 6803.

Published in:

Proteins, 2011, v. 79, n. 1, p. 340, doi. 10.1002/prot.22876

By:

Yang, Yunhuang;
Ramelot, Theresa A.;
Cort, John R.;
Wang, Dongyan;
Ciccosanti, Colleen;
Hamilton, Keith;
Nair, Rajesh;
Rost, Burkhard;
Acton, Thomas B.;
Xiao, Rong;
Everett, John K.;
Montelione, Gaetano T.;
Kennedy, Michael A.

Publication type:

Article

Structural, functional, and bioinformatics studies reveal a new snake venom homologue phospholipase A<sub>2</sub> class.

Published in:

Proteins, 2011, v. 79, n. 1, p. 61, doi. 10.1002/prot.22858

By:

dos Santos, Juliana I.;
Cintra-Francischinelli, Mariana;
Borges, Rafael J.;
Fernandes, Carlos A. H.;
Pizzo, Paola;
Cintra, Adélia C. O.;
Braz, Antonio S. K.;
Soares, Andreimar M.;
Fontes, Marcos R. M.

Publication type:

Article

Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium.

Published in:

Proteins, 2011, v. 79, n. 1, p. 335, doi. 10.1002/prot.22869

By:

Aramini, James M.;
Rossi, Paolo;
Cort, John R.;
Ma, Li-Chung;
Xiao, Rong;
Acton, Thomas B.;
Montelione, Gaetano T.

Publication type:

Article

Structure determination of a protein assembly by amino acid selective cross-saturation.

Published in:

Proteins, 2011, v. 79, n. 1, p. 179, doi. 10.1002/prot.22871

By:

Kanamori, Eiji;
Igarashi, Shunsuke;
Osawa, Masanori;
Fukunishi, Yoshifumi;
Shimada, Ichio;
Nakamura, Haruki

Publication type:

Article

Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information.

Published in:

Proteins, 2011, v. 79, n. 1, p. 294, doi. 10.1002/prot.22882

By:

Mizianty, Marcin J.;
Kurgan, Lukasz

Publication type:

Article

Principal component and normal mode analysis of proteins; a quantitative comparison using the GroEL subunit.

Published in:

Proteins, 2011, v. 79, n. 1, p. 232, doi. 10.1002/prot.22875

By:

Skjaerven, Lars;
Martinez, Aurora;
Reuter, Nathalie

Publication type:

Article

Noncellulosomal cohesin from the hyperthermophilic archaeon Archaeoglobus fulgidus.

Published in:

Proteins, 2011, v. 79, n. 1, p. 50, doi. 10.1002/prot.22857

By:

Voronov-Goldman, Milana;
Lamed, Raphael;
Noach, Ilit;
Borovok, Ilya;
Kwiat, Moria;
Rosenheck, Sonia;
Shimon, Linda J. W.;
Bayer, Edward A.;
Frolow, Felix

Publication type:

Article

A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions.

Published in:

Proteins, 2011, v. 79, n. 1, p. 153, doi. 10.1002/prot.22868

By:

Rajasekaran, Sanguthevar;
Merlin, Jerlin Camilus;
Kundeti, Vamsi;
Mi, Tian;
Oommen, Aaron;
Vyas, Jay;
Alaniz, Izua;
Chung, Keith;
Chowdhury, Farah;
Deverasatty, Sandeep;
Irvey, Tenisha M.;
Lacambacal, David;
Lara, Darlene;
Panchangam, Subhasree;
Rathnayake, Viraj;
Watts, Paula;
Schiller, Martin R.

Publication type:

Article

Automated minimization of steric clashes in protein structures.

Published in:

Proteins, 2011, v. 79, n. 1, p. 261, doi. 10.1002/prot.22879

By:

Ramachandran, Srinivas;
Kota, Pradeep;
Ding, Feng;
Dokholyan, Nikolay V.

Publication type:

Article

Integrated prediction of the effect of mutations on multiple protein characteristics.

Published in:

Proteins, 2011, v. 79, n. 1, p. 165, doi. 10.1002/prot.22870

By:

Johnston, Michael A.;
Søndergaard, Chresten R.;
Nielsen, Jens Erik

Publication type:

Article

Mapping mouse IL-13 binding regions using structure modeling, molecular docking, and high-density peptide microarray analysis.

Published in:

Proteins, 2011, v. 79, n. 1, p. 282, doi. 10.1002/prot.22881

By:

Madala, Satish K.;
Dolan, Michael A.;
Sharma, Deepak;
Ramalingam, Thirumalai R.;
Wilson, Mark S.;
Mentink-Kane, Margaret M.;
Masison, Daniel C.;
Wynn, Thomas A.

Publication type:

Article

The activity of recombinant human neuroglobin as an antioxidant and free radical scavenger.

Published in:

Proteins, 2011, v. 79, n. 1, p. 115, doi. 10.1002/prot.22863

By:

Li, Weiguang;
Wu, Yonghong;
Ren, Changhong;
Lu, Yiming;
Gao, Yan;
Zheng, Xiaofei;
Zhang, Chenggang

Publication type:

Article

Roles for the two N-terminal (β/α) modules in the folding of a (β/α)<sub>8</sub>-barrel protein as studied by fragmentation analysis.

Published in:

Proteins, 2011, v. 79, n. 1, p. 221, doi. 10.1002/prot.22874

By:

Akanuma, Satoshi;
Yamagishi, Akihiko

Publication type:

Article

Effect of using suboptimal alignments in template-based protein structure prediction.

Published in:

Proteins, 2011, v. 79, n. 1, p. 315, doi. 10.1002/prot.22885

By:

Chen, Hao;
Kihara, Daisuke

Publication type:

Article

Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) from Mycobacterium tuberculosis.

Published in:

Proteins, 2011, v. 79, n. 1, p. 35, doi. 10.1002/prot.22856

By:

Manikandan, Karuppasamy;
Geerlof, Arie;
Zozulya, Alexey V.;
Svergun, Dmitri I.;
Weiss, Manfred S.

Publication type:

Article

A computational investigation on the role of glycosylation in the binding of alpha1 nicotinic acetylcholine receptor with two alpha-neurotoxins.

Published in:

Proteins, 2011, v. 79, n. 1, p. 142, doi. 10.1002/prot.22867

By:

Dimitropoulos, Nikolaos;
Papakyriakou, Athanasios;
Dalkas, Georgios A.;
Chasapis, Christos T.;
Poulas, Konstantinos;
Spyroulias, Georgios A.

Publication type:

Article

Conformational analysis and design of cross-strand disulfides in antiparallel β-sheets.

Published in:

Proteins, 2011, v. 79, n. 1, p. 244, doi. 10.1002/prot.22878

By:

Indu, S.;
Kochat, V.;
Thakurela, S.;
Ramakrishnan, C.;
Varadarajan, Raghavan

Publication type:

Article