Works matching IS 08873585 AND DT 2010 AND VI 78 AND IP 15

Results: 24

Protein-protein docking benchmark version 4.0.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3111, doi. 10.1002/prot.22830

By:

Hwang, Howook;
Vreven, Thom;
Janin, Joël;
Weng, Zhiping

Publication type:

Article

The 4th meeting on the Critical Assessment of Predicted Interaction (CAPRI) held at the Mare Nostrum, Barcelona.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3065, doi. 10.1002/prot.22801

By:

Fernández-Recio, Juan;
Sternberg, Michael J. E.

Publication type:

Article

Docking by structural similarity at protein-protein interfaces.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3235, doi. 10.1002/prot.22812

By:

Sinha, Rohita;
Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

Novel modulation factor quantifies the role of water molecules in protein interactions.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3226, doi. 10.1002/prot.22805

By:

Bueno, Marta;
Temiz, Nuri A.;
Camacho, Carlos J.

Publication type:

Article

Determining macromolecular assembly structures by molecular docking and fitting into an electron density map.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3205, doi. 10.1002/prot.22845

By:

Lasker, Keren;
Sali, Andrej;
Wolfson, Haim J.

Publication type:

Article

CAPRI targets T29-T42: Proving ground for new docking procedures.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3174, doi. 10.1002/prot.22793

By:

Eisenstein, Miriam;
Ben-Shimon, Avraham;
Frankenstein, Ziv;
Kowalsman, Noga

Publication type:

Article

Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3104, doi. 10.1002/prot.22764

By:

Hwang, Howook;
Vreven, Thom;
Pierce, Brian G.;
Hung, Jui-Hung;
Weng, Zhiping

Publication type:

Article

MDockPP: A hierarchical approach for protein-protein docking and its application to CAPRI rounds 15-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3096, doi. 10.1002/prot.22797

By:

Huang, Sheng-You;
Zou, Xiaoqin

Publication type:

Article

ReplicOpter: A replicate optimizer for flexible docking.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3156, doi. 10.1002/prot.22811

By:

Demerdash, Omar N. A.;
Buyan, Amanda;
Mitchell, Julie C

Publication type:

Article

Detection and refinement of encounter complexes for protein-protein docking: Taking account of macromolecular crowding.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3189, doi. 10.1002/prot.22770

By:

Li, Xiaofan;
Moal, Iain H.;
Bates, Paul A.

Publication type:

Article

Binding site prediction and improved scoring during flexible protein-protein docking with ATTRACT.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3131, doi. 10.1002/prot.22808

By:

Fiorucci, Sébastien;
Zacharias, Martin

Publication type:

Article

The targets of CAPRI Rounds 13-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3067, doi. 10.1002/prot.22774

By:

Janin, Joël

Publication type:

Article

Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?

Published in:

Proteins, 2010, v. 78, n. 15, p. 3140, doi. 10.1002/prot.22785

By:

London, Nir;
Raveh, Barak;
Movshovitz-Attias, Dana;
Schueler-Furman, Ora

Publication type:

Article

Blind predictions of protein interfaces by docking calculations in CAPRI.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3085, doi. 10.1002/prot.22850

By:

Lensink, Marc F.;
Wodak, Shoshana J.

Publication type:

Article

Side-chain rotamer transitions at protein-protein interfaces.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3219, doi. 10.1002/prot.22821

By:

Guharoy, Mainak;
Janin, Joël;
Robert, Charles H.

Publication type:

Article

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3242, doi. 10.1002/prot.22814

By:

de Vries, Sjoerd J.;
Melquiond, Adrien S. J.;
Kastritis, Panagiotis L.;
Karaca, Ezgi;
Bordogna, Annalisa;
van Dijk, Marc;
Rodrigues, João P. G. L. M.;
Bonvin, Alexandre M. J. J.

Publication type:

Article

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3182, doi. 10.1002/prot.22773

By:

Pons, Carles;
Solernou, Albert;
Perez-Cano, Laura;
Grosdidier, Solène;
Fernandez-Recio, Juan

Publication type:

Article

Docking and scoring protein interactions: CAPRI 2009.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3073, doi. 10.1002/prot.22818

By:

Lensink, Marc F.;
Wodak, Shoshana J.

Publication type:

Article

Rosetta in CAPRI rounds 13-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3212, doi. 10.1002/prot.22784

By:

Fleishman, Sarel J.;
Corn, Jacob E.;
Strauch, Eva M.;
Whitehead, Tim A.;
Andre, Ingemar;
Thompson, James;
Havranek, James J.;
Das, Rhiju;
Bradley, Philip;
Baker, David

Publication type:

Article

Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3150, doi. 10.1002/prot.22831

By:

Gong, Xinqi;
Wang, Panwen;
Yang, Feng;
Chang, Shan;
Liu, Bin;
He, Hongqiu;
Cao, Libin;
Xu, Xianjin;
Li, Chunhua;
Chen, Weizu;
Wang, Cunxin

Publication type:

Article

An integrated suite of fast docking algorithms.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3197, doi. 10.1002/prot.22790

By:

Mashiach, Efrat;
Schneidman-Duhovny, Dina;
Peri, Aviyah;
Shavit, Yoli;
Nussinov, Ruth;
Wolfson, Haim J.

Publication type:

Article

Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3124, doi. 10.1002/prot.22835

By:

Kozakov, Dima;
Hall, David R.;
Beglov, Dmitri;
Brenke, Ryan;
Comeau, Stephen R.;
Shen, Yang;
Li, Keyong;
Zheng, Jiefu;
Vakili, Pirooz;
Paschalidis, Ioannis Ch.;
Vajda, Sandor

Publication type:

Article

Selection of near-native poses in CAPRI rounds 13-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3166, doi. 10.1002/prot.22772

By:

Qin, Sanbo;
Zhou, Huan-Xiang

Publication type:

Article

A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19.

Published in:

Proteins, 2010, v. 78, n. 15, p. 3115, doi. 10.1002/prot.22765

By:

Sircar, Aroop;
Chaudhury, Sidhartha;
Kilambi, Krishna Praneeth;
Berrondo, Monica;
Gray, Jeffrey J.

Publication type:

Article