Works matching IS 08873585 AND DT 2009 AND VI 77 AND IP S9

Results: 26

Structure prediction for CASP8 with all-atom refinement using Rosetta.

Published in:

Proteins, 2009, v. 77, n. S9, p. 89, doi. 10.1002/prot.22540

By:

Raman, Srivatsan;
Vernon, Robert;
Thompson, James;
Tyka, Michael;
Sadreyev, Ruslan;
Pei, Jimin;
Kim, David;
Kellogg, Elizabeth;
DiMaio, Frank;
Lange, Oliver;
Kinch, Lisa;
Sheffler, Will;
Kim, Bong-Hyun;
Das, Rhiju;
Grishin, Nick V.;
Baker, David

Publication type:

Article

The other 90% of the protein: Assessment beyond the Cαs for CASP8 template-based and high-accuracy models.

Published in:

Proteins, 2009, v. 77, n. S9, p. 29, doi. 10.1002/prot.22551

By:

Keedy, Daniel A.;
Williams, Christopher J.;
Headd, Jeffrey J.;
Arendall, W. Bryan;
Chen, Vincent B.;
Kapral, Gary J.;
Gillespie, Robert A.;
Block, Jeremy N.;
Zemla, Adam;
Richardson, David C.;
Richardson, Jane S.

Publication type:

Article

Assessment of CASP8 structure predictions for template free targets.

Published in:

Proteins, 2009, v. 77, n. S9, p. 50, doi. 10.1002/prot.22591

By:

Ben-David, Moshe;
Noivirt-Brik, Orly;
Paz, Aviv;
Prilusky, Jaime;
Sussman, Joel L.;
Levy, Yaakov

Publication type:

Article

CASP8 results in context of previous experiments.

Published in:

Proteins, 2009, v. 77, n. S9, p. 217, doi. 10.1002/prot.22562

By:

Kryshtafovych, Andriy;
Fidelis, Krzysztof;
Moult, John

Publication type:

Article

The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins.

Published in:

Proteins, 2009, v. 77, n. S9, p. 81, doi. 10.1002/prot.22515

By:

Venclovas, Česlovas;
Margelevičius, Mindaugas

Publication type:

Article

Applying Undertaker to quality assessment.

Published in:

Proteins, 2009, v. 77, n. S9, p. 191, doi. 10.1002/prot.22508

By:

Archie, John G.;
Paluszewski, Martin;
Karplus, Kevin

Publication type:

Article

I-TASSER: Fully automated protein structure prediction in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 100, doi. 10.1002/prot.22588

By:

Zhang, Yang

Publication type:

Article

Evaluation of template-based models in CASP8 with standard measures.

Published in:

Proteins, 2009, v. 77, n. S9, p. 18, doi. 10.1002/prot.22561

By:

Cozzetto, Domenico;
Kryshtafovych, Andriy;
Fidelis, Krzysztof;
Moult, John;
Rost, Burkhard;
Tramontano, Anna

Publication type:

Article

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.

Published in:

Proteins, 2009, v. 77, n. S9, p. 173, doi. 10.1002/prot.22532

By:

Benkert, Pascal;
Tosatto, Silvio C. E.;
Schwede, Torsten

Publication type:

Article

Protein-binding site prediction based on three-dimensional protein modeling.

Published in:

Proteins, 2009, v. 77, n. S9, p. 152, doi. 10.1002/prot.22572

By:

Oh, Mina;
Joo, Keehyoung;
Lee, Jooyoung

Publication type:

Article

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 196, doi. 10.1002/prot.22554

By:

Ezkurdia, Iakes;
Graña, Osvaldo;
Izarzugaza, José M. G.;
Tress, Michael L.

Publication type:

Article

Prediction of global and local model quality in CASP8 using the ModFOLD server.

Published in:

Proteins, 2009, v. 77, n. S9, p. 185, doi. 10.1002/prot.22491

By:

McGuffin, Liam J.

Publication type:

Article

Fast and accurate automatic structure prediction with HHpred.

Published in:

Proteins, 2009, v. 77, n. S9, p. 128, doi. 10.1002/prot.22499

By:

Hildebrand, Andrea;
Remmert, Michael;
Biegert, Andreas;
Söding, Johannes

Publication type:

Article

Prediction of ligand binding sites using homologous structures and conservation at CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 147, doi. 10.1002/prot.22513

By:

Wass, Mark N.;
Sternberg, Michael J. E.

Publication type:

Article

Assessment of disorder predictions in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 210, doi. 10.1002/prot.22586

By:

Noivirt-Brik, Orly;
Prilusky, Jaime;
Sussman, Joel L.

Publication type:

Article

Protein structure prediction center in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 5, doi. 10.1002/prot.22517

By:

Kryshtafovych, Andriy;
Krysko, Oleh;
Daniluk, Pawel;
Dmytriv, Zinovii;
Fidelis, Krzysztof

Publication type:

Article

Assessment of ligand binding residue predictions in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 138, doi. 10.1002/prot.22557

By:

López, Gonzalo;
Ezkurdia, Iakes;
Tress, Michael L.

Publication type:

Article

Assessment of global and local model quality in CASP8 using Pcons and ProQ.

Published in:

Proteins, 2009, v. 77, n. S9, p. 167, doi. 10.1002/prot.22476

By:

Larsson, Per;
Skwark, Marcin J.;
Wallner, Björn;
Elofsson, Arne

Publication type:

Article

Prediction of global and local quality of CASP8 models by MULTICOM series.

Published in:

Proteins, 2009, v. 77, n. S9, p. 181, doi. 10.1002/prot.22487

By:

Cheng, Jianlin;
Wang, Zheng;
Tegge, Allison N.;
Eickholt, Jesse

Publication type:

Article

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 114, doi. 10.1002/prot.22570

By:

Krieger, Elmar;
Joo, Keehyoung;
Lee, Jinwoo;
Lee, Jooyoung;
Raman, Srivatsan;
Thompson, James;
Tyka, Mike;
Baker, David;
Karplus, Kevin

Publication type:

Article

Performance of the Pro-sp3-TASSER server in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 123, doi. 10.1002/prot.22501

By:

Zhou, Hongyi;
Pandit, Shashi B.;
Skolnick, Jeffrey

Publication type:

Article

Evaluation of CASP8 model quality predictions.

Published in:

Proteins, 2009, v. 77, n. S9, p. 157, doi. 10.1002/prot.22534

By:

Cozzetto, Domenico;
Kryshtafovych, Andriy;
Tramontano, Anna

Publication type:

Article

Template-based and free modeling by RAPTOR++ in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 133, doi. 10.1002/prot.22567

By:

Xu, Jinbo;
Peng, Jian;
Zhao, Feng

Publication type:

Article

Assessment of the protein-structure refinement category in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 66, doi. 10.1002/prot.22538

By:

MacCallum, Justin L.;
Hua, Lan;
Schnieders, Michael J.;
Pande, Vijay S.;
Jacobson, Matthew P.;
Dill, Ken A.

Publication type:

Article

Critical assessment of methods of protein structure prediction-Round VIII.

Published in:

Proteins, 2009, v. 77, n. S9, p. 1, doi. 10.1002/prot.22589

By:

Moult, John;
Fidelis, Krzysztof;
Kryshtafovych, Andriy;
Rost, Burkhard;
Tramontano, Anna

Publication type:

Article

Target domain definition and classification in CASP8.

Published in:

Proteins, 2009, v. 77, n. S9, p. 10, doi. 10.1002/prot.22497

By:

Tress, Michael L.;
Ezkurdia, Iakes;
Richardson, Jane S.

Publication type:

Article