Works matching IS 08873585 AND DT 2009 AND VI 75 AND IP 4

Results: 23

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing.
Published in:
Proteins, 2009, v. 75, n. 4, p. 1010, doi. 10.1002/prot.22312
By:
- Joo, Keehyoung;
- Lee, Jinwoo;
- Seo, Joo-Hyun;
- Lee, Kyoungrim;
- Kim, Byung-Gee;
- Lee, Jooyoung
Publication type:
Article
Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent.
Published in:
Proteins, 2009, v. 75, n. 4, p. 954, doi. 10.1002/prot.22305
By:
- Lu, Yan;
- Derreumaux, Philippe;
- Guo, Zhi;
- Mousseau, Normand;
- Wei, Guanghong
Publication type:
Article
Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Published in:
Proteins, 2009, v. 75, n. 4, p. 1035, doi. 10.1002/prot.22367
By:
- Kang, Hee-Jin;
- Kubota, Keiko;
- Ming, Hua;
- Miyazono, Ken-ichi;
- Tanokura, Masaru
Publication type:
Article
Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility.
Published in:
Proteins, 2009, v. 75, n. 4, p. 846, doi. 10.1002/prot.22293
By:
- Babor, Mariana;
- Kortemme, Tanja
Publication type:
Article
Crystal structure of human eIF5A1: Insight into functional similarity of human eIF5A1 and eIF5A2.
Published in:
Proteins, 2009, v. 75, n. 4, p. 1040, doi. 10.1002/prot.22378
By:
- Tong, Yufeng;
- Park, Isaac;
- Hong, Bum-Soo;
- Nedyalkova, Lyudmila;
- Tempel, Wolfram;
- Park, Hee-Won
Publication type:
Article
NMR-derived solution structure of SUMO from Drosophila melanogaster (dSmt3).
Published in:
Proteins, 2009, v. 75, n. 4, p. 1046, doi. 10.1002/prot.22389
By:
- Kumar, Dinesh;
- Misra, Jyoti Ranjan;
- Kumar, Ashutosh;
- Chugh, Jeetender;
- Sharma, Shilpy;
- Hosur, Ramakrishna V.
Publication type:
Article
Comparison of the folding mechanism of highly homologous proteins in the lipid-binding protein family.
Published in:
Proteins, 2009, v. 75, n. 4, p. 799, doi. 10.1002/prot.22286
By:
- Ropson, Ira J.;
- Boyer, Joshua A.;
- Schaeffer, Blake A.;
- Dalessio, Paula M.
Publication type:
Article
High pressure reveals structural determinants for globin hexacoordination: Neuroglobin and myoglobin cases.
Published in:
Proteins, 2009, v. 75, n. 4, p. 885, doi. 10.1002/prot.22297
By:
- Capece, L.;
- Marti, M. A.;
- Bidon-Chanal, A.;
- Nadra, A.;
- Luque, F. J.;
- Estrin, D. A.
Publication type:
Article
Intrinsic structural disorder of mouse proNGF.
Published in:
Proteins, 2009, v. 75, n. 4, p. 990, doi. 10.1002/prot.22311
By:
- Paoletti, Francesca;
- Covaceuszach, Sonia;
- Konarev, Peter V.;
- Gonfloni, Stefania;
- Malerba, Francesca;
- Schwarz, Elisabeth;
- Svergun, Dmitri I.;
- Cattaneo, Antonino;
- Lamba, Doriano
Publication type:
Article
Solution structure of the Escherichia coli HybE reveals a novel fold.
Published in:
Proteins, 2009, v. 75, n. 4, p. 1051, doi. 10.1002/prot.22391
By:
- Shao, Xuan;
- Lu, Jie;
- Hu, Yunfei;
- Xia, Bin;
- Jin, Changwen
Publication type:
Article
Mechanism of formation of the C-terminal β-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. I. Importance of hydrophobic interactions in stabilization of β-hairpin structure.
Published in:
Proteins, 2009, v. 75, n. 4, p. 931, doi. 10.1002/prot.22304
By:
- Skwierawska, Agnieszka;
- Makowska, Joanna;
- Ołdziej, Stanisław;
- Liwo, Adam;
- Scheraga, Harold A.
Publication type:
Article
Collective dynamics of the ribosomal tunnel revealed by elastic network modeling.
Published in:
Proteins, 2009, v. 75, n. 4, p. 837, doi. 10.1002/prot.22292
By:
- Kurkcuoglu, Ozge;
- Kurkcuoglu, Zeynep;
- Doruker, Pemra;
- Jernigan, Robert L.
Publication type:
Article
Towards predicting Ca2+-binding sites with different coordination numbers in proteins with atomic resolution.
Published in:
Proteins, 2009, v. 75, n. 4, p. 787, doi. 10.1002/prot.22285
By:
- Wang, Xue;
- Kirberger, Michael;
- Qiu, Fasheng;
- Chen, Guantao;
- Yang, Jenny J.
Publication type:
Article
Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions.
Published in:
Proteins, 2009, v. 75, n. 4, p. 870, doi. 10.1002/prot.22296
By:
- Hvidsten, Torgeir R.;
- Kryshtafovych, Andriy;
- Fidelis, Krzysztof
Publication type:
Article
Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase.
Published in:
Proteins, 2009, v. 75, n. 4, p. 807, doi. 10.1002/prot.22289
By:
- Kumar, Anil;
- Manimekalai, Malathy Sony Subramanian;
- Balakrishna, Asha Manikkoth;
- Hunke, Cornelia;
- Weigelt, Sven;
- Sewald, Norbert;
- Grüber, Gerhard
Publication type:
Article
Investigating the binding of β-1,4-galactan to Bacillus licheniformis β-1,4-galactanase by crystallography and computational modeling.
Published in:
Proteins, 2009, v. 75, n. 4, p. 977, doi. 10.1002/prot.22310
By:
- Le Nours, Jérôme;
- De Maria, Leonardo;
- Welner, Ditte;
- Jørgensen, Christel T.;
- Christensen, Lars L. H.;
- Borchert, Torben V.;
- Larsen, Sine;
- Lo Leggio, Leila
Publication type:
Article
G protein inactive and active forms investigated by simulation methods.
Published in:
Proteins, 2009, v. 75, n. 4, p. 919, doi. 10.1002/prot.22303
By:
- Khafizov, Kamil;
- Lattanzi, Gianluca;
- Carloni, Paolo
Publication type:
Article
Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: An investigation by steered molecular dynamics simulation.
Published in:
Proteins, 2009, v. 75, n. 4, p. 1024, doi. 10.1002/prot.22314
By:
- Das, Atanu;
- Mukhopadhyay, Chaitali
Publication type:
Article
Analysis of nasturtium TmNXG1 complexes by crystallography and molecular dynamics provides detailed insight into substrate recognition by family GH16 xyloglucan endo-transglycosylases and endo-hydrolases.
Published in:
Proteins, 2009, v. 75, n. 4, p. 820, doi. 10.1002/prot.22291
By:
- Mark, Pekka;
- Baumann, Martin J.;
- Eklöf, Jens M.;
- Gullfot, Fredrika;
- Michel, Gurvan;
- Kallas, Åsa M.;
- Teeri, Tuula T.;
- Brumer, Harry;
- Czjzek, Mirjam
Publication type:
Article
Quantitative structure activity relationship of IA3-like peptides as aspartic proteinase inhibitors.
Published in:
Proteins, 2009, v. 75, n. 4, p. 859, doi. 10.1002/prot.22295
By:
- Padrón-García, Juan Alexander;
- Alonso-Tarajano, Manuel;
- Alonso-Becerra, Esther;
- Winterburn, Tim J.;
- Ruiz, Yasser;
- Kay, John;
- Berry, Colin
Publication type:
Article
Effect of pressure on helix-coil transition of an alanine-based peptide: An FTIR study.
Published in:
Proteins, 2009, v. 75, n. 4, p. 911, doi. 10.1002/prot.22302
By:
- Imamura, Hiroshi;
- Kato, Minoru
Publication type:
Article
Spontaneous β-helical fold in prion protein: The case of PrP(82-146).
Published in:
Proteins, 2009, v. 75, n. 4, p. 964, doi. 10.1002/prot.22306
By:
- Saracino, Gloria A.A.;
- Villa, Alessandra;
- Moro, Giorgio;
- Cosentino, Ugo;
- Salmona, Mario
Publication type:
Article
Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation.
Published in:
Proteins, 2009, v. 75, n. 4, p. 895, doi. 10.1002/prot.22298
By:
- Burroughs, A. Maxwell;
- Iyer, Lakshminarayan M.;
- Aravind, L.
Publication type:
Article

Works matching IS 08873585 AND DT 2009 AND VI 75 AND IP 4

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing.

Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent.

Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3.

Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility.

Crystal structure of human eIF5A1: Insight into functional similarity of human eIF5A1 and eIF5A2.

NMR-derived solution structure of SUMO from Drosophila melanogaster (dSmt3).

Comparison of the folding mechanism of highly homologous proteins in the lipid-binding protein family.

High pressure reveals structural determinants for globin hexacoordination: Neuroglobin and myoglobin cases.

Intrinsic structural disorder of mouse proNGF.

Solution structure of the Escherichia coli HybE reveals a novel fold.

Mechanism of formation of the C-terminal β-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. I. Importance of hydrophobic interactions in stabilization of β-hairpin structure.

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling.

Towards predicting Ca<sup>2+</sup>-binding sites with different coordination numbers in proteins with atomic resolution.

Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions.

Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A<sub>1</sub>A<sub>o</sub> ATP synthase.

Investigating the binding of β-1,4-galactan to Bacillus licheniformis β-1,4-galactanase by crystallography and computational modeling.

G protein inactive and active forms investigated by simulation methods.

Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: An investigation by steered molecular dynamics simulation.

Analysis of nasturtium TmNXG1 complexes by crystallography and molecular dynamics provides detailed insight into substrate recognition by family GH16 xyloglucan endo-transglycosylases and endo-hydrolases.

Quantitative structure activity relationship of IA<sub>3</sub>-like peptides as aspartic proteinase inhibitors.

Effect of pressure on helix-coil transition of an alanine-based peptide: An FTIR study.

Spontaneous β-helical fold in prion protein: The case of PrP(82-146).

Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation.