Works matching IS 08873585 AND DT 2009 AND VI 75 AND IP 4

Results: 23

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing.

Published in:

Proteins, 2009, v. 75, n. 4, p. 1010, doi. 10.1002/prot.22312

By:

Joo, Keehyoung;
Lee, Jinwoo;
Seo, Joo-Hyun;
Lee, Kyoungrim;
Kim, Byung-Gee;
Lee, Jooyoung

Publication type:

Article

Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent.

Published in:

Proteins, 2009, v. 75, n. 4, p. 954, doi. 10.1002/prot.22305

By:

Lu, Yan;
Derreumaux, Philippe;
Guo, Zhi;
Mousseau, Normand;
Wei, Guanghong

Publication type:

Article

Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3.

Published in:

Proteins, 2009, v. 75, n. 4, p. 1035, doi. 10.1002/prot.22367

By:

Kang, Hee-Jin;
Kubota, Keiko;
Ming, Hua;
Miyazono, Ken-ichi;
Tanokura, Masaru

Publication type:

Article

Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility.

Published in:

Proteins, 2009, v. 75, n. 4, p. 846, doi. 10.1002/prot.22293

By:

Babor, Mariana;
Kortemme, Tanja

Publication type:

Article

Crystal structure of human eIF5A1: Insight into functional similarity of human eIF5A1 and eIF5A2.

Published in:

Proteins, 2009, v. 75, n. 4, p. 1040, doi. 10.1002/prot.22378

By:

Tong, Yufeng;
Park, Isaac;
Hong, Bum-Soo;
Nedyalkova, Lyudmila;
Tempel, Wolfram;
Park, Hee-Won

Publication type:

Article

NMR-derived solution structure of SUMO from Drosophila melanogaster (dSmt3).

Published in:

Proteins, 2009, v. 75, n. 4, p. 1046, doi. 10.1002/prot.22389

By:

Kumar, Dinesh;
Misra, Jyoti Ranjan;
Kumar, Ashutosh;
Chugh, Jeetender;
Sharma, Shilpy;
Hosur, Ramakrishna V.

Publication type:

Article

Comparison of the folding mechanism of highly homologous proteins in the lipid-binding protein family.

Published in:

Proteins, 2009, v. 75, n. 4, p. 799, doi. 10.1002/prot.22286

By:

Ropson, Ira J.;
Boyer, Joshua A.;
Schaeffer, Blake A.;
Dalessio, Paula M.

Publication type:

Article

High pressure reveals structural determinants for globin hexacoordination: Neuroglobin and myoglobin cases.

Published in:

Proteins, 2009, v. 75, n. 4, p. 885, doi. 10.1002/prot.22297

By:

Capece, L.;
Marti, M. A.;
Bidon-Chanal, A.;
Nadra, A.;
Luque, F. J.;
Estrin, D. A.

Publication type:

Article

Intrinsic structural disorder of mouse proNGF.

Published in:

Proteins, 2009, v. 75, n. 4, p. 990, doi. 10.1002/prot.22311

By:

Paoletti, Francesca;
Covaceuszach, Sonia;
Konarev, Peter V.;
Gonfloni, Stefania;
Malerba, Francesca;
Schwarz, Elisabeth;
Svergun, Dmitri I.;
Cattaneo, Antonino;
Lamba, Doriano

Publication type:

Article

Solution structure of the Escherichia coli HybE reveals a novel fold.

Published in:

Proteins, 2009, v. 75, n. 4, p. 1051, doi. 10.1002/prot.22391

By:

Shao, Xuan;
Lu, Jie;
Hu, Yunfei;
Xia, Bin;
Jin, Changwen

Publication type:

Article

Mechanism of formation of the C-terminal β-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. I. Importance of hydrophobic interactions in stabilization of β-hairpin structure.

Published in:

Proteins, 2009, v. 75, n. 4, p. 931, doi. 10.1002/prot.22304

By:

Skwierawska, Agnieszka;
Makowska, Joanna;
Ołdziej, Stanisław;
Liwo, Adam;
Scheraga, Harold A.

Publication type:

Article

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling.

Published in:

Proteins, 2009, v. 75, n. 4, p. 837, doi. 10.1002/prot.22292

By:

Kurkcuoglu, Ozge;
Kurkcuoglu, Zeynep;
Doruker, Pemra;
Jernigan, Robert L.

Publication type:

Article

Towards predicting Ca2+-binding sites with different coordination numbers in proteins with atomic resolution.

Published in:

Proteins, 2009, v. 75, n. 4, p. 787, doi. 10.1002/prot.22285

By:

Wang, Xue;
Kirberger, Michael;
Qiu, Fasheng;
Chen, Guantao;
Yang, Jenny J.

Publication type:

Article

Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions.

Published in:

Proteins, 2009, v. 75, n. 4, p. 870, doi. 10.1002/prot.22296

By:

Hvidsten, Torgeir R.;
Kryshtafovych, Andriy;
Fidelis, Krzysztof

Publication type:

Article

Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase.

Published in:

Proteins, 2009, v. 75, n. 4, p. 807, doi. 10.1002/prot.22289

By:

Kumar, Anil;
Manimekalai, Malathy Sony Subramanian;
Balakrishna, Asha Manikkoth;
Hunke, Cornelia;
Weigelt, Sven;
Sewald, Norbert;
Grüber, Gerhard

Publication type:

Article

Investigating the binding of β-1,4-galactan to Bacillus licheniformis β-1,4-galactanase by crystallography and computational modeling.

Published in:

Proteins, 2009, v. 75, n. 4, p. 977, doi. 10.1002/prot.22310

By:

Le Nours, Jérôme;
De Maria, Leonardo;
Welner, Ditte;
Jørgensen, Christel T.;
Christensen, Lars L. H.;
Borchert, Torben V.;
Larsen, Sine;
Lo Leggio, Leila

Publication type:

Article

G protein inactive and active forms investigated by simulation methods.

Published in:

Proteins, 2009, v. 75, n. 4, p. 919, doi. 10.1002/prot.22303

By:

Khafizov, Kamil;
Lattanzi, Gianluca;
Carloni, Paolo

Publication type:

Article

Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: An investigation by steered molecular dynamics simulation.

Published in:

Proteins, 2009, v. 75, n. 4, p. 1024, doi. 10.1002/prot.22314

By:

Das, Atanu;
Mukhopadhyay, Chaitali

Publication type:

Article

Analysis of nasturtium TmNXG1 complexes by crystallography and molecular dynamics provides detailed insight into substrate recognition by family GH16 xyloglucan endo-transglycosylases and endo-hydrolases.

Published in:

Proteins, 2009, v. 75, n. 4, p. 820, doi. 10.1002/prot.22291

By:

Mark, Pekka;
Baumann, Martin J.;
Eklöf, Jens M.;
Gullfot, Fredrika;
Michel, Gurvan;
Kallas, Åsa M.;
Teeri, Tuula T.;
Brumer, Harry;
Czjzek, Mirjam

Publication type:

Article

Quantitative structure activity relationship of IA3-like peptides as aspartic proteinase inhibitors.

Published in:

Proteins, 2009, v. 75, n. 4, p. 859, doi. 10.1002/prot.22295

By:

Padrón-García, Juan Alexander;
Alonso-Tarajano, Manuel;
Alonso-Becerra, Esther;
Winterburn, Tim J.;
Ruiz, Yasser;
Kay, John;
Berry, Colin

Publication type:

Article

Effect of pressure on helix-coil transition of an alanine-based peptide: An FTIR study.

Published in:

Proteins, 2009, v. 75, n. 4, p. 911, doi. 10.1002/prot.22302

By:

Imamura, Hiroshi;
Kato, Minoru

Publication type:

Article

Spontaneous β-helical fold in prion protein: The case of PrP(82-146).

Published in:

Proteins, 2009, v. 75, n. 4, p. 964, doi. 10.1002/prot.22306

By:

Saracino, Gloria A.A.;
Villa, Alessandra;
Moro, Giorgio;
Cosentino, Ugo;
Salmona, Mario

Publication type:

Article

Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation.

Published in:

Proteins, 2009, v. 75, n. 4, p. 895, doi. 10.1002/prot.22298

By:

Burroughs, A. Maxwell;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Works matching IS 08873585 AND DT 2009 AND VI 75 AND IP 4

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing.

Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent.

Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3.

Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility.

Crystal structure of human eIF5A1: Insight into functional similarity of human eIF5A1 and eIF5A2.

NMR-derived solution structure of SUMO from Drosophila melanogaster (dSmt3).

Comparison of the folding mechanism of highly homologous proteins in the lipid-binding protein family.

High pressure reveals structural determinants for globin hexacoordination: Neuroglobin and myoglobin cases.

Intrinsic structural disorder of mouse proNGF.

Solution structure of the Escherichia coli HybE reveals a novel fold.

Mechanism of formation of the C-terminal β-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. I. Importance of hydrophobic interactions in stabilization of β-hairpin structure.

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling.

Towards predicting Ca<sup>2+</sup>-binding sites with different coordination numbers in proteins with atomic resolution.

Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions.

Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A<sub>1</sub>A<sub>o</sub> ATP synthase.

Investigating the binding of β-1,4-galactan to Bacillus licheniformis β-1,4-galactanase by crystallography and computational modeling.

G protein inactive and active forms investigated by simulation methods.

Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: An investigation by steered molecular dynamics simulation.

Analysis of nasturtium TmNXG1 complexes by crystallography and molecular dynamics provides detailed insight into substrate recognition by family GH16 xyloglucan endo-transglycosylases and endo-hydrolases.

Quantitative structure activity relationship of IA<sub>3</sub>-like peptides as aspartic proteinase inhibitors.

Effect of pressure on helix-coil transition of an alanine-based peptide: An FTIR study.

Spontaneous β-helical fold in prion protein: The case of PrP(82-146).

Natural history of the E1-like superfamily: Implication for adenylation, sulfur transfer, and ubiquitin conjugation.