Works matching IS 08873585 AND DT 2008 AND VI 72 AND IP 1

Results: 48

Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon.

Published in:

Proteins, 2008, v. 72, n. 1, p. 510, doi. 10.1002/prot.22048

By:

Bunker, Richard D.;
McKenzie, Joanna L.;
Baker, Edward N.;
Arcus, Vickery L.

Publication type:

Article

The insecticidal protein hirsutellin A from the mite fungal pathogen Hirsutella thompsonii is a ribotoxin.

Published in:

Proteins, 2008, v. 72, n. 1, p. 217, doi. 10.1002/prot.21910

By:

Herrero-Galán, Elías;
Lacadena, Javier;
Martínez del Pozo, Álvaro;
Boucias, Drion G.;
Olmo, Nieves;
Oñaderra, Mercedes;
Gavilanes, José G.

Publication type:

Article

Mechanism of inhibition of wt-dihydrofolate reductase from E. coli by tea epigallocatechin-gallate.

Published in:

Proteins, 2008, v. 72, n. 1, p. 240, doi. 10.1002/prot.21914

By:

Spina, Michele;
Cuccioloni, Massimiliano;
Mozzicafreddo, Matteo;
Montecchia, Francesca;
Pucciarelli, Stefania;
Eleuteri, Anna Maria;
Fioretti, Evandro;
Angeletti, Mauro

Publication type:

Article

Ordered conformational change in the protein backbone: Prediction of conformationally variable positions from sequence and low-resolution structural data.

Published in:

Proteins, 2008, v. 72, n. 1, p. 74, doi. 10.1002/prot.21899

By:

Kuznetsov, Igor B.

Publication type:

Article

A combination of rescoring and refinement significantly improves protein docking performance.

Published in:

Proteins, 2008, v. 72, n. 1, p. 270, doi. 10.1002/prot.21920

By:

Pierce, Brian;
Weng, Zhiping

Publication type:

Article

Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) from Thermoanaerobacter tengcongensis, a metal ion-dependent enzyme: Insight into the catalytic mechanism.

Published in:

Proteins, 2008, v. 72, n. 1, p. 280, doi. 10.1002/prot.21921

By:

Shi, Liang;
Liu, Jun-Feng;
An, Xiao-Min;
Liang, Dong-Cai

Publication type:

Article

Protein domain annotation with integration of heterogeneous information sources.

Published in:

Proteins, 2008, v. 72, n. 1, p. 461, doi. 10.1002/prot.21943

By:

Zhao, Xing-Ming;
Wang, Yong;
Chen, Luonan;
Aihara, Kazuyuki

Publication type:

Article

Folding and dimerization of the ionic peptide EAK 16-IV.

Published in:

Proteins, 2008, v. 72, n. 1, p. 150, doi. 10.1002/prot.21903

By:

Yan, Zhiqiang;
Wang, Jun;
Wang, Wei

Publication type:

Article

Prediction of protein local structures and folding fragments based on building-block library.

Published in:

Proteins, 2008, v. 72, n. 1, p. 353, doi. 10.1002/prot.21931

By:

Dong, Qiwen;
Wang, Xiaolong;
Lin, Lei

Publication type:

Article

How to lose a kink and gain a helix: pH independent conformational changes of the fusion domains from influenza hemagglutinin in heterogeneous lipid bilayers.

Published in:

Proteins, 2008, v. 72, n. 1, p. 299, doi. 10.1002/prot.21925

By:

Jang, Hyunbum;
Michaud-Agrawal, Naveen;
Johnston, Jennifer M.;
Woolf, Thomas B.

Publication type:

Article

Probing electric fields in proteins in solution by NMR spectroscopy.

Published in:

Proteins, 2008, v. 72, n. 1, p. 333, doi. 10.1002/prot.21929

By:

Hass, Mathias A. S.;
Ringkjøbing Jensen, Malene;
Led, Jens J.

Publication type:

Article

Computational active site analysis of molecular pathways to improve functional classification of enzymes.

Published in:

Proteins, 2008, v. 72, n. 1, p. 184, doi. 10.1002/prot.21907

By:

Ozyurt, A. Sinem;
Selby, Thomas L.

Publication type:

Article

Helix formation is a dynamical bottleneck in the recovery reaction of Photoactive Yellow Protein.

Published in:

Proteins, 2008, v. 72, n. 1, p. 136, doi. 10.1002/prot.21902

By:

Vreede, Jocelyne;
Hellingwerf, Klaas J.;
Bolhuis, Peter G.

Publication type:

Article

Protein kinase C isozymes and their selectivity towards ruboxistaurin.

Published in:

Proteins, 2008, v. 72, n. 1, p. 447, doi. 10.1002/prot.21942

By:

Tang, Sishi;
Xiao, Victor;
Wei, Lianhu;
Whiteside, Catharine I.;
Kotra, Lakshmi P.

Publication type:

Article

On defining the dynamics of hydrophobic patches on protein surfaces.

Published in:

Proteins, 2008, v. 72, n. 1, p. 105, doi. 10.1002/prot.21924

By:

Lijnzaad, Philip;
Feenstra, K. Anton;
Heringa, Jaap;
Holstege, Frank C. P.

Publication type:

Article

Crystal structure and stereochemical studies of KD(P)G aldolase from Thermoproteus tenax.

Published in:

Proteins, 2008, v. 72, n. 1, p. 35, doi. 10.1002/prot.21890

By:

Pauluhn, Anuschka;
Ahmed, Hatim;
Lorentzen, Esben;
Buchinger, Sebastian;
Schomburg, Dietmar;
Siebers, Bettina;
Pohl, Ehmke

Publication type:

Article

Molecular dynamics study of Pseudomonas aeruginosa lectin-II complexed with monosaccharides.

Published in:

Proteins, 2008, v. 72, n. 1, p. 382, doi. 10.1002/prot.21935

By:

Mishra, Navnit Kumar;
Kulhánek, Petr;
Šnajdrová, Lenka;
Petřek, Martin;
Imberty, Anne;
Koča, Jaroslav

Publication type:

Article

Cloning and characterization of a caesalpinoid ( Chamaecrista fasciculata) hemoglobin: The structural transition from a nonsymbiotic hemoglobin to a leghemoglobin.

Published in:

Proteins, 2008, v. 72, n. 1, p. 252, doi. 10.1002/prot.21917

By:

Gopalasubramaniam, Sabarinathan K.;
Kovacs, Frank;
Violante-Mota, Fernando;
Twigg, Paul;
Arredondo-Peter, Raúl;
Sarath, Gautam

Publication type:

Article

Detailed conformational dynamics of juxtamembrane region and activation loop in c-Kit kinase activation process.

Published in:

Proteins, 2008, v. 72, n. 1, p. 323, doi. 10.1002/prot.21928

By:

Zou, Jun;
Wang, Yi-Dong;
Ma, Fan-Xin;
Xiang, Ming-Li;
Shi, Bing;
Wei, Yu-Quan;
Yang, Sheng-Yong

Publication type:

Article

Molecular dynamics simulations of the active matrix metalloproteinase-2: Positioning of the N-terminal fragment and binding of a small peptide substrate.

Published in:

Proteins, 2008, v. 72, n. 1, p. 50, doi. 10.1002/prot.21894

By:

Díaz, Natalia;
Suárez, Dimas

Publication type:

Article

Structural properties of the DNA-bound form of a novel tandem repeat DNA-binding domain, STPR.

Published in:

Proteins, 2008, v. 72, n. 1, p. 414, doi. 10.1002/prot.21939

By:

Saito, Shin;
Yokoyama, Takuya;
Aizawa, Tomoyasu;
Kawaguchi, Kyosuke;
Yamaki, Takeshi;
Matsumoto, Daisuke;
Kamijima, Tatsuro;
Kamiya, Masakatsu;
Kumaki, Yasuhiro;
Mizuguchi, Mineyuki;
Takiya, Sigeharu;
Demura, Makoto;
Kawano, Keiichi

Publication type:

Article

Temperature-dependent downhill unfolding of ubiquitin. I. Nanosecond-to-millisecond resolved nonlinear infrared spectroscopy.

Published in:

Proteins, 2008, v. 72, n. 1, p. 474, doi. 10.1002/prot.22043

By:

Chung, Hoi Sung;
Tokmakoff, Andrei

Publication type:

Article

Lipid membrane templates the ordering and induces the fibrillogenesis of Alzheimer's disease amyloid-β peptide.

Published in:

Proteins, 2008, v. 72, n. 1, p. 1, doi. 10.1002/prot.21887

By:

Chi, Eva Y.;
Ege, Canay;
Winans, Amy;
Majewski, Jaroslaw;
Wu, Guohui;
Kjaer, Kristian;
Lee, Ka Yee C.

Publication type:

Article

Crystal structure of the methyltransferase domain of human TARBP1.

Published in:

Proteins, 2008, v. 72, n. 1, p. 519, doi. 10.1002/prot.22065

By:

Wu, Hong;
Min, Jinrong;
Zeng, Hong;
Plotnikov, Alexander N.

Publication type:

Article

Crystal structure of Tflp: A ferredoxin-like metallo-β-lactamase superfamily protein from Thermoanaerobacter tengcongensis.

Published in:

Proteins, 2008, v. 72, n. 1, p. 531, doi. 10.1002/prot.22069

By:

Gu, Shen-Yan;
Yan, Xiao-Xue;
Liang, Dong-Cai

Publication type:

Article

The size of the intermolecular energy funnel in protein-protein interactions.

Published in:

Proteins, 2008, v. 72, n. 1, p. 344, doi. 10.1002/prot.21930

By:

Hunjan, Jagtar;
Tovchigrechko, Andrey;
Gao, Ying;
Vakser, Ilya A.

Publication type:

Article

Role of the amino acid sequence in domain swapping of the B1 domain of protein G.

Published in:

Proteins, 2008, v. 72, n. 1, p. 88, doi. 10.1002/prot.21901

By:

Sirota, Fernanda L.;
Héry-Huynh, Stephanie;
Maurer-Stroh, Sebastian;
Wodak, Shoshana J.

Publication type:

Article

Rigid body essential X-ray crystallography: Distinguishing the bend and twist of glutamate receptor ligand binding domains.

Published in:

Proteins, 2008, v. 72, n. 1, p. 434, doi. 10.1002/prot.21941

By:

Bjerrum, Esben J.;
Biggin, Philip C.

Publication type:

Article

Rational design of peptides active against the gram positive bacteria Staphylococcus aureus.

Published in:

Proteins, 2008, v. 72, n. 1, p. 229, doi. 10.1002/prot.21912

By:

Landon, Céline;
Barbault, Florent;
Legrain, Michèle;
Guenneugues, Marc;
Vovelle, Françoise

Publication type:

Article

Acidic range titration of HEWL using a constant-pH molecular dynamics method.

Published in:

Proteins, 2008, v. 72, n. 1, p. 289, doi. 10.1002/prot.21923

By:

Machuqueiro, Miguel;
Baptista, António M.

Publication type:

Article

Protein structure modeling indicates hexahistidine-tag interference with enzyme activity.

Published in:

Proteins, 2008, v. 72, n. 1, p. 173, doi. 10.1002/prot.21905

By:

Freydank, Anna-Carolin;
Brandt, Wolfgang;
Dräger, Birgit

Publication type:

Article

Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions.

Published in:

Proteins, 2008, v. 72, n. 1, p. 313, doi. 10.1002/prot.21927

By:

Nonaka, Yasuhiro;
Aizawa, Tomoyasu;
Akieda, Daisuke;
Yasui, Masanori;
Watanabe, Masahiro;
Watanabe, Nobuhisa;
Tanaka, Isao;
Kamiya, Masakatsu;
Mizuguchi, Mineyuki;
Demura, Makoto;
Kawano, Keiichi

Publication type:

Article

RhoB can adopt a Mg<sup>2+</sup> free conformation prior to GEF binding.

Published in:

Proteins, 2008, v. 72, n. 1, p. 498, doi. 10.1002/prot.22017

By:

Soundararajan, Meera;
Turnbull, Andrew;
Fedorov, Oleg;
Johansson, Catrine;
Doyle, Declan A.

Publication type:

Article

Differentiation between two-state and multi-state folding proteins based on sequence.

Published in:

Proteins, 2008, v. 72, n. 1, p. 44, doi. 10.1002/prot.21893

By:

Huang, Ji-Tao;
Cheng, Jin-Pei

Publication type:

Article

Temperature-dependent downhill unfolding of ubiquitin. II. Modeling the free energy surface.

Published in:

Proteins, 2008, v. 72, n. 1, p. 488, doi. 10.1002/prot.22042

By:

Chung, Hoi Sung;
Tokmakoff, Andrei

Publication type:

Article

Evolutionary conserved N-terminal region of human muscle fructose 1,6-bisphosphatase regulates its activity and the interaction with aldolase.

Published in:

Proteins, 2008, v. 72, n. 1, p. 209, doi. 10.1002/prot.21909

By:

Gizak, Agnieszka;
Maciaszczyk, Ewa;
Dzugaj, Andrzej;
Eschrich, Klaus;
Rakus, Darek

Publication type:

Article

Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.

Published in:

Proteins, 2008, v. 72, n. 1, p. 526, doi. 10.1002/prot.22064

By:

Aramini, James M.;
Sharma, Seema;
Huang, Yuanpeng J.;
Swapna, G. V. T.;
Ho, Chi Kent;
Shetty, Karishma;
Cunningham, Kellie;
Ma, Li-Chung;
Zhao, Li;
Owens, Leah A.;
Jiang, Mei;
Xiao, Rong;
Liu, Jinfeng;
Baran, Michael C.;
Acton, Thomas B.;
Rost, Burkhard;
Montelione, Gaetano T.

Publication type:

Article

The Escherichia coli YdcF binds S-adenosyl- L-methionine and adopts an α/β-fold characteristic of nucleotide-utilizing enzymes.

Published in:

Proteins, 2008, v. 72, n. 1, p. 506, doi. 10.1002/prot.22046

By:

Chao, Kinlin L.;
Lim, Kap;
Lehmann, Christopher;
Doseeva, Victoria;
Howard, Andrew J.;
Schwarz, Fredrick P.;
Herzberg, Osnat

Publication type:

Article

Identifying stabilizing key residues in proteins using interresidue interaction energy matrix.

Published in:

Proteins, 2008, v. 72, n. 1, p. 402, doi. 10.1002/prot.21938

By:

Bendová-Biedermannová, Lada;
Hobza, Pavel;
Vondrášek, Jiří

Publication type:

Article

Comprehensive analysis of the helix-X-helix motif in soluble proteins.

Published in:

Proteins, 2008, v. 72, n. 1, p. 115, doi. 10.1002/prot.21879

By:

Deville, Julie;
Rey, Julien;
Chabbert, Marie

Publication type:

Article

Real-value prediction of backbone torsion angles.

Published in:

Proteins, 2008, v. 72, n. 1, p. 427, doi. 10.1002/prot.21940

By:

Xue, Bin;
Dor, Ofer;
Faraggi, Eshel;
Zhou, Yaoqi

Publication type:

Article

Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions.

Published in:

Proteins, 2008, v. 72, n. 1, p. 367, doi. 10.1002/prot.21933

By:

Minai, Ryoichi;
Matsuo, Yo;
Onuki, Hiroyuki;
Hirota, Hiroshi

Publication type:

Article

Analysis and prediction of protein local structure based on structure alphabets.

Published in:

Proteins, 2008, v. 72, n. 1, p. 163, doi. 10.1002/prot.21904

By:

Dong, Qiwen;
Wang, Xiaolong;
Lin, Lei;
Wang, Yadong

Publication type:

Article

Comparative structural analysis of the binding domain of follicle stimulating hormone receptor.

Published in:

Proteins, 2008, v. 72, n. 1, p. 393, doi. 10.1002/prot.21937

By:

Fan, Qing R.;
Hendrickson, Wayne A.

Publication type:

Article

Structure-based classification of 45 FK506-binding proteins.

Published in:

Proteins, 2008, v. 72, n. 1, p. 197, doi. 10.1002/prot.21908

By:

Somarelli, J. A.;
Lee, S. Y.;
Skolnick, J.;
Herrera, R. J.

Publication type:

Article

Unfolding and aggregation of transthyretin by the truncation of 50 N-terminal amino acids.

Published in:

Proteins, 2008, v. 72, n. 1, p. 261, doi. 10.1002/prot.21919

By:

Mizuguchi, Mineyuki;
Hayashi, Ayumi;
Takeuchi, Makoto;
Dobashi, Mizuki;
Mori, Yoshihiro;
Shinoda, Hiroyuki;
Aizawa, Tomoyasu;
Demura, Makoto;
Kawano, Keiichi

Publication type:

Article

Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities.

Published in:

Proteins, 2008, v. 72, n. 1, p. 62, doi. 10.1002/prot.21896

By:

Amir, El-Ad David;
Kalisman, Nir;
Keasar, Chen

Publication type:

Article

Development of new laccases by directed evolution: Functional and computational analyses.

Published in:

Proteins, 2008, v. 72, n. 1, p. 25, doi. 10.1002/prot.21889

By:

Festa, Giovanna;
Autore, Flavia;
Fraternali, Franca;
Giardina, Paola;
Sannia, Giovanni

Publication type:

Article