Works matching IS 08873585 AND DT 2008 AND VI 71 AND IP 3
Results: 47
FURSMASA: A new approach to rapid scoring functions that uses a MD-averaged potential energy grid and a solvent-accessible surface area term with parameters GA fit to experimental data.
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- Proteins, 2008, v. 71, n. 3, p. 1519, doi. 10.1002/prot.21991
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Crystal structure and possible dimerization of the single RRM of human PABPN1.
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- Proteins, 2008, v. 71, n. 3, p. 1539, doi. 10.1002/prot.21973
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Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).
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- Proteins, 2008, v. 71, n. 3, p. 1409, doi. 10.1002/prot.21830
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X-ray analysis of phosphoglycerate kinase 2, a sperm-specific isoform from Mus musculus.
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- Proteins, 2008, v. 71, n. 3, p. 1134, doi. 10.1002/prot.21801
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Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity.
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- Proteins, 2008, v. 71, n. 3, p. 1288, doi. 10.1002/prot.21823
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Probing electrostatic interactions and ligand binding in aspartyl-tRNA synthetase through site-directed mutagenesis and computer simulations.
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- Proteins, 2008, v. 71, n. 3, p. 1450, doi. 10.1002/prot.21834
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Use of L-asparagine and N-phosphonacetyl- L-asparagine to investigate the linkage of catalysis and homotropic cooperativity in E. coli aspartate transcarbomoylase.
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- Proteins, 2008, v. 71, n. 3, p. 1088, doi. 10.1002/prot.21760
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The C-terminal region of thermophilic tRNA (m<sup>7</sup>G46) methyltransferase (TrmB) stabilizes the dimer structure and enhances fidelity of methylation.
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- Proteins, 2008, v. 71, n. 3, p. 1400, doi. 10.1002/prot.21827
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Ranking predicted protein structures with support vector regression.
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- Proteins, 2008, v. 71, n. 3, p. 1175, doi. 10.1002/prot.21809
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Comprehensive description of protein structures using protein folding shape code.
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- Proteins, 2008, v. 71, n. 3, p. 1497, doi. 10.1002/prot.21932
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Crystal structure of a secondary vitamin D<sub>3</sub> binding site of milk β-lactoglobulin.
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- Proteins, 2008, v. 71, n. 3, p. 1197, doi. 10.1002/prot.21811
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Transpath: A computational method for locating ion transit pathways through membrane proteins.
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- Proteins, 2008, v. 71, n. 3, p. 1349, doi. 10.1002/prot.21822
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The investigation of interactions of κ-Hefutoxin1 with the voltage-gated potassium channels: A computational simulation.
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- Proteins, 2008, v. 71, n. 3, p. 1441, doi. 10.1002/prot.21833
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Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7.
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- Proteins, 2008, v. 71, n. 3, p. 1557, doi. 10.1002/prot.21987
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Ion pairs and their role in modulating stability of cold- and warm-active uracil DNA glycosylase.
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- Proteins, 2008, v. 71, n. 3, p. 1219, doi. 10.1002/prot.21815
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Direct insight into insulin aggregation by 2D NMR complemented by PFGSE NMR.
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- Proteins, 2008, v. 71, n. 3, p. 1057, doi. 10.1002/prot.21969
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Clustering orthologous proteins across phylogenetically distant species.
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- Proteins, 2008, v. 71, n. 3, p. 1113, doi. 10.1002/prot.21792
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New insights of membrane environment effects on MscL channel mechanics from theoretical approaches.
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- Proteins, 2008, v. 71, n. 3, p. 1183, doi. 10.1002/prot.21810
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Evaluating the potency of HIV-1 protease drugs to combat resistance.
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- Proteins, 2008, v. 71, n. 3, p. 1163, doi. 10.1002/prot.21808
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Estimating quality of template-based protein models by alignment stability.
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- Proteins, 2008, v. 71, n. 3, p. 1255, doi. 10.1002/prot.21819
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Correlated mutations at gp120 positions 322 and 440: Implications for gp120 structure.
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- Proteins, 2008, v. 71, n. 3, p. 1066, doi. 10.1002/prot.21982
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Crystal structure of VC1805, a conserved hypothetical protein from a Vibrio cholerae pathogenicity island, reveals homology to human p32.
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- Proteins, 2008, v. 71, n. 3, p. 1563, doi. 10.1002/prot.21993
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Crystallographic and computational studies on 4-phenyl- N-(β- D-glucopyranosyl)-1H-1,2,3-triazole-1-acetamide, an inhibitor of glycogen phosphorylase: Comparison with α- D-glucose, N-acetyl-β- D-glucopyranosylamine and N-benzoyl- N′-β- D-glucopyranosyl urea binding
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- Proteins, 2008, v. 71, n. 3, p. 1307, doi. 10.1002/prot.21837
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Crystal structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase.
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- Proteins, 2008, v. 71, n. 3, p. 1324, doi. 10.1002/prot.21667
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Binding of sulfonium-ion analogues of di- epi-swainsonine and 8- epi-lentiginosine to Drosophila Golgi α-mannosidase II: The role of water in inhibitor binding.
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- Proteins, 2008, v. 71, n. 3, p. 1484, doi. 10.1002/prot.21850
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Pressure-induced changes in the solution structure of the GB1 domain of protein G.
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- Proteins, 2008, v. 71, n. 3, p. 1432, doi. 10.1002/prot.21832
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Remote homology detection of integral membrane proteins using conserved sequence features.
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- Proteins, 2008, v. 71, n. 3, p. 1387, doi. 10.1002/prot.21825
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Crystal structure of the C-terminal conserved domain of human GRP, a galectin-related protein, reveals a function mode different from those of galectins.
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- Proteins, 2008, v. 71, n. 3, p. 1582, doi. 10.1002/prot.22003
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Predicting protein interaction interfaces from protein sequences: Case studies of subtilisin and phycocyanin.
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- Proteins, 2008, v. 71, n. 3, p. 1461, doi. 10.1002/prot.21836
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Stabilization of antibody structure upon association to a human carbonic anhydrase IX epitope studied by X-ray crystallography, microcalorimetry, and molecular dynamics simulations.
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- Proteins, 2008, v. 71, n. 3, p. 1275, doi. 10.1002/prot.21821
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Information and discrimination in pairwise contact potentials.
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- Proteins, 2008, v. 71, n. 3, p. 1071, doi. 10.1002/prot.21733
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High quality binding modes in docking ligands to proteins.
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- Proteins, 2008, v. 71, n. 3, p. 1373, doi. 10.1002/prot.21847
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Modeling of metal interaction geometries for protein-ligand docking.
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- Proteins, 2008, v. 71, n. 3, p. 1237, doi. 10.1002/prot.21818
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Modeling ensembles of transmembrane β-barrel proteins.
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- Proteins, 2008, v. 71, n. 3, p. 1097, doi. 10.1002/prot.21788
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Crystal structure of an archaeal specific DNA-binding protein (Ape10b2) from Aeropyrum pernix K1.
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- Proteins, 2008, v. 71, n. 3, p. 1156, doi. 10.1002/prot.21807
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Crystal structure and domain characterization of ScpB from Mycobacterium tuberculosis.
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- Proteins, 2008, v. 71, n. 3, p. 1553, doi. 10.1002/prot.21981
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Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 Å resolution.
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- Proteins, 2008, v. 71, n. 3, p. 1546, doi. 10.1002/prot.21992
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Optimizing pK<sub>A</sub> computation in proteins with pH adapted conformations.
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- Proteins, 2008, v. 71, n. 3, p. 1335, doi. 10.1002/prot.21820
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The point mutation A34F causes dimerization of GB1.
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- Proteins, 2008, v. 71, n. 3, p. 1420, doi. 10.1002/prot.21831
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Unstructured intermediate states in single protein force experiments.
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- Proteins, 2008, v. 71, n. 3, p. 1145, doi. 10.1002/prot.21802
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Crystal structures of MW1337R and lin2004: Representatives of a novel protein family that adopt a four-helical bundle fold.
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- Proteins, 2008, v. 71, n. 3, p. 1589, doi. 10.1002/prot.22020
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Barley aldose reductase: Structure, cofactor binding, and substrate recognition in the aldo/keto reductase 4C family.
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- Proteins, 2008, v. 71, n. 3, p. 1572, doi. 10.1002/prot.21996
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Protein model quality assessment prediction by combining fragment comparisons and a consensus C<sub>α</sub> contact potential.
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- Proteins, 2008, v. 71, n. 3, p. 1211, doi. 10.1002/prot.21813
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Effect of oxidatively damaged DNA on the active site preorganization during nucleotide incorporation in a high fidelity polymerase from Bacillus stearothermophilus.
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- Proteins, 2008, v. 71, n. 3, p. 1360, doi. 10.1002/prot.21824
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Predicting protein homocysteinylation targets based on dihedral strain energy and pKa of cysteines.
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- Proteins, 2008, v. 71, n. 3, p. 1475, doi. 10.1002/prot.21846
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CO escape from myoglobin with metadynamics simulations.
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- Proteins, 2008, v. 71, n. 3, p. 1231, doi. 10.1002/prot.21817
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Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature.
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- Proteins, 2008, v. 71, n. 3, p. 1123, doi. 10.1002/prot.21798
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