Works matching IS 08873585 AND DT 2008 AND VI 71 AND IP 1

Results: 48

Electrostatic rate enhancement and transient complex of protein-protein association.

Published in:

Proteins, 2008, v. 71, n. 1, p. 320, doi. 10.1002/prot.21679

By:

Alsallaq, Ramzi;
Zhou, Huan-Xiang

Publication type:

Article

YesT: A new rhamnogalacturonan acetyl esterase from Bacillus subtilis.

Published in:

Proteins, 2008, v. 71, n. 1, p. 379, doi. 10.1002/prot.21705

By:

Martínez-Martínez, Irene;
Navarro-Fernández, José;
Daniel Lozada-Ramírez, José;
García-Carmona, Francisco;
Sánchez-Ferrer, Álvaro

Publication type:

Article

Molecular dynamics simulations of domain motions of substrate-free S-adenosyl- L-homocysteine hydrolase in solution.

Published in:

Proteins, 2008, v. 71, n. 1, p. 131, doi. 10.1002/prot.21664

By:

Hu, Chen;
Fang, Jianwen;
Borchardt, Ronald T.;
Schowen, Richard L.;
Kuczera, Krzysztof

Publication type:

Article

Structural basis for the cold adaptation of psychrophilic M37 lipase from Photobacterium lipolyticum.

Published in:

Proteins, 2008, v. 71, n. 1, p. 476, doi. 10.1002/prot.21884

By:

Jung, Suk-Kyeong;
Jeong, Dae Gwin;
Lee, Mi Sook;
Lee, Jung-Kee;
Kim, Hyung-Kwoun;
Ryu, Seong Eon;
Park, Byoung Chul;
Kim, Jae Hoon;
Kim, Seung Jun

Publication type:

Article

Local interactions in protein folding determined through an inverse folding model.

Published in:

Proteins, 2008, v. 71, n. 1, p. 278, doi. 10.1002/prot.21730

By:

Bastolla, Ugo;
Porto, Markus;
Ortíz, Angel R.

Publication type:

Article

Flexible protein-flexible ligand docking with disrupted velocity simulated annealing.

Published in:

Proteins, 2008, v. 71, n. 1, p. 440, doi. 10.1002/prot.21781

By:

Huang, Zunnan;
Wong, Chung F.;
Wheeler, Ralph A.

Publication type:

Article

Structure of protein PH0536 from Pyrococcus horikoshii at 1.7 Å resolution reveals a novel assembly of an oligonucleotide/oligosaccharide-binding fold and an α-helical bundle.

Published in:

Proteins, 2008, v. 71, n. 1, p. 503, doi. 10.1002/prot.21895

By:

Gao, Yong-Gui;
Yao, Min;
Tanaka, Isao

Publication type:

Article

Atomic resolution (1.1 Å) structure of the ribosome-inactivating protein PD-L4 from Phytolacca dioica L. leaves.

Published in:

Proteins, 2008, v. 71, n. 1, p. 8, doi. 10.1002/prot.21712

By:

Ruggiero, Alessia;
Chambery, Angela;
Maro, Antimo Di;
Parente, Augusto;
Berisio, Rita

Publication type:

Article

Osmolyte effect on the stability and folding of a hyperthermophilic protein.

Published in:

Proteins, 2008, v. 71, n. 1, p. 110, doi. 10.1002/prot.21660

By:

Mukaiyama, Atsushi;
Koga, Yuichi;
Takano, Kazufumi;
Kanaya, Shigenori

Publication type:

Article

Kinetic and structural properties of triosephosphate isomerase from Helicobacter pylori.

Published in:

Proteins, 2008, v. 71, n. 1, p. 396, doi. 10.1002/prot.21709

By:

Chu, Chen-Hsi;
Lai, Yi-Ju;
Huang, Haimei;
Sun, Yuh-Ju

Publication type:

Article

Protein-protein binding is often associated with changes in protonation state.

Published in:

Proteins, 2008, v. 71, n. 1, p. 81, doi. 10.1002/prot.21657

By:

Mason, Aaron C.;
Jensen, Jan H.

Publication type:

Article

Structural rationalization of novel drug metabolizing mutants of cytochrome P450 BM3.

Published in:

Proteins, 2008, v. 71, n. 1, p. 336, doi. 10.1002/prot.21697

By:

Stjernschantz, Eva;
van Vugt-Lussenburg, Barbara M. A.;
Bonifacio, Alois;
de Beer, Stephanie B. A.;
van der Zwan, Gert;
Gooijer, Cees;
Commandeur, Jan N. M.;
Vermeulen, Nico P. E.;
Oostenbrink, Chris

Publication type:

Article

Sequence-based protein domain boundary prediction using BP neural network with various property profiles.

Published in:

Proteins, 2008, v. 71, n. 1, p. 300, doi. 10.1002/prot.21745

By:

Ye, Lei;
Liu, Ting;
Wu, Zhaohui;
Zhou, Ruhong

Publication type:

Article

Spontaneous β-barrel formation: An all-atom Monte Carlo study of Aβ<sub>16-22</sub> oligomerization.

Published in:

Proteins, 2008, v. 71, n. 1, p. 207, doi. 10.1002/prot.21682

By:

Irbäck, Anders;
Mitternacht, Simon

Publication type:

Article

Comparison of vertebrate and invertebrate CLIC proteins: The crystal structures of Caenorhabditis elegans EXC-4 and Drosophila melanogaster DmCLIC.

Published in:

Proteins, 2008, v. 71, n. 1, p. 364, doi. 10.1002/prot.21704

By:

Littler, Dene R.;
Harrop, Stephen J.;
Brown, Louise J.;
Pankhurst, Greg J.;
Mynott, Andrew V.;
Luciani, Paolo;
Mandyam, Ramya A.;
Mazzanti, Michele;
Tanda, Soichi;
Berryman, Mark A.;
Breit, Samuel N.;
Curmi, Paul M. G.

Publication type:

Article

Engineering proteins with tunable thermodynamic and kinetic stabilities.

Published in:

Proteins, 2008, v. 71, n. 1, p. 165, doi. 10.1002/prot.21670

By:

Pey, Angel L.;
Rodriguez-Larrea, David;
Bomke, Susanne;
Dammers, Susanne;
Godoy-Ruiz, Raquel;
Garcia-Mira, Maria M.;
Sanchez-Ruiz, Jose M.

Publication type:

Article

QMEAN: A comprehensive scoring function for model quality assessment.

Published in:

Proteins, 2008, v. 71, n. 1, p. 261, doi. 10.1002/prot.21715

By:

Benkert, Pascal;
Tosatto, Silvio C. E.;
Schomburg, Dietmar

Publication type:

Article

The peculiar structural features of kiwi fruit pectin methylesterase: Amino acid sequence, oligosaccharides structure, and modeling of the interaction with its natural proteinaceous inhibitor.

Published in:

Proteins, 2008, v. 71, n. 1, p. 195, doi. 10.1002/prot.21681

By:

Ciardiello, M. Antonietta;
D'Avino, Rossana;
Amoresano, Angela;
Tuppo, Lisa;
Carpentieri, Andrea;
Carratore, Vito;
Tamburrini, Maurizio;
Giovane, Alfonso;
Pucci, Piero;
Camardella, Laura

Publication type:

Article

Predicting the order in which contacts are broken during single molecule protein stretching experiments.

Published in:

Proteins, 2008, v. 71, n. 1, p. 45, doi. 10.1002/prot.21652

By:

Sułkowska, Joanna I.;
Kloczkowski, Andrzej;
Sen, Taner Z.;
Cieplak, Marek;
Jernigan, Robert L.

Publication type:

Article

Cysteine 10 is critical for the activity of Ochrobactrum anthropi glutathione transferase and its mutation to alanine causes the preferential binding of glutathione to the H-site.

Published in:

Proteins, 2008, v. 71, n. 1, p. 16, doi. 10.1002/prot.21835

By:

Allocati, Nerino;
Federici, Luca;
Masulli, Michele;
Favaloro, Bartolo;
Di Ilio, Carmine

Publication type:

Article

Conformation and dynamics of the three-helix bundle UBA domain of p62 from experiment and simulation.

Published in:

Proteins, 2008, v. 71, n. 1, p. 227, doi. 10.1002/prot.21692

By:

Evans, Clare-Louise;
Long, Jed E.;
Gallagher, Thomas R. A.;
Hirst, Jonathan D.;
Searle, Mark S.

Publication type:

Article

Improved model building and assessment of the Calcium-sensing receptor transmembrane domain.

Published in:

Proteins, 2008, v. 71, n. 1, p. 215, doi. 10.1002/prot.21685

By:

Bu, Lintao;
Michino, Mayako;
Wolf, Romain M.;
Brooks, Charles L.

Publication type:

Article

Common occurrence of internal repeat symmetry in membrane proteins.

Published in:

Proteins, 2008, v. 71, n. 1, p. 68, doi. 10.1002/prot.21656

By:

Choi, Sungwon;
Jeon, Jouhyun;
Yang, Jae-Seong;
Kim, Sanguk

Publication type:

Article

Residue conservation in viral capsid assembly.

Published in:

Proteins, 2008, v. 71, n. 1, p. 407, doi. 10.1002/prot.21710

By:

Bahadur, Ranjit P.;
Janin, Joël

Publication type:

Article

Shark IgNAR antibody mimotopes target a murine immunoglobulin through extended CDR3 loop structures.

Published in:

Proteins, 2008, v. 71, n. 1, p. 119, doi. 10.1002/prot.21663

By:

Simmons, David P.;
Streltsov, Victor A.;
Dolezal, Olan;
Hudson, Peter J.;
Coley, Andrew M.;
Foley, Michael;
Proll, David F.;
Nuttall, Stewart D.

Publication type:

Article

Characterization of protein dynamics from residual dipolar couplings using the three dimensional Gaussian axial fluctuation model.

Published in:

Proteins, 2008, v. 71, n. 1, p. 353, doi. 10.1002/prot.21703

By:

Bouvignies, Guillaume;
Markwick, Phineus R. L.;
Blackledge, Martin

Publication type:

Article

Free-energy landscape of kinesin by a realistic lattice model.

Published in:

Proteins, 2008, v. 71, n. 1, p. 389, doi. 10.1002/prot.21707

By:

Kenzaki, Hiroo;
Kikuchi, Macoto

Publication type:

Article

An asymmetric dimer of β-lactoglobulin in a low humidity crystal form-Structural changes that accompany partial dehydration and protein action.

Published in:

Proteins, 2008, v. 71, n. 1, p. 241, doi. 10.1002/prot.21695

By:

Vijayalakshmi, L.;
Krishna, R.;
Sankaranarayanan, R.;
Vijayan, M.

Publication type:

Article

Conformational selection in silico: Loop latching motions and ligand binding in enzymes.

Published in:

Proteins, 2008, v. 71, n. 1, p. 153, doi. 10.1002/prot.21666

By:

Wong, Sergio;
Jacobson, Matthew P.

Publication type:

Article

Prediction of RNA binding sites in a protein using SVM and PSSM profile.

Published in:

Proteins, 2008, v. 71, n. 1, p. 189, doi. 10.1002/prot.21677

By:

Kumar, Manish;
Gromiha, M. Michael;
Raghava, G. P. S.

Publication type:

Article

In silico local structure approach: A case study on Outer Membrane Proteins.

Published in:

Proteins, 2008, v. 71, n. 1, p. 92, doi. 10.1002/prot.21659

By:

Martin, Juliette;
de Brevern, Alexandre G.;
Camproux, Anne-Claude

Publication type:

Article

Altering the laccase functionality by in vivo assembly of mutant libraries with different mutational spectra.

Published in:

Proteins, 2008, v. 71, n. 1, p. 250, doi. 10.1002/prot.21699

By:

Zumárraga, Miren;
Camarero, Susana;
Shleev, Sergey;
Martínez-Arias, Arturo;
Ballesteros, Antonio;
Plou, Francisco J.;
Alcalde, Miguel

Publication type:

Article

A covalent S-F heterodimer of leucotoxin reveals molecular plasticity of β-barrel pore-forming toxins.

Published in:

Proteins, 2008, v. 71, n. 1, p. 485, doi. 10.1002/prot.21900

By:

Roblin, Pierre;
Guillet, Valérie;
Joubert, Olivier;
Keller, Daniel;
Erard, Monique;
Maveyraud, Laurent;
Prévost, Gilles;
Mourey, Lionel

Publication type:

Article

The crystal structure of human chloride intracellular channel protein 2: A disulfide bond with functional implications.

Published in:

Proteins, 2008, v. 71, n. 1, p. 509, doi. 10.1002/prot.21922

By:

Mi, Wei;
Liang, Yu-He;
Li, Lanfen;
Su, Xiao-Dong

Publication type:

Article

Solution structure of human DESR1, a CSL zinc-binding protein.

Published in:

Proteins, 2008, v. 71, n. 1, p. 514, doi. 10.1002/prot.21915

By:

Wu, Fangming;
Zhang, Jiahai;
Sun, Jianping;
Huang, Hongda;
Ji, Peng;
Chu, Wangsheng;
Yu, Meijuan;
Yang, Feifei;
Wu, Ziyu;
Wu, Jihui;
Shi, Yunyu

Publication type:

Article

An efficient conformational sampling method for homology modeling.

Published in:

Proteins, 2008, v. 71, n. 1, p. 175, doi. 10.1002/prot.21672

By:

Han, Rongsheng;
Leo-Macias, Alejandra;
Zerbino, Daniel;
Bastolla, Ugo;
Contreras-Moreira, Bruno;
Ortiz, Angel R.

Publication type:

Article

Crystal structure of N-acylamino acid racemase from Thermus thermophilus HB8.

Published in:

Proteins, 2008, v. 71, n. 1, p. 519, doi. 10.1002/prot.21926

By:

Hayashida, Minoru;
Kim, Seong-Hoon;
Takeda, Kazuki;
Hisano, Tamao;
Miki, Kunio

Publication type:

Article

Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimer.

Published in:

Proteins, 2008, v. 71, n. 1, p. 1, doi. 10.1002/prot.21720

By:

Clapier, Cedric R.;
Chakravarthy, Srinivas;
Petosa, Carlo;
Fernández-Tornero, Carlos;
Luger, Karolin;
Müller, Christoph W.

Publication type:

Article

First crystallographic models of human TBC domains in the context of a family-wide structural analysis.

Published in:

Proteins, 2008, v. 71, n. 1, p. 497, doi. 10.1002/prot.21885

By:

Tempel, Wolfram;
Tong, Yufeng;
Dimov, Svetoslav;
Bochkarev, Alexey;
Park, Heewon

Publication type:

Article

Zinc binding of Tim10: Evidence for existence of an unstructured binding intermediate for a zinc finger protein.

Published in:

Proteins, 2008, v. 71, n. 1, p. 467, doi. 10.1002/prot.21713

By:

Ivanova, Ekaterina;
Ball, Matthew;
Lu, Hui

Publication type:

Article

In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin.

Published in:

Proteins, 2008, v. 71, n. 1, p. 24, doi. 10.1002/prot.21841

By:

Cherezov, Vadim;
Liu, Wei;
Derrick, Jeremy P.;
Luan, Binquan;
Aksimentiev, Aleksei;
Katritch, Vsevolod;
Caffrey, Martin

Publication type:

Article

The geometry of α-sheet: Implications for its possible function as amyloid precursor in proteins.

Published in:

Proteins, 2008, v. 71, n. 1, p. 415, doi. 10.1002/prot.21717

By:

Hayward, Steven;
Milner-White, E. James

Publication type:

Article

Contact rearrangements form coupled networks from local motions in allosteric proteins.

Published in:

Proteins, 2008, v. 71, n. 1, p. 455, doi. 10.1002/prot.21800

By:

Daily, Michael D.;
Upadhyaya, Tarak J.;
Gray, Jeffrey J.

Publication type:

Article

Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks.

Published in:

Proteins, 2008, v. 71, n. 1, p. 61, doi. 10.1002/prot.21654

By:

Zhang, Wei;
Dunker, A. Keith;
Zhou, Yaoqi

Publication type:

Article

N-linked glycans of the human insulin receptor and their distribution over the crystal structure.

Published in:

Proteins, 2008, v. 71, n. 1, p. 426, doi. 10.1002/prot.21768

By:

Sparrow, Lindsay G.;
Lawrence, Michael C.;
Gorman, Jeffrey J.;
Strike, Phillip M.;
Robinson, Christine P.;
McKern, Neil M.;
Ward, Colin W.

Publication type:

Article

Large-scale characteristics of the energy landscape in protein-protein interactions.

Published in:

Proteins, 2008, v. 71, n. 1, p. 144, doi. 10.1002/prot.21665

By:

O'Toole, Nicholas;
Vakser, Ilya A.

Publication type:

Article

Hydrophobic interactions and ionic networks play an important role in thermal stability and denaturation mechanism of the porcine odorant-binding protein.

Published in:

Proteins, 2008, v. 71, n. 1, p. 35, doi. 10.1002/prot.21658

By:

Stepanenko, Olesya V.;
Marabotti, Anna;
Kuznetsova, Irina M.;
Turoverov, Konstantin K.;
Fini, Carlo;
Varriale, Antonio;
Staiano, Maria;
Rossi, Mose';
D'Auria, Sabato

Publication type:

Article

Methylene substitution at the α-β bridging position within the phosphate chain of dUDP profoundly perturbs ligand accommodation into the dUTPase active site.

Published in:

Proteins, 2008, v. 71, n. 1, p. 308, doi. 10.1002/prot.21757

By:

Kovári, Júlia;
Barabás, Orsolya;
Varga, Balázs;
Békési, Angéla;
Tölgyesi, Ferenc;
Fidy, Judit;
Nagy, József;
Vértessy, Beáta G.

Publication type:

Article