Works matching IS 08873585 AND DT 2008 AND VI 70 AND IP 3
Results: 47
Molecular basis of inhibitory peptide maurotoxin recognizing Kv1.2 channel explored by ZDOCK and molecular dynamic simulations.
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- Proteins, 2008, v. 70, n. 3, p. 844, doi. 10.1002/prot.21706
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- Article
Structural characterization of the zinc binding domain in cytosolic PSD-95 interactor (cypin): Role of zinc binding in guanine deamination and dendrite branching.
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- Proteins, 2008, v. 70, n. 3, p. 873, doi. 10.1002/prot.21683
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Solution structure of the β-subunit of the translation initiation factor aIF2 from archaebacteria Sulfolobus solfataricus.
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- Proteins, 2008, v. 70, n. 3, p. 1112, doi. 10.1002/prot.21797
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Epitope mapping and structural analysis of an anti-ErbB2 antibody A21: Molecular basis for tumor inhibitory mechanism.
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- Proteins, 2008, v. 70, n. 3, p. 938, doi. 10.1002/prot.21551
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Structural and enzymatic characterization of DR1281: A calcineurin-like phosphoesterase from Deinococcus radiodurans.
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- Proteins, 2008, v. 70, n. 3, p. 1000, doi. 10.1002/prot.21584
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A coarse-grained α-carbon protein model with anisotropic hydrogen-bonding.
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- Proteins, 2008, v. 70, n. 3, p. 626, doi. 10.1002/prot.21515
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Proton pathways in a [NiFe]-hydrogenase: A theoretical study.
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- Proteins, 2008, v. 70, n. 3, p. 1010, doi. 10.1002/prot.21588
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Denatured state is critical in determining the properties of model proteins designed on different folds.
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- Proteins, 2008, v. 70, n. 3, p. 1047, doi. 10.1002/prot.21599
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A statistical rescoring scheme for protein-ligand docking: Consideration of entropic effect.
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- Proteins, 2008, v. 70, n. 3, p. 1074, doi. 10.1002/prot.21844
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New insight into long-range nonadditivity within protein double-mutant cycles.
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- Proteins, 2008, v. 70, n. 3, p. 915, doi. 10.1002/prot.21620
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Conformational flexibility in mammalian 15S-lipoxygenase: Reinterpretation of the crystallographic data.
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- Proteins, 2008, v. 70, n. 3, p. 1023, doi. 10.1002/prot.21590
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Distance dependent centroid to centroid force fields using high resolution decoys.
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- Proteins, 2008, v. 70, n. 3, p. 950, doi. 10.1002/prot.21561
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Comment on probe-dependent and nonexponential relaxation kinetics: Unreliable signatures of downhill protein folding.
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- Proteins, 2008, v. 70, n. 3, p. 1099, doi. 10.1002/prot.21789
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- Article
Electrospray ionization mass spectrometry of soybean lipoxygenases: N-terminal acetylation, chemical modification, and solution conformation.
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- Proteins, 2008, v. 70, n. 3, p. 650, doi. 10.1002/prot.21543
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- Article
Computational design and experimental study of tighter binding peptides to an inactivated mutant of HIV-1 protease.
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- Proteins, 2008, v. 70, n. 3, p. 678, doi. 10.1002/prot.21514
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- Article
An evolutionary and structure-based docking model for glucocerebrosidase-saposin C and glucocerebrosidase-substrate interactions-Relevance for Gaucher disease.
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- Proteins, 2008, v. 70, n. 3, p. 882, doi. 10.1002/prot.21554
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Lattice simulations of cotranslational folding of single domain proteins.
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- Proteins, 2008, v. 70, n. 3, p. 925, doi. 10.1002/prot.21547
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Membrane-bound structure and energetics of α-synuclein.
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- Proteins, 2008, v. 70, n. 3, p. 761, doi. 10.1002/prot.21558
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Dopamine transporter comparative molecular modeling and binding site prediction using the LeuT<sub>Aa</sub> leucine transporter as a template.
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- Proteins, 2008, v. 70, n. 3, p. 1033, doi. 10.1002/prot.21598
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Surface recognition elements of membrane protein oligomerization.
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- Proteins, 2008, v. 70, n. 3, p. 786, doi. 10.1002/prot.21569
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Loop modeling: Sampling, filtering, and scoring.
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- Proteins, 2008, v. 70, n. 3, p. 834, doi. 10.1002/prot.21612
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Mutagenesis study of rice nonspecific lipid transfer protein 2 reveals residues that contribute to structure and ligand binding.
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- Proteins, 2008, v. 70, n. 3, p. 695, doi. 10.1002/prot.21520
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The role of Li<sup>+</sup>, Na<sup>+</sup>, and K<sup>+</sup> in the ligand binding inside the human acetylcholinesterase gorge.
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- Proteins, 2008, v. 70, n. 3, p. 779, doi. 10.1002/prot.21560
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Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins.
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- Proteins, 2008, v. 70, n. 3, p. 971, doi. 10.1002/prot.21571
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Molecular determinants of sarco/endoplasmic reticulum calcium ATPase inhibition by hydroquinone-based compounds.
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- Proteins, 2008, v. 70, n. 3, p. 639, doi. 10.1002/prot.21542
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Residual structure in disordered peptides and unfolded proteins from multivariate analysis and ab initio simulation of Raman optical activity data.
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- Proteins, 2008, v. 70, n. 3, p. 823, doi. 10.1002/prot.21593
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- Article
TPR domain of NrfG mediates complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia coli O157:H7.
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- Proteins, 2008, v. 70, n. 3, p. 900, doi. 10.1002/prot.21597
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MAAP: Malarial adhesins and adhesin-like proteins predictor.
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- Proteins, 2008, v. 70, n. 3, p. 659, doi. 10.1002/prot.21568
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Molecular dynamics simulations of HIV-1 protease monomer: Assembly of N-terminus and C-terminus into β-sheet in water solution.
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- Proteins, 2008, v. 70, n. 3, p. 731, doi. 10.1002/prot.21539
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Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking.
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- Proteins, 2008, v. 70, n. 3, p. 794, doi. 10.1002/prot.21579
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Solution structure and neutralizing antibody binding studies of domain III of the dengue-2 virus envelope protein.
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- Proteins, 2008, v. 70, n. 3, p. 1116, doi. 10.1002/prot.21806
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Context shapes: Efficient complementary shape matching for protein-protein docking.
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- Proteins, 2008, v. 70, n. 3, p. 1056, doi. 10.1002/prot.21600
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X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7.
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- Proteins, 2008, v. 70, n. 3, p. 1108, doi. 10.1002/prot.21794
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Crystal structure of TTHA0303 (TT2238), a four-helix bundle protein with an exposed histidine triad from Thermus thermophilus HB8 at 2.0 Å.
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- Proteins, 2008, v. 70, n. 3, p. 1103, doi. 10.1002/prot.21765
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Copper binding sites in the C-terminal domain of mouse prion protein: A hybrid (QM/MM) molecular dynamics study.
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- Proteins, 2008, v. 70, n. 3, p. 1084, doi. 10.1002/prot.21604
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- Article
Lipoprotein lipase: A bioinformatics criterion for assessment of mutations as a risk factor for cardiovascular disease.
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- Proteins, 2008, v. 70, n. 3, p. 855, doi. 10.1002/prot.21581
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- Article
Conformational stability and DNA binding energetics of the rat thyroid transcription factor 1 homeodomain.
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- Proteins, 2008, v. 70, n. 3, p. 748, doi. 10.1002/prot.21552
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GRID-MD-A tool for massive simulation of protein channels.
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- Proteins, 2008, v. 70, n. 3, p. 892, doi. 10.1002/prot.21592
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Second step of hydrolytic dehalogenation in haloalkane dehalogenase investigated by QM/MM methods.
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- Proteins, 2008, v. 70, n. 3, p. 707, doi. 10.1002/prot.21523
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- Article
Crystal structure of the flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8: Structural basis for the flavin affinity.
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- Proteins, 2008, v. 70, n. 3, p. 718, doi. 10.1002/prot.21534
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Computational studies of the structure, dynamics and native content of amyloid-like fibrils of ribonuclease A.
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- Proteins, 2008, v. 70, n. 3, p. 863, doi. 10.1002/prot.21648
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Predicting transmembrane helix pair configurations with knowledge-based distance-dependent pair potentials.
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- Proteins, 2008, v. 70, n. 3, p. 984, doi. 10.1002/prot.21574
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Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
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- Proteins, 2008, v. 70, n. 3, p. 611, doi. 10.1002/prot.21688
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- Article
Electrostatic contribution to the thermodynamic and kinetic stability of the homotrimeric coiled coil Lpp-56: A computational study.
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- Proteins, 2008, v. 70, n. 3, p. 810, doi. 10.1002/prot.21585
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- Article
A chirality index for investigating protein secondary structures and their time evolution.
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- Proteins, 2008, v. 70, n. 3, p. 667, doi. 10.1002/prot.21578
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- Article
A complete library of amino acid alterations at R306 in Streptomyces clavuligerus deacetoxycephalosporin C synthase demonstrates its structural role in the ring-expansion activity.
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- Proteins, 2008, v. 70, n. 3, p. 739, doi. 10.1002/prot.21549
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Structure and biochemical analysis of Kokobera virus helicase.
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- Proteins, 2008, v. 70, n. 3, p. 1120, doi. 10.1002/prot.21812
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- Article