Works matching IS 08873585 AND DT 2007 AND VI 69 AND IP 2

Results: 23

Solution structure of the hypothetical novel-fold protein TA0956 from Thermoplasma acidophilum.

Published in:

Proteins, 2007, v. 69, n. 2, p. 444, doi. 10.1002/prot.21490

By:

Koo, Bon-Kyung;
Jung, Jinwon;
Jung, Hyunseob;
Nam, Hyung Wook;
Kim, Yu Sam;
Yee, Adelinda;
Lee, Weontae

Publication type:

Article

NMR study and molecular dynamics simulations of optimized β-hairpin fragments of protein G.

Published in:

Proteins, 2007, v. 69, n. 2, p. 285, doi. 10.1002/prot.21494

By:

Wei, Yun;
Huyghues-Despointes, Beatrice M. P.;
Tsai, Jerry;
Scholtz, J. Martin

Publication type:

Article

A novel approach to local similarity of protein binding sites substantially improves computational drug design results.

Published in:

Proteins, 2007, v. 69, n. 2, p. 349, doi. 10.1002/prot.21487

By:

Ramensky, Vasily;
Sobol, Alexandr;
Zaitseva, Natalia;
Rubinov, Anatoly;
Zosimov, Victor

Publication type:

Article

A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys.

Published in:

Proteins, 2007, v. 69, n. 2, p. 244, doi. 10.1002/prot.21498

By:

Liang, Shide;
Liu, Song;
Zhang, Chi;
Zhou, Yaoqi

Publication type:

Article

Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans.

Published in:

Proteins, 2007, v. 69, n. 2, p. 409, doi. 10.1002/prot.21292

By:

Xu, Qian Steven;
Ankoudinova, Irina;
Lou, Yun;
Yokota, Hisao;
Kim, Rosalind;
Kim, Sung-Hou

Publication type:

Article

A model of the complex between the PfEMP1 malaria protein and the human ICAM-1 receptor.

Published in:

Proteins, 2007, v. 69, n. 2, p. 215, doi. 10.1002/prot.21691

By:

Bertonati, Claudia;
Tramontano, Anna

Publication type:

Article

Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.

Published in:

Proteins, 2007, v. 69, n. 2, p. 234, doi. 10.1002/prot.21673

By:

Zubieta, Chloe;
Joseph, Rosanne;
Sri Krishna, S.;
McMullan, Daniel;
Kapoor, Mili;
Axelrod, Herbert L.;
Miller, Mitchell D.;
Abdubek, Polat;
Acosta, Claire;
Astakhova, Tamara;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
Deller, Marc C.;
Duan, Lian;
Elias, Ylva;
Elsliger, Marc-André;
Feuerhelm, Julie;
Grzechnik, Slawomir K.;
Hale, Joanna

Publication type:

Article

A coarse-grained protein force field for folding and structure prediction.

Published in:

Proteins, 2007, v. 69, n. 2, p. 394, doi. 10.1002/prot.21505

By:

Maupetit, Julien;
Tuffery, P.;
Derreumaux, Philippe

Publication type:

Article

Hallmarks of mycolic acid biosynthesis: A comparative genomics study.

Published in:

Proteins, 2007, v. 69, n. 2, p. 358, doi. 10.1002/prot.21591

By:

Raman, Karthik;
Rajagopalan, Preethi;
Chandra, Nagasuma

Publication type:

Article

Ideal amino acid exchange forms for approximating substitution matrices.

Published in:

Proteins, 2007, v. 69, n. 2, p. 379, doi. 10.1002/prot.21509

By:

Pokarowski, Piotr;
Kloczkowski, Andrzej;
Nowakowski, Szymon;
Pokarowska, Maria;
Jernigan, Robert L.;
Kolinski, Andrzej

Publication type:

Article

Crystal structure of an acetyltransferase protein from Vibrio cholerae strain N16961.

Published in:

Proteins, 2007, v. 69, n. 2, p. 422, doi. 10.1002/prot.21417

By:

Cuff, M.E.;
Li, H.;
Moy, S.;
Watson, J.;
Cipriani, A.;
Joachimiak, A.

Publication type:

Article

Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 Å resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases.

Published in:

Proteins, 2007, v. 69, n. 2, p. 415, doi. 10.1002/prot.21314

By:

Krishna, S. Sri;
Tautz, Lutz;
Xu, Qingping;
McMullan, Daniel;
Miller, Mitchell D.;
Abdubek, Polat;
Ambing, Eileen;
Astakhova, Tamara;
Axelrod, Herbert L.;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
DiDonato, Michael;
Duan, Lian;
Elsliger, Marc-André;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Han, Gye Won;
Haugen, Justin

Publication type:

Article

QM/MM linear response method distinguishes ligand affinities for closely related metalloproteins.

Published in:

Proteins, 2007, v. 69, n. 2, p. 326, doi. 10.1002/prot.21500

By:

Khandelwal, Akash;
Balaz, Stefan

Publication type:

Article

Mass spectrometry analysis of HIV-1 Vif reveals an increase in ordered structure upon oligomerization in regions necessary for viral infectivity.

Published in:

Proteins, 2007, v. 69, n. 2, p. 270, doi. 10.1002/prot.21471

By:

Auclair, Jared R.;
Green, Karin M.;
Shandilya, Shivender;
Evans, James E.;
Somasundaran, Mohan;
Schiffer, Celia A.

Publication type:

Article

Specificity of helix packing in transmembrane dimer of the cell death factor BNIP3: A molecular modeling study.

Published in:

Proteins, 2007, v. 69, n. 2, p. 309, doi. 10.1002/prot.21555

By:

Vereshaga, Yana A.;
Volynsky, Pavel E.;
Pustovalova, Julia E.;
Nolde, Dmitry E.;
Arseniev, Alexander S.;
Efremov, Roman G.

Publication type:

Article

Monte carlo folding of trans-membrane helical peptides in an implicit generalized Born membrane.

Published in:

Proteins, 2007, v. 69, n. 2, p. 297, doi. 10.1002/prot.21519

By:

Ulmschneider, Jakob P.;
Ulmschneider, Martin B.;
Di Nola, Alfredo

Publication type:

Article

Annexin A2/P11 interaction: New insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling.

Published in:

Proteins, 2007, v. 69, n. 2, p. 254, doi. 10.1002/prot.21445

By:

Schulz, Daniela M.;
Kalkhof, Stefan;
Schmidt, Andreas;
Ihling, Christian;
Stingl, Christoph;
Mechtler, Karl;
Zschörnig, Olaf;
Sinz, Andrea

Publication type:

Article

Simulated annealing exploration of an active-site tyrosine in TEM-1β-lactamase suggests the existence of alternate conformations.

Published in:

Proteins, 2007, v. 69, n. 2, p. 340, doi. 10.1002/prot.21485

By:

Doucet, Nicolas;
Pelletier, Joelle N.

Publication type:

Article

Protein-thiol substitution or protein dethiolation by thiol/disulfide exchange reactions: The albumin model.

Published in:

Proteins, 2007, v. 69, n. 2, p. 369, doi. 10.1002/prot.21532

By:

Summa, Domenico;
Spiga, Ottavia;
Bernini, Andrea;
Venditti, Vincenzo;
Priora, Raffaella;
Frosali, Simona;
Margaritis, Antonios;
Giuseppe, Danila Di;
Niccolai, Neri;
Simplicio, Paolo Di

Publication type:

Article

Crystal structure of Dim2p: A preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 Å.

Published in:

Proteins, 2007, v. 69, n. 2, p. 428, doi. 10.1002/prot.21381

By:

Jia, Min Ze;
Ohtsuka, Jun;
Lee, Woo Cheol;
Nagata, Koji;
Tanokura, Masaru

Publication type:

Article

Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 Å resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.

Published in:

Proteins, 2007, v. 69, n. 2, p. 433, doi. 10.1002/prot.21602

By:

Xu, Qingping;
Saikatendu, Kumar Singh;
Krishna, S. Sri;
McMullan, Daniel;
Abdubek, Polat;
Agarwalla, Sanjay;
Ambing, Eileen;
Astakhova, Tamara;
Axelrod, Herbert L.;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
DiDonato, Michael;
Duan, Lian;
Elsliger, Marc-André;
Feuerhelm, Julie;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Han, Gye Won

Publication type:

Article

Crystal structures of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme-binding motif.

Published in:

Proteins, 2007, v. 69, n. 2, p. 223, doi. 10.1002/prot.21550

By:

Zubieta, Chloe;
Krishna, S. Sri;
Kapoor, Mili;
Kozbial, Piotr;
McMullan, Daniel;
Axelrod, Herbert L.;
Miller, Mitchell D.;
Abdubek, Polat;
Ambing, Eileen;
Astakhova, Tamara;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
Deller, Marc C.;
Duan, Lian;
Elsliger, Marc-André;
Feuerhelm, Julie;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric

Publication type:

Article

The crystal structure of CagS from the Helicobacter pylori pathogenicity island.

Published in:

Proteins, 2007, v. 69, n. 2, p. 440, doi. 10.1002/prot.21576

By:

Cendron, Laura;
Tasca, Elisabetta;
Seraglio, Tommaso;
Seydel, Anke;
Angelini, Alessandro;
Battistutta, Roberto;
Montecucco, Cesare;
Zanotti, Giuseppe

Publication type:

Article