Works matching IS 08873585 AND DT 2006 AND VI 65 AND IP 1

Results: 26

Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.

Published in:

Proteins, 2006, v. 65, n. 1, p. 203, doi. 10.1002/prot.21091

By:

Potluri, Shobha;
Yan, Anthony K.;
Chou, James J.;
Donald, Bruce R.;
Bailey-Kellogg, Chris

Publication type:

Article

Exploring the relationship between funneled energy landscapes and two-state protein folding.

Published in:

Proteins, 2006, v. 65, n. 1, p. 153, doi. 10.1002/prot.21080

By:

Konermann, Lars

Publication type:

Article

Better prediction of the location of α-turns in proteins with support vector machine.

Published in:

Proteins, 2006, v. 65, n. 1, p. 49, doi. 10.1002/prot.21062

By:

Wang, Yan;
Xue, Zhidong;
Xu, Jin

Publication type:

Article

Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis.

Published in:

Proteins, 2006, v. 65, n. 1, p. 255, doi. 10.1002/prot.21073

By:

Rajan, Shyamala S.;
Yang, Xiaojing;
Shuvalova, Ludmilla;
Collart, Frank;
Anderson, Wayne F.

Publication type:

Article

Characterization of the residual structure in the unfolded state of the Δ131Δ fragment of staphylococcal nuclease.

Published in:

Proteins, 2006, v. 65, n. 1, p. 145, doi. 10.1002/prot.21077

By:

Francis, Christopher J.;
Lindorff-Larsen, Kresten;
Best, Robert B.;
Vendruscolo, Michele

Publication type:

Article

Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity.

Published in:

Proteins, 2006, v. 65, n. 1, p. 231, doi. 10.1002/prot.21088

By:

Sun, Siyang;
Geng, Linda;
Shamoo, Yousif

Publication type:

Article

Multi-template approach to modeling engineered disulfide bonds.

Published in:

Proteins, 2006, v. 65, n. 1, p. 192, doi. 10.1002/prot.21059

By:

Pellequer, Jean-Luc;
Chen, Shu-wen W.

Publication type:

Article

Crystal structures of the PLP- and PMP-bound forms of BtrR, a dual functional aminotransferase involved in butirosin biosynthesis.

Published in:

Proteins, 2006, v. 65, n. 1, p. 220, doi. 10.1002/prot.21076

By:

Popovic, Bojana;
Tang, Xiao;
Chirgadze, Dimitri Y.;
Huang, Fanglu;
Blundell, Tom L.;
Spencer, Jonathan B.

Publication type:

Article

Starch-synthase III family encodes a tandem of three starch-binding domains.

Published in:

Proteins, 2006, v. 65, n. 1, p. 27, doi. 10.1002/prot.21007

By:

Palopoli, Nicolás;
Busi, María Victoria;
Fornasari, María Silvina;
Gomez-Casati, Diego;
Ugalde, Rodolfo;
Parisi, Gustavo

Publication type:

Article

Protein-ligand docking: Current status and future challenges.

Published in:

Proteins, 2006, v. 65, n. 1, p. 15, doi. 10.1002/prot.21082

By:

Sousa, Sérgio Filipe;
Fernandes, Pedro Alexandrino;
Ramos, Maria João

Publication type:

Article

A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Published in:

Proteins, 2006, v. 65, n. 1, p. 32, doi. 10.1002/prot.21087

By:

Tyagi, Manoj;
Gowri, Venkataraman S.;
Srinivasan, Narayanaswamy;
de Brevern, Alexandre G.;
Offmann, Bernard

Publication type:

Article

Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites.

Published in:

Proteins, 2006, v. 65, n. 1, p. 111, doi. 10.1002/prot.21101

By:

Yao, Hui;
Mihalek, Ivana;
Lichtarge, Olivier

Publication type:

Article

Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations.

Published in:

Proteins, 2006, v. 65, n. 1, p. 164, doi. 10.1002/prot.21060

By:

Shehu, Amarda;
Clementi, Cecilia;
Kavraki, Lydia E.

Publication type:

Article

Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 Å resolution.

Published in:

Proteins, 2006, v. 65, n. 1, p. 249, doi. 10.1002/prot.21024

By:

Mathews, Irimpan I.;
Krishna, S. Sri;
Schwarzenbacher, Robert;
McMullan, Daniel;
Jaroszewski, Lukasz;
Miller, Mitchell D.;
Abdubek, Polat;
Agarwalla, Sanjay;
Ambing, Eileen;
Axelrod, Herbert L.;
Canaves, Jaume M.;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
DiDonato, Michael;
Duan, Lian;
Elsliger, Marc-André;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric

Publication type:

Article

Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 Å resolution reveals a new fold.

Published in:

Proteins, 2006, v. 65, n. 1, p. 243, doi. 10.1002/prot.21058

By:

Schwarzenbacher, Robert;
McMullan, Daniel;
Krishna, S. Sri;
Xu, Qingping;
Miller, Mitchell D.;
Canaves, Jaume M.;
Elsliger, Marc-André;
Floyd, Ross;
Grzechnik, Slawomir K.;
Jaroszewski, Lukasz;
Klock, Heath E.;
Koesema, Eric;
Kovarik, John S.;
Kreusch, Andreas;
Kuhn, Peter;
McPhillips, Timothy M.;
Morse, Andrew T.;
Quijano, Kevin;
Spraggon, Glen;
Stevens, Raymond C.

Publication type:

Article

Computational exploration of the activated pathways associated with DNA damage response in breast cancer.

Published in:

Proteins, 2006, v. 65, n. 1, p. 103, doi. 10.1002/prot.21064

By:

Wen, Liting;
Li, Wei;
Sobel, Marc;
Feng, Jin-an

Publication type:

Article

Electrostatic contribution to the binding stability of protein-protein complexes.

Published in:

Proteins, 2006, v. 65, n. 1, p. 87, doi. 10.1002/prot.21070

By:

Dong, Feng;
Zhou, Huan-Xiang

Publication type:

Article

Predicting transmembrane β-barrels and interstrand residue interactions from sequence.

Published in:

Proteins, 2006, v. 65, n. 1, p. 61, doi. 10.1002/prot.21046

By:

Waldispühl, J.;
Berger, Bonnie;
Clote, Peter;
Steyaert, Jean-Marc

Publication type:

Article

The crystal structure of XC1739: A putative multiple antibiotic-resistance repressor (MarR) from Xanthomonas campestris at 1.8 Å resolution.

Published in:

Proteins, 2006, v. 65, n. 1, p. 239, doi. 10.1002/prot.21017

By:

Chin, Ko-Hsin;
Tu, Zhi-Le;
Li, Juo-Ning;
Chou, Chia-Cheng;
Wang, Andrew H.-J.;
Chou, Shan-Ho

Publication type:

Article

Predicting G-protein coupled receptors-G-protein coupling specificity based on autocross-covariance transform.

Published in:

Proteins, 2006, v. 65, n. 1, p. 55, doi. 10.1002/prot.21097

By:

Guo, Yanzhi;
Li, Menglong;
Lu, Minchun;
Wen, Zhining;
Huang, Zhongtian

Publication type:

Article

Structures of soluble amyloid oligomers from computer simulations.

Published in:

Proteins, 2006, v. 65, n. 1, p. 180, doi. 10.1002/prot.21100

By:

Melquiond, Adrien;
Mousseau, Normand;
Derreumaux, Philippe

Publication type:

Article

A practical overview of protein disorder prediction methods.

Published in:

Proteins, 2006, v. 65, n. 1, p. 1, doi. 10.1002/prot.21075

By:

Ferron, François;
Longhi, Sonia;
Canard, Bruno;
Karlin, David

Publication type:

Article

Comparison of protein active site structures for functional annotation of proteins and drug design.

Published in:

Proteins, 2006, v. 65, n. 1, p. 124, doi. 10.1002/prot.21092

By:

Powers, Robert;
Copeland, Jennifer C.;
Germer, Katherine;
Mercier, Kelly A.;
Ramanathan, Viswanathan;
Revesz, Peter

Publication type:

Article

Protein under pressure: Molecular dynamics simulation of the arc repressor.

Published in:

Proteins, 2006, v. 65, n. 1, p. 136, doi. 10.1002/prot.21034

By:

Trzesniak, Daniel;
Lins, Roberto D.;
van Gunsteren, Wilfred F.

Publication type:

Article

Exploring the environmental preference of weak interactions in (α/β)<sub>8</sub> barrel proteins.

Published in:

Proteins, 2006, v. 65, n. 1, p. 75, doi. 10.1002/prot.21067

By:

Chakkaravarthi, S.;
Babu, M. Madan;
Gromiha, M. Michael;
Jayaraman, G.;
Sethumadhavan, R.

Publication type:

Article

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.

Published in:

Proteins, 2006, v. 65, n. 1, p. 40, doi. 10.1002/prot.21078

By:

Saha, Sudipto;
Raghava, G. P. S.

Publication type:

Article