Works matching IS 08873585 AND DT 2006 AND VI 64 AND IP 4

Results: 26

Crystal structure of the apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: A basis for the substrate-induced conformational changes.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1078, doi. 10.1002/prot.20927

By:

Lee, Jun Hyuck;
Na, Young;
Song, Hye-Eun;
Kim, Dooil;
Park, Bo-Hyun;
Rho, Seong-Hwan;
Im, Young Jun;
Kim, Mun-Kyoung;
Kang, Gil Bu;
Lee, Dae-Sil;
Eom, Soo Hyun

Publication type:

Article

Combining functional and topological properties to identify core modules in protein interaction networks.

Published in:

Proteins, 2006, v. 64, n. 4, p. 948, doi. 10.1002/prot.21071

By:

Lubovac, Zelmina;
Gamalielsson, Jonas;
Olsson, Björn

Publication type:

Article

Molecular simulations reveal a new entry site in quercetin 2,3-dioxygenase. A pathway for dioxygen?

Published in:

Proteins, 2006, v. 64, n. 4, p. 845, doi. 10.1002/prot.21042

By:

Fiorucci, Sébastien;
Golebiowski, Jérôme;
Cabrol-Bass, Daniel;
Antonczak, Serge

Publication type:

Article

The DC-module of doublecortin: Dynamics, domain boundaries, and functional implications.

Published in:

Proteins, 2006, v. 64, n. 4, p. 874, doi. 10.1002/prot.21068

By:

Cierpicki, Tomasz;
Kim, Myung Hee;
Cooper, David R.;
Derewenda, Urszula;
Bushweller, John H.;
Derewenda, Zygmunt S.

Publication type:

Article

Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires'.

Published in:

Proteins, 2006, v. 64, n. 4, p. 851, doi. 10.1002/prot.21039

By:

Kumaran, Desigan;
Bonanno, Jeffrey B.;
Burley, Stephen K.;
Swaminathan, Subramanyam

Publication type:

Article

The guanidino-group modifying enzymes: Structural basis for their diversity and commonality.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1010, doi. 10.1002/prot.20863

By:

Shirai, Hiroki;
Mokrab, Younes;
Mizuguchi, Kenji

Publication type:

Article

Solution structure of TA1092, a ribosomal protein S24e from Thermoplasma acidophilum.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1095, doi. 10.1002/prot.21045

By:

Jeon, Byoung-Young;
Jung, Jinwon;
Kim, Dae-Won;
Yee, Adelinda;
Arrowsmith, Cheryl H.;
Lee, Weontae

Publication type:

Article

The barrier for proton transport in aquaporins as a challenge for electrostatic models: The role of protein relaxation in mutational calculations.

Published in:

Proteins, 2006, v. 64, n. 4, p. 829, doi. 10.1002/prot.21012

By:

Kato, Mitsunori;
Pisliakov, Andrei V.;
Warshel, Arieh

Publication type:

Article

Structural characterization of the Acetobacter xylinum endo-β-1,4-glucanase CMCax required for cellulose biosynthesis.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1069, doi. 10.1002/prot.21052

By:

Yasutake, Yoshiaki;
Kawano, Shin;
Tajima, Kenji;
Yao, Min;
Satoh, Yasuharu;
Munekata, Masanobu;
Tanaka, Isao

Publication type:

Article

Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 Å resolution.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1083, doi. 10.1002/prot.20950

By:

Han, Gye Won;
Sri Krishna, S.;
Schwarzenbacher, Robert;
McMullan, Daniel;
Ginalski, Krzysztof;
Elsliger, Marc-André;
Brittain, Scott M.;
Abdubek, Polat;
Agarwalla, Sanjay;
Ambing, Eileen;
Astakhova, Tamara;
Axelrod, Herbert;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
DiDonato, Michael;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Haugen, Justin;
Jaroszewski, Lukasz

Publication type:

Article

Evolutionary identification of a subtype specific functional site in the ligand binding domain of steroid receptors.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1046, doi. 10.1002/prot.21074

By:

Raviscioni, Michele;
He, Qiang;
Salicru, Eleni M.;
Smith, Carolyn L.;
Lichtarge, Olivier

Publication type:

Article

Defining the fold space of membrane proteins: The CAMPS database.

Published in:

Proteins, 2006, v. 64, n. 4, p. 906, doi. 10.1002/prot.21081

By:

Martin-Galiano, Antonio J.;
Frishman, Dmitrij

Publication type:

Article

Amino acid residues that determine functional specificity of NADP- and NAD-dependent isocitrate and isopropylmalate dehydrogenases.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1001, doi. 10.1002/prot.21027

By:

Kalinina, Olga V.;
Gelfand, Mikhail S.

Publication type:

Article

STRUCTFAST: Protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring.

Published in:

Proteins, 2006, v. 64, n. 4, p. 960, doi. 10.1002/prot.21049

By:

Debe, Derek A.;
Danzer, Joseph F.;
Goddard, William A.;
Poleksic, Aleksandar

Publication type:

Article

Determination of dihedral Ψ angles in large proteins by combining NHN/CαHα dipole/dipole cross-correlation and chemical shifts.

Published in:

Proteins, 2006, v. 64, n. 4, p. 931, doi. 10.1002/prot.21063

By:

Loth, Karine;
Abergel, Daniel;
Pelupessy, Philippe;
Delarue, Marc;
Lopes, Philippe;
Ouazzani, Jamal;
Duclert-Savatier, Nathalie;
Nilges, Michael;
Bodenhausen, Geoffrey;
Stoven, Véronique

Publication type:

Article

Old fold in a new X-ray diffraction dataset? Low-resolution molecular replacement using representative structural templates can provide phase information.

Published in:

Proteins, 2006, v. 64, n. 4, p. 923, doi. 10.1002/prot.21000

By:

Rajavel, M.;
Warrier, Thulasi;
Gopal, B.

Publication type:

Article

Molecular dynamics simulations of the hydrophobin SC3 at a hydrophobic/hydrophilic interface.

Published in:

Proteins, 2006, v. 64, n. 4, p. 863, doi. 10.1002/prot.20936

By:

Fan, Hao;
Wang, Xiaoqin;
Zhu, Jiang;
Robillard, George T.;
Mark, Alan E.

Publication type:

Article

Structural models of the snake venom factor V activators from Daboia russelli and Daboia lebetina.

Published in:

Proteins, 2006, v. 64, n. 4, p. 968, doi. 10.1002/prot.21051

By:

Segers, Kenneth;
Rosing, Jan;
Nicolaes, Gerry A.F.

Publication type:

Article

Characterization of the backbone geometry of protein native state structures.

Published in:

Proteins, 2006, v. 64, n. 4, p. 992, doi. 10.1002/prot.20998

By:

K.V., Brinda;
Vishveshwara, Saraswathi

Publication type:

Article

Structural and functional evolution of transthyretin and transthyretin-like proteins.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1024, doi. 10.1002/prot.21033

By:

Hennebry, Sarah C.;
Wright, Hannah M.;
Likic, Vladimir A.;
Richardson, Samantha J.

Publication type:

Article

A computational analysis of the binding affinities of FKBP12 inhibitors using the MM-PB/SA method.

Published in:

Proteins, 2006, v. 64, n. 4, p. 1058, doi. 10.1002/prot.21044

By:

Xu, Yong;
Wang, Renxiao

Publication type:

Article

A model of local-minima distribution on conformational space and its application to protein structure prediction.

Published in:

Proteins, 2006, v. 64, n. 4, p. 985, doi. 10.1002/prot.21084

By:

Li, Hongzhi

Publication type:

Article

Crystal structures of human sulfotransferases SULT1B1 and SULT1C1 complexed with the cofactor product adenosine-3′- 5′-diphosphate (PAP).

Published in:

Proteins, 2006, v. 64, n. 4, p. 1091, doi. 10.1002/prot.21048

By:

Dombrovski, Luidmila;
Dong, Aiping;
Bochkarev, Alexey;
Plotnikov, Alexander N.

Publication type:

Article

Assembly of transmembrane helices of simple polytopic membrane proteins from sequence conservation patterns.

Published in:

Proteins, 2006, v. 64, n. 4, p. 895, doi. 10.1002/prot.21025

By:

Park, Yungki;
Helms, Volkhard

Publication type:

Article

Potential for assessing quality of protein structure based on contact number prediction.

Published in:

Proteins, 2006, v. 64, n. 4, p. 940, doi. 10.1002/prot.21047

By:

Ishida, Takashi;
Nakamura, Shugo;
Shimizu, Kentaro

Publication type:

Article

Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model.

Published in:

Proteins, 2006, v. 64, n. 4, p. 883, doi. 10.1002/prot.21069

By:

Mitomo, Daisuke;
Nakamura, Hironori K.;
Ikeda, Kazuyoshi;
Yamagishi, Akihiko;
Higo, Junichi

Publication type:

Article