Works matching IS 08873585 AND DT 2006 AND VI 63 AND IP 4
Results: 45
A simple clustering algorithm can be accurate enough for use in calculations of p Ks in macromolecules.
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- Proteins, 2006, v. 63, n. 4, p. 928, doi. 10.1002/prot.20922
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Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids.
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- Proteins, 2006, v. 63, n. 4, p. 777, doi. 10.1002/prot.20962
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Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
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- Proteins, 2006, v. 63, n. 4, p. 832, doi. 10.1002/prot.20933
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Detailed microscopic study of the full zipA:FtsZ interface.
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- Proteins, 2006, v. 63, n. 4, p. 811, doi. 10.1002/prot.20944
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Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.
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- Proteins, 2006, v. 63, n. 4, p. 986, doi. 10.1002/prot.20881
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Substructural cooperativity and parallel versus sequential events during protein unfolding.
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- Proteins, 2006, v. 63, n. 4, p. 1052, doi. 10.1002/prot.20966
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Crystal structures of two putative phosphoheptose isomerases.
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- Proteins, 2006, v. 63, n. 4, p. 1092, doi. 10.1002/prot.20908
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Codep: Maximizing co-evolutionary interdependencies to discover interacting proteins.
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- Proteins, 2006, v. 63, n. 4, p. 822, doi. 10.1002/prot.20948
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Crystal structure of VC0702 at 2.0 Å: Conserved hypothetical protein from Vibrio cholerae.
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- Proteins, 2006, v. 63, n. 4, p. 733, doi. 10.1002/prot.20919
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Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form.
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- Proteins, 2006, v. 63, n. 4, p. 1137, doi. 10.1002/prot.20856
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Crystal structure of phosphoribosylformylglycinamidine synthase II (smPurL) from Thermotoga maritima at 2.15 Å resolution.
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- Proteins, 2006, v. 63, n. 4, p. 1106, doi. 10.1002/prot.20650
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Empirical potential function for simplified protein models: Combining contact and local sequence-structure descriptors.
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- Proteins, 2006, v. 63, n. 4, p. 949, doi. 10.1002/prot.20809
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Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions.
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- Proteins, 2006, v. 63, n. 4, p. 868, doi. 10.1002/prot.20932
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Functional grouping based on signatures in protein termini.
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- Proteins, 2006, v. 63, n. 4, p. 996, doi. 10.1002/prot.20903
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Reducing CDK4/6-p16<sup>INK4a</sup> interface. Computational alanine scanning of a peptide bound to CDK6 protein.
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- Proteins, 2006, v. 63, n. 4, p. 797, doi. 10.1002/prot.20943
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Chemical compound navigator: A web-based chem-BLAST, chemical taxonomy-based search engine for browsing compounds.
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- Proteins, 2006, v. 63, n. 4, p. 907, doi. 10.1002/prot.20914
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Crystal structure of human spermidine/spermine N<sup>1</sup>-acetyltransferase (hSSAT): The first structure of a new sequence family of transferase homologous superfamily.
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- Proteins, 2006, v. 63, n. 4, p. 1127, doi. 10.1002/prot.20965
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Novel, structure-based mechanism for uridylylation of the genome-linked peptide (VPg) of picornaviruses.
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- Proteins, 2006, v. 63, n. 4, p. 719, doi. 10.1002/prot.20891
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Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory.
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- Proteins, 2006, v. 63, n. 4, p. 1038, doi. 10.1002/prot.20907
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Conformational flexibility may explain multiple cellular roles of PEST motifs.
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- Proteins, 2006, v. 63, n. 4, p. 727, doi. 10.1002/prot.20918
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Crystal structure of human protein tyrosine phosphatase 14 (PTPN14) at 1.65-Å resolution.
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- Proteins, 2006, v. 63, n. 4, p. 1132, doi. 10.1002/prot.20958
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Structures of intact glycoproteins from vibrational circular dichroism.
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- Proteins, 2006, v. 63, n. 4, p. 768, doi. 10.1002/prot.20884
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Discrimination of outer membrane proteins using machine learning algorithms.
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- Proteins, 2006, v. 63, n. 4, p. 1031, doi. 10.1002/prot.20929
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A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors.
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- Proteins, 2006, v. 63, n. 4, p. 1018, doi. 10.1002/prot.20899
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Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis.
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- Proteins, 2006, v. 63, n. 4, p. 1059, doi. 10.1002/prot.20920
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Effective handling of induced-fit motion in flexible docking.
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- Proteins, 2006, v. 63, n. 4, p. 878, doi. 10.1002/prot.20931
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Fold recognition and accurate sequence-structure alignment of sequences directing β-sheet proteins.
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- Proteins, 2006, v. 63, n. 4, p. 976, doi. 10.1002/prot.20942
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Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3.
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- Proteins, 2006, v. 63, n. 4, p. 1084, doi. 10.1002/prot.20913
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Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis.
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- Proteins, 2006, v. 63, n. 4, p. 1087, doi. 10.1002/prot.20924
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Effect of pH on the structure and stability of Bacillus circulans ssp. alkalophilus phosphoserine aminotransferase: Thermodynamic and crystallographic studies.
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- Proteins, 2006, v. 63, n. 4, p. 742, doi. 10.1002/prot.20935
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Nearest-neighbor effects and structural preferences in dipeptides are a function of the electronic properties of amino acid side-chains.
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- Proteins, 2006, v. 63, n. 4, p. 939, doi. 10.1002/prot.20906
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Modeling and functional analysis of AEBP1, a transcriptional repressor.
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- Proteins, 2006, v. 63, n. 4, p. 1069, doi. 10.1002/prot.20946
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Interdomain mobility in di-ubiquitin revealed by NMR.
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- Proteins, 2006, v. 63, n. 4, p. 787, doi. 10.1002/prot.20917
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Crystal structure of TM1367 from Thermotoga maritima at 1.90 Å resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold.
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- Proteins, 2006, v. 63, n. 4, p. 1112, doi. 10.1002/prot.20894
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The crystal structure of human muscle glycogen phosphorylase a with bound glucose and AMP: An intermediate conformation with T-state and R-state features.
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- Proteins, 2006, v. 63, n. 4, p. 1123, doi. 10.1002/prot.20939
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Polyglutamine repeats and β-helix structure: Molecular dynamics study.
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- Proteins, 2006, v. 63, n. 4, p. 918, doi. 10.1002/prot.20941
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Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold.
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- Proteins, 2006, v. 63, n. 4, p. 1119, doi. 10.1002/prot.20912
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D-Trehalose/ D-maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis: The binding of trehalose and maltose results in different protein conformational states.
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- Proteins, 2006, v. 63, n. 4, p. 754, doi. 10.1002/prot.20952
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QBES: Predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization.
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- Proteins, 2006, v. 63, n. 4, p. 961, doi. 10.1002/prot.20934
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Terminal ion pairs stabilize the second β-hairpin of the B1 domain of protein G.
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- Proteins, 2006, v. 63, n. 4, p. 1005, doi. 10.1002/prot.20916
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Reconciling the 'old' and 'new' views of protein allostery: A molecular simulation study of chemotaxis Y protein (CheY).
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- Proteins, 2006, v. 63, n. 4, p. 846, doi. 10.1002/prot.20893
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ARTIST: An activated method in internal coordinate space for sampling protein energy landscapes.
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- Proteins, 2006, v. 63, n. 4, p. 967, doi. 10.1002/prot.20938
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On the nature of cavities on protein surfaces: Application to the identification of drug-binding sites.
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- Proteins, 2006, v. 63, n. 4, p. 892, doi. 10.1002/prot.20897
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1.6 Å Crystal structure of a PA2721 protein from pseudomonas aeruginosa-A potential drug-resistance protein.
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- Proteins, 2006, v. 63, n. 4, p. 1102, doi. 10.1002/prot.20659
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Crystal structure of hypothetical protein YfiH from Shigella flexneri at 2 Å resolution.
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- Proteins, 2006, v. 63, n. 4, p. 1097, doi. 10.1002/prot.20589
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